RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 FAM69CQ0P6D2 419 aa24.99■■□□□ 1.59
VIM-203ENST00000469543 MYO3AQ8NEV4 1616 aa24.99■■□□□ 1.59
VIM-203ENST00000469543 TCERG1O14776 1098 aaKnown RBP24.99■■□□□ 1.59
VIM-203ENST00000469543 IPO9Q96P70 1041 aaKnown RBP24.97■■□□□ 1.59
VIM-203ENST00000469543 EVC2Q86UK5 1308 aa24.96■■□□□ 1.59
VIM-203ENST00000469543 MINK1Q8N4C8 1332 aaPredicted RBP24.96■■□□□ 1.59
VIM-203ENST00000469543 SRPK2P78362 688 aaKnown RBP24.96■■□□□ 1.59
VIM-203ENST00000469543 NBR1Q14596 966 aa24.95■■□□□ 1.58
VIM-203ENST00000469543 TCP11L2Q8N4U5 519 aa24.95■■□□□ 1.58
VIM-203ENST00000469543 BACH2Q9BYV9 841 aa24.95■■□□□ 1.58
VIM-203ENST00000469543 POLR3AO14802 1390 aaPredicted RBP24.95■■□□□ 1.58
VIM-203ENST00000469543 NEXMIFQ5QGS0 1516 aa24.95■■□□□ 1.58
VIM-203ENST00000469543 CGNL1Q0VF96 1302 aa24.94■■□□□ 1.58
VIM-203ENST00000469543 MLECQ14165 292 aa24.94■■□□□ 1.58
VIM-203ENST00000469543 GLI2P10070 1586 aa24.94■■□□□ 1.58
VIM-203ENST00000469543 E9PSI1 815 aa24.93■■□□□ 1.58
VIM-203ENST00000469543 GGNBP2Q9H3C7 697 aa24.93■■□□□ 1.58
VIM-203ENST00000469543 PRAM1Q96QH2 718 aa24.92■■□□□ 1.58
VIM-203ENST00000469543 TULP4Q9NRJ4 1543 aa24.91■■□□□ 1.58
VIM-203ENST00000469543 NKTRP30414 1462 aaKnown RBP24.91■■□□□ 1.58
VIM-203ENST00000469543 KDM2BQ8NHM5 1336 aa24.91■■□□□ 1.58
VIM-203ENST00000469543 SLC52A1Q9NWF4 448 aa24.91■■□□□ 1.58
VIM-203ENST00000469543 RICTORQ6R327 1708 aa24.91■■□□□ 1.58
VIM-203ENST00000469543 ZC3H13Q5T200 1668 aaKnown RBP24.89■■□□□ 1.58
VIM-203ENST00000469543 PIK3C2BO00750 1634 aa24.89■■□□□ 1.58
VIM-203ENST00000469543 BCL2L13Q9BXK5 485 aa24.89■■□□□ 1.58
VIM-203ENST00000469543 STAG3Q9UJ98 1225 aa24.89■■□□□ 1.57
VIM-203ENST00000469543 MYO5BQ9ULV0 1848 aa24.88■■□□□ 1.57
VIM-203ENST00000469543 U2AF1L5P0DN76 240 aaPredicted RBP24.88■■□□□ 1.57
VIM-203ENST00000469543 U2AF1Q01081 240 aaKnown RBP eCLIP24.88■■□□□ 1.57
VIM-203ENST00000469543 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.88■■□□□ 1.57
VIM-203ENST00000469543 PANK1Q8TE04 598 aa24.88■■□□□ 1.57
VIM-203ENST00000469543 FRAT1Q92837 279 aaPredicted RBP24.88■■□□□ 1.57
VIM-203ENST00000469543 ZBTB47Q9UFB7 747 aaPredicted RBP24.88■■□□□ 1.57
VIM-203ENST00000469543 RUNDC1Q96C34 613 aa24.88■■□□□ 1.57
VIM-203ENST00000469543 POGKQ9P215 609 aa24.88■■□□□ 1.57
VIM-203ENST00000469543 FBLN1P23142 703 aa24.87■■□□□ 1.57
VIM-203ENST00000469543 RGS3P49796 1198 aa24.86■■□□□ 1.57
VIM-203ENST00000469543 TNNQ9UQP3 1299 aa24.86■■□□□ 1.57
VIM-203ENST00000469543 A0A1W2PP64 1363 aa24.86■■□□□ 1.57
VIM-203ENST00000469543 ANKRD36BQ8N2N9 1353 aa24.85■■□□□ 1.57
VIM-203ENST00000469543 ARHGAP31Q2M1Z3 1444 aa24.85■■□□□ 1.57
VIM-203ENST00000469543 ARHGEF28Q8N1W1 1705 aaKnown RBP24.84■■□□□ 1.57
VIM-203ENST00000469543 COG6Q9Y2V7 657 aa24.84■■□□□ 1.57
VIM-203ENST00000469543 MS4A1P11836 297 aa24.84■■□□□ 1.57
VIM-203ENST00000469543 SHPRHQ149N8 1683 aa24.83■■□□□ 1.57
VIM-203ENST00000469543 WAPLQ7Z5K2 1190 aa24.83■■□□□ 1.57
VIM-203ENST00000469543 IGHDP01880 384 aa24.82■■□□□ 1.56
VIM-203ENST00000469543 U2SURPO15042 1029 aaKnown RBP24.82■■□□□ 1.56
VIM-203ENST00000469543 CENPQQ7L2Z9 268 aaPredicted RBP24.81■■□□□ 1.56
VIM-203ENST00000469543 TSPOAP1O95153 1857 aa24.81■■□□□ 1.56
VIM-203ENST00000469543 FYB1O15117 783 aa24.8■■□□□ 1.56
VIM-203ENST00000469543 CANXP27824 592 aaKnown RBP24.8■■□□□ 1.56
VIM-203ENST00000469543 CFAP53Q96M91 514 aa24.8■■□□□ 1.56
VIM-203ENST00000469543 CABP1Q9NZU7 370 aa24.79■■□□□ 1.56
VIM-203ENST00000469543 CLUAP1Q96AJ1 413 aa24.78■■□□□ 1.56
VIM-203ENST00000469543 CDK19Q9BWU1 502 aa24.78■■□□□ 1.56
VIM-203ENST00000469543 TMEM131LA2VDJ0 1609 aa24.77■■□□□ 1.56
VIM-203ENST00000469543 RARSP54136 660 aaKnown RBP24.76■■□□□ 1.55
VIM-203ENST00000469543 PHF23Q9BUL5 403 aaPredicted RBP24.76■■□□□ 1.55
VIM-203ENST00000469543 YTHDC2Q9H6S0 1430 aaKnown RBP24.76■■□□□ 1.55
VIM-203ENST00000469543 RLBP1P12271 317 aa24.76■■□□□ 1.55
VIM-203ENST00000469543 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.76■■□□□ 1.55
VIM-203ENST00000469543 TSR2Q969E8 191 aaKnown RBP24.76■■□□□ 1.55
VIM-203ENST00000469543 PREX1Q8TCU6 1659 aa24.75■■□□□ 1.55
VIM-203ENST00000469543 PTPRMP28827 1452 aa24.75■■□□□ 1.55
VIM-203ENST00000469543 PPM1GO15355 546 aaPredicted RBP24.73■■□□□ 1.55
VIM-203ENST00000469543 PUS7Q96PZ0 661 aaKnown RBP24.73■■□□□ 1.55
VIM-203ENST00000469543 ZFYVE9O95405 1425 aa24.73■■□□□ 1.55
VIM-203ENST00000469543 SLC4A3P48751 1232 aa24.72■■□□□ 1.55
VIM-203ENST00000469543 NGEFQ8N5V2 710 aa24.72■■□□□ 1.55
VIM-203ENST00000469543 LAS1LQ9Y4W2 734 aaKnown RBP24.71■■□□□ 1.55
VIM-203ENST00000469543 ABCC11Q96J66 1382 aa24.71■■□□□ 1.55
VIM-203ENST00000469543 IQSEC2Q5JU85 1478 aa24.7■■□□□ 1.55
VIM-203ENST00000469543 TERF2IPQ9NYB0 399 aa24.7■■□□□ 1.54
VIM-203ENST00000469543 C8orf34Q49A92 452 aa24.69■■□□□ 1.54
VIM-203ENST00000469543 CD163L1Q9NR16 1453 aa24.69■■□□□ 1.54
VIM-203ENST00000469543 WDR63Q8IWG1 891 aa24.69■■□□□ 1.54
VIM-203ENST00000469543 NCKAP5LQ9HCH0 1330 aa24.69■■□□□ 1.54
VIM-203ENST00000469543 PDE3AQ14432 1141 aa24.68■■□□□ 1.54
VIM-203ENST00000469543 PLEKHF1Q96S99 279 aa24.68■■□□□ 1.54
VIM-203ENST00000469543 ALKQ9UM73 1620 aa24.66■■□□□ 1.54
VIM-203ENST00000469543 USP32Q8NFA0 1604 aa24.65■■□□□ 1.54
VIM-203ENST00000469543 TRIM35Q9UPQ4 493 aa24.65■■□□□ 1.54
VIM-203ENST00000469543 PCDHB15Q9Y5E8 787 aa24.65■■□□□ 1.54
VIM-203ENST00000469543 NSD2O96028 1365 aa24.64■■□□□ 1.54
VIM-203ENST00000469543 TMPOP42166 694 aaKnown RBP24.64■■□□□ 1.54
VIM-203ENST00000469543 RIMBP3CA6NJZ7 1639 aa24.64■■□□□ 1.54
VIM-203ENST00000469543 RIMBP3BA6NNM3 1639 aa24.64■■□□□ 1.54
VIM-203ENST00000469543 RIMBP3Q9UFD9 1639 aa24.64■■□□□ 1.54
VIM-203ENST00000469543 CCDC27Q2M243 656 aa24.63■■□□□ 1.53
VIM-203ENST00000469543 TXNDC2Q86VQ3 553 aa24.63■■□□□ 1.53
VIM-203ENST00000469543 ATAD2Q6PL18 1390 aa24.63■■□□□ 1.53
VIM-203ENST00000469543 FAM161AQ3B820 660 aa24.63■■□□□ 1.53
VIM-203ENST00000469543 HDGFL2Q7Z4V5 671 aaPredicted RBP24.63■■□□□ 1.53
VIM-203ENST00000469543 ZRANB1Q9UGI0 708 aa24.63■■□□□ 1.53
VIM-203ENST00000469543 EXOSC9Q06265 439 aaKnown RBP24.62■■□□□ 1.53
VIM-203ENST00000469543 DIP2BQ9P265 1576 aa24.62■■□□□ 1.53
VIM-203ENST00000469543 NLRP1Q9C000 1473 aa24.6■■□□□ 1.53
VIM-203ENST00000469543 RIPK4P57078 832 aa24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms