RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 MAGI1Q96QZ7 1491 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-219ENST00000469439 RAPGEF2Q9Y4G8 1499 aa9.23□□□□□ -0.93
SYNE1-219ENST00000469439 RSPH4AQ5TD94 716 aa9.23□□□□□ -0.93
SYNE1-219ENST00000469439 CHMP7Q8WUX9 453 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-219ENST00000469439 TULP1O00294 542 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-219ENST00000469439 CUL7Q14999 1698 aa9.22□□□□□ -0.93
SYNE1-219ENST00000469439 PRXQ9BXM0 1461 aa9.21□□□□□ -0.93
SYNE1-219ENST00000469439 RNF223E7ERA6 249 aa9.21□□□□□ -0.94
SYNE1-219ENST00000469439 NR1I2O75469 434 aa9.21□□□□□ -0.94
SYNE1-219ENST00000469439 MAP2K5Q13163 448 aa9.21□□□□□ -0.94
SYNE1-219ENST00000469439 DDX11L8A8MPP1 907 aa9.2□□□□□ -0.94
SYNE1-219ENST00000469439 ADH1BP00325 375 aa9.2□□□□□ -0.94
SYNE1-219ENST00000469439 LAPTM4AQ15012 233 aa9.2□□□□□ -0.94
SYNE1-219ENST00000469439 RDH13Q8NBN7 331 aa9.2□□□□□ -0.94
SYNE1-219ENST00000469439 TNIKQ9UKE5 1360 aa9.2□□□□□ -0.94
SYNE1-219ENST00000469439 AQRO60306 1485 aaKnown RBP eCLIP9.2□□□□□ -0.94
SYNE1-219ENST00000469439 PUS10Q3MIT2 529 aaKnown RBP9.19□□□□□ -0.94
SYNE1-219ENST00000469439 Q6ZNB5 142 aa9.19□□□□□ -0.94
SYNE1-219ENST00000469439 SULF1Q8IWU6 871 aa9.19□□□□□ -0.94
SYNE1-219ENST00000469439 KIF21BO75037 1637 aa9.19□□□□□ -0.94
SYNE1-219ENST00000469439 ABCA5Q8WWZ7 1642 aa9.19□□□□□ -0.94
SYNE1-219ENST00000469439 S1PR4O95977 384 aa9.18□□□□□ -0.94
SYNE1-219ENST00000469439 SYNJ2O15056 1496 aa9.17□□□□□ -0.94
SYNE1-219ENST00000469439 GFRA3O60609 400 aa9.17□□□□□ -0.94
SYNE1-219ENST00000469439 SLC24A1O60721 1099 aa9.17□□□□□ -0.94
SYNE1-219ENST00000469439 FUT2Q10981 343 aa9.17□□□□□ -0.94
SYNE1-219ENST00000469439 SCUBE3Q8IX30 993 aa9.17□□□□□ -0.94
SYNE1-219ENST00000469439 ANKLE1Q8NAG6 615 aa9.17□□□□□ -0.94
SYNE1-219ENST00000469439 EMID1Q96A84 441 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-219ENST00000469439 RUSC2Q8N2Y8 1516 aa9.16□□□□□ -0.94
SYNE1-219ENST00000469439 GCGRP47871 477 aa9.16□□□□□ -0.94
SYNE1-219ENST00000469439 MORN1Q5T089 497 aa9.16□□□□□ -0.94
SYNE1-219ENST00000469439 ZNF608Q9ULD9 1512 aaPredicted RBP9.15□□□□□ -0.94
SYNE1-219ENST00000469439 SLC6A16Q9GZN6 736 aa9.15□□□□□ -0.94
SYNE1-219ENST00000469439 EIF4G3O43432 1585 aaKnown RBP9.15□□□□□ -0.95
SYNE1-219ENST00000469439 MINK1Q8N4C8 1332 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-219ENST00000469439 NRG2O14511 850 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-219ENST00000469439 PPEF1O14829 653 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-219ENST00000469439 IRF6O14896 467 aa9.14□□□□□ -0.95
SYNE1-219ENST00000469439 ATP6V1AP38606 617 aa9.14□□□□□ -0.95
SYNE1-219ENST00000469439 SNAPC4Q5SXM2 1469 aa9.14□□□□□ -0.95
SYNE1-219ENST00000469439 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.13□□□□□ -0.95
SYNE1-219ENST00000469439 CCDC102AQ96A19 550 aa9.13□□□□□ -0.95
SYNE1-219ENST00000469439 SPSB2Q99619 263 aa9.13□□□□□ -0.95
SYNE1-219ENST00000469439 LOC105371045A0A1W2PR82 267 aa9.12□□□□□ -0.95
SYNE1-219ENST00000469439 LCE2BO14633 110 aa9.12□□□□□ -0.95
SYNE1-219ENST00000469439 CD46P15529 392 aa9.12□□□□□ -0.95
SYNE1-219ENST00000469439 SLC19A1P41440 591 aa9.12□□□□□ -0.95
SYNE1-219ENST00000469439 THAP11Q96EK4 314 aa9.12□□□□□ -0.95
SYNE1-219ENST00000469439 SLC27A5Q9Y2P5 690 aa9.11□□□□□ -0.95
SYNE1-219ENST00000469439 PBRM1Q86U86 1689 aa9.1□□□□□ -0.95
SYNE1-219ENST00000469439 GRIN2AQ12879 1464 aa9.1□□□□□ -0.95
SYNE1-219ENST00000469439 SPRYD7Q5W111 196 aa9.1□□□□□ -0.95
SYNE1-219ENST00000469439 LIAT1Q6ZQX7 453 aa9.1□□□□□ -0.95
SYNE1-219ENST00000469439 KIAA0586Q9BVV6 1533 aa9.1□□□□□ -0.95
SYNE1-219ENST00000469439 ADAMTS12P58397 1594 aa9.09□□□□□ -0.95
SYNE1-219ENST00000469439 CARMIL2Q6F5E8 1435 aa9.09□□□□□ -0.95
SYNE1-219ENST00000469439 MDM2Q00987 491 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-219ENST00000469439 PLA2G2CQ5R387 149 aa9.09□□□□□ -0.95
SYNE1-219ENST00000469439 LMOD2Q6P5Q4 547 aa9.09□□□□□ -0.95
SYNE1-219ENST00000469439 TRIM67Q6ZTA4 783 aa9.09□□□□□ -0.95
SYNE1-219ENST00000469439 PDZRN3Q9UPQ7 1066 aa9.09□□□□□ -0.95
SYNE1-219ENST00000469439 SALL2Q9Y467 1007 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-219ENST00000469439 FMNL1O95466 1100 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-219ENST00000469439 ZNF598Q86UK7 904 aaKnown RBP9.08□□□□□ -0.96
SYNE1-219ENST00000469439 CLIP1P30622 1438 aa9.06□□□□□ -0.96
SYNE1-219ENST00000469439 GRIPAP1Q4V328 841 aa9.06□□□□□ -0.96
SYNE1-219ENST00000469439 BRICD5Q6PL45 260 aa9.06□□□□□ -0.96
SYNE1-219ENST00000469439 FAM160A2Q8N612 972 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-219ENST00000469439 NUP160Q12769 1436 aa9.05□□□□□ -0.96
SYNE1-219ENST00000469439 CEP162Q5TB80 1403 aa9.05□□□□□ -0.96
SYNE1-219ENST00000469439 MSS51Q4VC12 460 aa9.05□□□□□ -0.96
SYNE1-219ENST00000469439 ZNF697Q5TEC3 545 aa9.05□□□□□ -0.96
SYNE1-219ENST00000469439 TRAF7Q6Q0C0 670 aa9.05□□□□□ -0.96
SYNE1-219ENST00000469439 RNF19BQ6ZMZ0 732 aa9.05□□□□□ -0.96
SYNE1-219ENST00000469439 GPCPD1Q9NPB8 672 aa9.05□□□□□ -0.96
SYNE1-219ENST00000469439 PRDM9Q9NQV7 894 aa9.05□□□□□ -0.96
SYNE1-219ENST00000469439 EFCAB5A4FU69 1503 aa9.05□□□□□ -0.96
SYNE1-219ENST00000469439 KDM4AO75164 1064 aa9.04□□□□□ -0.96
SYNE1-219ENST00000469439 CLCN1P35523 988 aa9.04□□□□□ -0.96
SYNE1-219ENST00000469439 PRR20EP86478 221 aa9.04□□□□□ -0.96
SYNE1-219ENST00000469439 PRR20CP86479 221 aa9.04□□□□□ -0.96
SYNE1-219ENST00000469439 PRR20DP86480 221 aa9.04□□□□□ -0.96
SYNE1-219ENST00000469439 PRR20BP86481 221 aa9.04□□□□□ -0.96
SYNE1-219ENST00000469439 PRR20AP86496 221 aa9.04□□□□□ -0.96
SYNE1-219ENST00000469439 FAM217BQ9NTX9 383 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-219ENST00000469439 FCF1Q9Y324 198 aaKnown RBP9.03□□□□□ -0.96
SYNE1-219ENST00000469439 FMN1Q68DA7 1419 aa9.03□□□□□ -0.96
SYNE1-219ENST00000469439 USP46P62068 366 aa9.02□□□□□ -0.97
SYNE1-219ENST00000469439 IQGAP2Q13576 1575 aa9.02□□□□□ -0.97
SYNE1-219ENST00000469439 HOXA2O43364 376 aa9.01□□□□□ -0.97
SYNE1-219ENST00000469439 GDF9O60383 454 aa9.01□□□□□ -0.97
SYNE1-219ENST00000469439 ZMYND10O75800 440 aa9.01□□□□□ -0.97
SYNE1-219ENST00000469439 Q3C1V9 767 aa9.01□□□□□ -0.97
SYNE1-219ENST00000469439 BARGINQ6ZT62 677 aa9.01□□□□□ -0.97
SYNE1-219ENST00000469439 RPIAP49247 311 aa9□□□□□ -0.97
SYNE1-219ENST00000469439 HLA-CQ95604 372 aa9□□□□□ -0.97
SYNE1-219ENST00000469439 REPIN1Q9BWE0 567 aaKnown RBP9□□□□□ -0.97
SYNE1-219ENST00000469439 UGGT2Q9NYU1 1516 aa9□□□□□ -0.97
SYNE1-219ENST00000469439 RANGAP1P46060 587 aaPredicted RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms