RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 FAM160A2Q8N612 972 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-218ENST00000468937 ANKLE1Q8NAG6 615 aa12.16□□□□□ -0.46
SYNE1-218ENST00000468937 C6orf229H3BNL8 230 aa12.14□□□□□ -0.47
SYNE1-218ENST00000468937 SPTLC1O15269 473 aa12.14□□□□□ -0.47
SYNE1-218ENST00000468937 RSBN1LQ6PCB5 846 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-218ENST00000468937 RIC3Q7Z5B4 369 aa12.14□□□□□ -0.47
SYNE1-218ENST00000468937 RETREG3Q86VR2 466 aa12.13□□□□□ -0.47
SYNE1-218ENST00000468937 PCDHGC3Q9UN70 934 aa12.13□□□□□ -0.47
SYNE1-218ENST00000468937 SPDYE5A6NIY4 337 aa12.12□□□□□ -0.47
SYNE1-218ENST00000468937 MYSM1Q5VVJ2 828 aa12.12□□□□□ -0.47
SYNE1-218ENST00000468937 FAM117AQ9C073 453 aa12.11□□□□□ -0.47
SYNE1-218ENST00000468937 V9GY48 417 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-218ENST00000468937 PPEF1O14829 653 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-218ENST00000468937 MTMR2Q13614 643 aa12.1□□□□□ -0.47
SYNE1-218ENST00000468937 SYMPKQ92797 1274 aaKnown RBP12.1□□□□□ -0.47
SYNE1-218ENST00000468937 PRKD2Q9BZL6 878 aa12.1□□□□□ -0.47
SYNE1-218ENST00000468937 PRKCSHP14314 528 aaPredicted RBP12.09□□□□□ -0.47
SYNE1-218ENST00000468937 MMP16P51512 607 aa12.09□□□□□ -0.47
SYNE1-218ENST00000468937 TUSC1Q2TAM9 212 aa12.09□□□□□ -0.47
SYNE1-218ENST00000468937 BRPF1P55201 1214 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-218ENST00000468937 PRPF38BQ5VTL8 546 aaKnown RBP12.08□□□□□ -0.48
SYNE1-218ENST00000468937 ZBTB3Q9H5J0 574 aa12.08□□□□□ -0.48
SYNE1-218ENST00000468937 PRDM9Q9NQV7 894 aa12.08□□□□□ -0.48
SYNE1-218ENST00000468937 CLK2P49760 499 aaKnown RBP12.07□□□□□ -0.48
SYNE1-218ENST00000468937 DXOO77932 396 aaKnown RBP12.06□□□□□ -0.48
SYNE1-218ENST00000468937 FCF1Q9Y324 198 aaKnown RBP12.06□□□□□ -0.48
SYNE1-218ENST00000468937 PCDHB15Q9Y5E8 787 aa12.06□□□□□ -0.48
SYNE1-218ENST00000468937 JUNDP17535 347 aa12.05□□□□□ -0.48
SYNE1-218ENST00000468937 SLC19A1P41440 591 aa12.05□□□□□ -0.48
SYNE1-218ENST00000468937 SKIV2LQ15477 1246 aaKnown RBP12.05□□□□□ -0.48
SYNE1-218ENST00000468937 SH3D19Q5HYK7 790 aa12.05□□□□□ -0.48
SYNE1-218ENST00000468937 CSPP1Q1MSJ5 1256 aa12.04□□□□□ -0.48
SYNE1-218ENST00000468937 POLR3EQ9NVU0 708 aa12.04□□□□□ -0.48
SYNE1-218ENST00000468937 LIMD1Q9UGP4 676 aa12.04□□□□□ -0.48
SYNE1-218ENST00000468937 PLEKHG3A1L390 1219 aa12.03□□□□□ -0.48
SYNE1-218ENST00000468937 HRCP23327 699 aa12.03□□□□□ -0.48
SYNE1-218ENST00000468937 PRR7Q8TB68 274 aa12.03□□□□□ -0.48
SYNE1-218ENST00000468937 NUTM2BA6NNL0 878 aaPredicted RBP12.02□□□□□ -0.49
SYNE1-218ENST00000468937 NUTM2EB1AL46 878 aaPredicted RBP12.02□□□□□ -0.49
SYNE1-218ENST00000468937 NUTM2DQ5VT03 806 aaPredicted RBP12.02□□□□□ -0.49
SYNE1-218ENST00000468937 DESI1Q6ICB0 168 aa12.02□□□□□ -0.49
SYNE1-218ENST00000468937 NUTM2AQ8IVF1 878 aaPredicted RBP12.02□□□□□ -0.49
SYNE1-218ENST00000468937 ATP1B4Q9UN42 357 aaPredicted RBP12.02□□□□□ -0.49
SYNE1-218ENST00000468937 ZBTB24O43167 697 aaPredicted RBP12.01□□□□□ -0.49
SYNE1-218ENST00000468937 RPIAP49247 311 aa12□□□□□ -0.49
SYNE1-218ENST00000468937 IL27Q8NEV9 243 aa12□□□□□ -0.49
SYNE1-218ENST00000468937 LILRB3O75022 631 aa11.99□□□□□ -0.49
SYNE1-218ENST00000468937 LIAT1Q6ZQX7 453 aa11.99□□□□□ -0.49
SYNE1-218ENST00000468937 GOPCQ9HD26 462 aa11.99□□□□□ -0.49
SYNE1-218ENST00000468937 CD2BP2O95400 341 aaKnown RBP11.98□□□□□ -0.49
SYNE1-218ENST00000468937 PLA2G2CQ5R387 149 aa11.98□□□□□ -0.49
SYNE1-218ENST00000468937 SPRYD7Q5W111 196 aa11.98□□□□□ -0.49
SYNE1-218ENST00000468937 CCDC24Q8N4L8 307 aa11.98□□□□□ -0.49
SYNE1-218ENST00000468937 CABLES1Q8TDN4 633 aa11.98□□□□□ -0.49
SYNE1-218ENST00000468937 NUDT12Q9BQG2 462 aa11.97□□□□□ -0.49
SYNE1-218ENST00000468937 QPCTQ16769 361 aa11.96□□□□□ -0.49
SYNE1-218ENST00000468937 PTPRNQ16849 979 aa11.96□□□□□ -0.49
SYNE1-218ENST00000468937 ZNF598Q86UK7 904 aaKnown RBP11.96□□□□□ -0.49
SYNE1-218ENST00000468937 EMID1Q96A84 441 aaPredicted RBP11.96□□□□□ -0.49
SYNE1-218ENST00000468937 IRX2Q9BZI1 471 aaPredicted RBP11.96□□□□□ -0.49
SYNE1-218ENST00000468937 CCNYL3P0C7X3 344 aa11.95□□□□□ -0.5
SYNE1-218ENST00000468937 PCMTD1Q96MG8 357 aaPredicted RBP11.95□□□□□ -0.5
SYNE1-218ENST00000468937 CFAP99D6REC4 459 aa11.94□□□□□ -0.5
SYNE1-218ENST00000468937 HELBQ8NG08 1087 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-218ENST00000468937 ZNF697Q5TEC3 545 aa11.93□□□□□ -0.5
SYNE1-218ENST00000468937 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.93□□□□□ -0.5
SYNE1-218ENST00000468937 LYPD8Q6UX82 237 aa11.92□□□□□ -0.5
SYNE1-218ENST00000468937 PROCA1Q8NCQ7 364 aaPredicted RBP11.92□□□□□ -0.5
SYNE1-218ENST00000468937 TSC1Q92574 1164 aa11.92□□□□□ -0.5
SYNE1-218ENST00000468937 LAPTM4AQ15012 233 aa11.91□□□□□ -0.5
SYNE1-218ENST00000468937 RTL5Q5HYW3 569 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-218ENST00000468937 EVA1BQ9NVM1 165 aa11.91□□□□□ -0.5
SYNE1-218ENST00000468937 TRIM32Q13049 653 aa11.89□□□□□ -0.51
SYNE1-218ENST00000468937 PPP2R2DQ66LE6 453 aa11.89□□□□□ -0.51
SYNE1-218ENST00000468937 KCNH2Q12809 1159 aa11.88□□□□□ -0.51
SYNE1-218ENST00000468937 GFRA3O60609 400 aa11.87□□□□□ -0.51
SYNE1-218ENST00000468937 PDZRN3Q9UPQ7 1066 aa11.87□□□□□ -0.51
SYNE1-218ENST00000468937 CTHP32929 405 aa11.86□□□□□ -0.51
SYNE1-218ENST00000468937 PRR20EP86478 221 aa11.84□□□□□ -0.51
SYNE1-218ENST00000468937 PRR20CP86479 221 aa11.84□□□□□ -0.51
SYNE1-218ENST00000468937 PRR20DP86480 221 aa11.84□□□□□ -0.51
SYNE1-218ENST00000468937 PRR20BP86481 221 aa11.84□□□□□ -0.51
SYNE1-218ENST00000468937 PRR20AP86496 221 aa11.84□□□□□ -0.51
SYNE1-218ENST00000468937 PTCRAQ6ISU1 281 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-218ENST00000468937 NRG2O14511 850 aaPredicted RBP11.83□□□□□ -0.52
SYNE1-218ENST00000468937 WNT7BP56706 349 aa11.83□□□□□ -0.52
SYNE1-218ENST00000468937 UNC93B1Q9H1C4 597 aa11.83□□□□□ -0.52
SYNE1-218ENST00000468937 PER1O15534 1290 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-218ENST00000468937 GDF9O60383 454 aa11.81□□□□□ -0.52
SYNE1-218ENST00000468937 F12P00748 615 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-218ENST00000468937 CTDSPL2Q05D32 466 aa11.81□□□□□ -0.52
SYNE1-218ENST00000468937 FOXC1Q12948 553 aa11.81□□□□□ -0.52
SYNE1-218ENST00000468937 WNT7AO00755 349 aa11.8□□□□□ -0.52
SYNE1-218ENST00000468937 RFC5P40937 340 aa11.8□□□□□ -0.52
SYNE1-218ENST00000468937 TRIM67Q6ZTA4 783 aa11.8□□□□□ -0.52
SYNE1-218ENST00000468937 AP1G2O75843 785 aa11.79□□□□□ -0.52
SYNE1-218ENST00000468937 TMEM259Q4ZIN3 620 aa11.79□□□□□ -0.52
SYNE1-218ENST00000468937 ARMC2Q8NEN0 867 aa11.79□□□□□ -0.52
SYNE1-218ENST00000468937 PKD2L1Q9P0L9 805 aa11.79□□□□□ -0.52
SYNE1-218ENST00000468937 TNFRSF10AO00220 468 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms