RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 ROBO1Q9Y6N7 1651 aa29.19■■■□□ 2.26
SKA3-205ENST00000465471 CCER1Q8TC90 406 aaPredicted RBP29.19■■■□□ 2.26
SKA3-205ENST00000465471 ATF3P18847 181 aa29.18■■■□□ 2.26
SKA3-205ENST00000465471 SLAIN2Q9P270 581 aa29.17■■■□□ 2.26
SKA3-205ENST00000465471 TRAK1Q9UPV9 953 aa29.17■■■□□ 2.26
SKA3-205ENST00000465471 PRAM1Q96QH2 718 aa29.16■■■□□ 2.26
SKA3-205ENST00000465471 TIMELESSQ9UNS1 1208 aa29.16■■■□□ 2.26
SKA3-205ENST00000465471 ADGRB2O60241 1585 aa29.16■■■□□ 2.26
SKA3-205ENST00000465471 GPRASP1Q5JY77 1395 aa29.15■■■□□ 2.26
SKA3-205ENST00000465471 RALGAPBQ86X10 1494 aa29.15■■■□□ 2.26
SKA3-205ENST00000465471 SCAF1Q9H7N4 1312 aaKnown RBP29.14■■■□□ 2.25
SKA3-205ENST00000465471 FMN2Q9NZ56 1722 aa29.11■■■□□ 2.25
SKA3-205ENST00000465471 ROCK2O75116 1388 aaKnown RBP29.11■■■□□ 2.25
SKA3-205ENST00000465471 C1orf167Q5SNV9 1468 aa29.1■■■□□ 2.25
SKA3-205ENST00000465471 POGKQ9P215 609 aa29.08■■■□□ 2.25
SKA3-205ENST00000465471 SAFB2Q14151 953 aaKnown RBP eCLIP29.05■■■□□ 2.24
SKA3-205ENST00000465471 HSPA1LP34931 641 aa29.04■■■□□ 2.24
SKA3-205ENST00000465471 AHDC1Q5TGY3 1603 aaPredicted RBP29.04■■■□□ 2.24
SKA3-205ENST00000465471 BRINP3Q76B58 766 aa29.03■■■□□ 2.24
SKA3-205ENST00000465471 NHSL1Q5SYE7 1610 aa29.02■■■□□ 2.24
SKA3-205ENST00000465471 QRICH2Q9H0J4 1663 aa29.02■■■□□ 2.24
SKA3-205ENST00000465471 USP32Q8NFA0 1604 aa28.99■■■□□ 2.23
SKA3-205ENST00000465471 PHLPP1O60346 1717 aa28.99■■■□□ 2.23
SKA3-205ENST00000465471 MINK1Q8N4C8 1332 aaPredicted RBP28.98■■■□□ 2.23
SKA3-205ENST00000465471 CENPJQ9HC77 1338 aaPredicted RBP28.98■■■□□ 2.23
SKA3-205ENST00000465471 COL16A1Q07092 1604 aaPredicted RBP28.98■■■□□ 2.23
SKA3-205ENST00000465471 RGPD8O14715 1765 aaPredicted RBP28.96■■■□□ 2.23
SKA3-205ENST00000465471 ANKARQ7Z5J8 1434 aa28.95■■■□□ 2.23
SKA3-205ENST00000465471 TULP4Q9NRJ4 1543 aa28.95■■■□□ 2.23
SKA3-205ENST00000465471 HIRIP3Q9BW71 556 aaPredicted RBP28.95■■■□□ 2.22
SKA3-205ENST00000465471 CARD11Q9BXL7 1154 aa28.95■■■□□ 2.22
SKA3-205ENST00000465471 EIF3AQ14152 1382 aaKnown RBP28.95■■■□□ 2.22
SKA3-205ENST00000465471 ORAI2Q96SN7 254 aa28.94■■■□□ 2.22
SKA3-205ENST00000465471 WASLO00401 505 aaPredicted RBP28.93■■■□□ 2.22
SKA3-205ENST00000465471 KIF1AQ12756 1690 aa28.93■■■□□ 2.22
SKA3-205ENST00000465471 NUTM2FA1L443 756 aa28.89■■■□□ 2.22
SKA3-205ENST00000465471 ATP7BP35670 1465 aa28.89■■■□□ 2.22
SKA3-205ENST00000465471 SBNO2Q9Y2G9 1366 aa28.88■■■□□ 2.21
SKA3-205ENST00000465471 PRR36Q9H6K5 1346 aa28.88■■■□□ 2.21
SKA3-205ENST00000465471 ESCO1Q5FWF5 840 aa28.87■■■□□ 2.21
SKA3-205ENST00000465471 TOPAZ1Q8N9V7 1692 aa28.86■■■□□ 2.21
SKA3-205ENST00000465471 ITSN1Q15811 1721 aa28.86■■■□□ 2.21
SKA3-205ENST00000465471 CDK19Q9BWU1 502 aa28.83■■■□□ 2.21
SKA3-205ENST00000465471 PXDNQ92626 1479 aa28.83■■■□□ 2.21
SKA3-205ENST00000465471 DDX17Q92841 729 aaKnown RBP28.82■■■□□ 2.2
SKA3-205ENST00000465471 SOS2Q07890 1332 aaPredicted RBP28.82■■■□□ 2.2
SKA3-205ENST00000465471 SHPRHQ149N8 1683 aa28.81■■■□□ 2.2
SKA3-205ENST00000465471 NPHP3Q7Z494 1330 aa28.8■■■□□ 2.2
SKA3-205ENST00000465471 PHF8Q9UPP1 1060 aa28.8■■■□□ 2.2
SKA3-205ENST00000465471 USP47Q96K76 1375 aa28.78■■■□□ 2.2
SKA3-205ENST00000465471 JCADQ9P266 1359 aa28.78■■■□□ 2.2
SKA3-205ENST00000465471 NUDT16Q96DE0 195 aaKnown RBP28.78■■■□□ 2.2
SKA3-205ENST00000465471 EVC2Q86UK5 1308 aa28.76■■■□□ 2.19
SKA3-205ENST00000465471 FOXO3O43524 673 aa28.76■■■□□ 2.19
SKA3-205ENST00000465471 ST20-MTHFSA0A0A6YYL1 179 aa28.73■■■□□ 2.19
SKA3-205ENST00000465471 TESK2Q96S53 571 aa28.73■■■□□ 2.19
SKA3-205ENST00000465471 SRPK2P78362 688 aaKnown RBP28.72■■■□□ 2.19
SKA3-205ENST00000465471 LRRC59Q96AG4 307 aaKnown RBP28.72■■■□□ 2.19
SKA3-205ENST00000465471 CABP2Q9NPB3 220 aa28.72■■■□□ 2.19
SKA3-205ENST00000465471 CCDC61Q9Y6R9 512 aa28.72■■■□□ 2.19
SKA3-205ENST00000465471 TRPM3Q9HCF6 1732 aaPredicted RBP28.71■■■□□ 2.19
SKA3-205ENST00000465471 MED1Q15648 1581 aaPredicted RBP28.71■■■□□ 2.19
SKA3-205ENST00000465471 PMFBP1Q8TBY8 1022 aa28.7■■■□□ 2.18
SKA3-205ENST00000465471 COL22A1Q8NFW1 1626 aaPredicted RBP28.69■■■□□ 2.18
SKA3-205ENST00000465471 POLR3AO14802 1390 aaPredicted RBP28.69■■■□□ 2.18
SKA3-205ENST00000465471 PNPLA6Q8IY17 1366 aa28.69■■■□□ 2.18
SKA3-205ENST00000465471 PLEKHG3A1L390 1219 aa28.68■■■□□ 2.18
SKA3-205ENST00000465471 PPIP5K1Q6PFW1 1433 aa28.68■■■□□ 2.18
SKA3-205ENST00000465471 XPCQ01831 940 aaPredicted RBP28.67■■■□□ 2.18
SKA3-205ENST00000465471 KRT28Q7Z3Y7 464 aa28.66■■■□□ 2.18
SKA3-205ENST00000465471 SPATA31A6Q5VVP1 1343 aa28.66■■■□□ 2.18
SKA3-205ENST00000465471 SBNO1A3KN83 1393 aa28.65■■■□□ 2.18
SKA3-205ENST00000465471 ATAD2Q6PL18 1390 aa28.64■■■□□ 2.18
SKA3-205ENST00000465471 TNS3Q68CZ2 1445 aa28.63■■■□□ 2.17
SKA3-205ENST00000465471 SLC24A1O60721 1099 aa28.63■■■□□ 2.17
SKA3-205ENST00000465471 ALS2Q96Q42 1657 aa28.63■■■□□ 2.17
SKA3-205ENST00000465471 SPATA31A3Q5VYP0 1347 aa28.63■■■□□ 2.17
SKA3-205ENST00000465471 LRP6O75581 1613 aa28.62■■■□□ 2.17
SKA3-205ENST00000465471 PUS7Q96PZ0 661 aaKnown RBP28.62■■■□□ 2.17
SKA3-205ENST00000465471 PSME1Q06323 249 aa28.61■■■□□ 2.17
SKA3-205ENST00000465471 NGDNQ8NEJ9 315 aaKnown RBP28.61■■■□□ 2.17
SKA3-205ENST00000465471 ACEP12821 1306 aa28.61■■■□□ 2.17
SKA3-205ENST00000465471 DISP3Q9P2K9 1392 aa28.59■■■□□ 2.17
SKA3-205ENST00000465471 AKAP12Q02952 1782 aa28.58■■■□□ 2.17
SKA3-205ENST00000465471 CABP1Q9NZU7 370 aa28.58■■■□□ 2.17
SKA3-205ENST00000465471 EIF4G2P78344 907 aaKnown RBP eCLIP28.55■■■□□ 2.16
SKA3-205ENST00000465471 ARHGEF10O15013 1369 aa28.54■■■□□ 2.16
SKA3-205ENST00000465471 CPSF1Q10570 1443 aaKnown RBP28.53■■■□□ 2.16
SKA3-205ENST00000465471 ABCA3Q99758 1704 aa28.53■■■□□ 2.16
SKA3-205ENST00000465471 TMF1P82094 1093 aa28.53■■■□□ 2.16
SKA3-205ENST00000465471 CD163L1Q9NR16 1453 aa28.53■■■□□ 2.16
SKA3-205ENST00000465471 USP6P35125 1406 aa28.52■■■□□ 2.16
SKA3-205ENST00000465471 BRD4O60885 1362 aaPredicted RBP28.52■■■□□ 2.16
SKA3-205ENST00000465471 HSPA5P11021 654 aaKnown RBP28.52■■■□□ 2.16
SKA3-205ENST00000465471 MON2Q7Z3U7 1717 aa28.52■■■□□ 2.16
SKA3-205ENST00000465471 SSH2Q76I76 1423 aa28.52■■■□□ 2.16
SKA3-205ENST00000465471 NRKQ7Z2Y5 1582 aa28.51■■■□□ 2.15
SKA3-205ENST00000465471 CRYBG1Q9Y4K1 1723 aa28.51■■■□□ 2.15
SKA3-205ENST00000465471 NINLQ9Y2I6 1382 aa28.5■■■□□ 2.15
SKA3-205ENST00000465471 MARF1Q9Y4F3 1742 aaKnown RBP28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms