RNA–Protein interactions for RNA: ENST00000465441.1

CSPG5-204, Transcript of chondroitin sulfate proteoglycan 5, humanhuman

TSL 4

Gene CSPG5, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG5-204ENST00000465441 ABCC11Q96J66 1382 aa30.9■■■□□ 2.54
CSPG5-204ENST00000465441 ESCO1Q5FWF5 840 aa30.89■■■□□ 2.54
CSPG5-204ENST00000465441 C8orf37Q96NL8 207 aa30.89■■■□□ 2.54
CSPG5-204ENST00000465441 IFT172Q9UG01 1749 aa30.89■■■□□ 2.54
CSPG5-204ENST00000465441 RAB3GAP2Q9H2M9 1393 aa30.88■■■□□ 2.53
CSPG5-204ENST00000465441 PIK3C2GO75747 1445 aa30.87■■■□□ 2.53
CSPG5-204ENST00000465441 C14orf93Q9H972 538 aaKnown RBP30.86■■■□□ 2.53
CSPG5-204ENST00000465441 TECPR2O15040 1411 aa30.86■■■□□ 2.53
CSPG5-204ENST00000465441 LAMC1P11047 1609 aa30.85■■■□□ 2.53
CSPG5-204ENST00000465441 PLEKHH1Q9ULM0 1364 aa30.84■■■□□ 2.53
CSPG5-204ENST00000465441 NUTM2FA1L443 756 aa30.84■■■□□ 2.53
CSPG5-204ENST00000465441 ADAMTS2O95450 1211 aa30.84■■■□□ 2.53
CSPG5-204ENST00000465441 CFAP70Q5T0N1 1121 aa30.83■■■□□ 2.53
CSPG5-204ENST00000465441 QTRT2Q9H974 415 aaKnown RBP30.82■■■□□ 2.52
CSPG5-204ENST00000465441 YTHDC2Q9H6S0 1430 aaKnown RBP30.81■■■□□ 2.52
CSPG5-204ENST00000465441 SIRT1Q96EB6 747 aa30.81■■■□□ 2.52
CSPG5-204ENST00000465441 NGLY1Q96IV0 654 aa30.81■■■□□ 2.52
CSPG5-204ENST00000465441 CDC42BPGQ6DT37 1551 aa30.8■■■□□ 2.52
CSPG5-204ENST00000465441 NPHP3Q7Z494 1330 aa30.8■■■□□ 2.52
CSPG5-204ENST00000465441 FOXO3O43524 673 aa30.8■■■□□ 2.52
CSPG5-204ENST00000465441 XPCQ01831 940 aaPredicted RBP30.76■■■□□ 2.51
CSPG5-204ENST00000465441 UPF1Q92900 1129 aaKnown RBP eCLIP30.76■■■□□ 2.51
CSPG5-204ENST00000465441 DHX57Q6P158 1386 aaKnown RBP30.75■■■□□ 2.51
CSPG5-204ENST00000465441 NRXN1Q9ULB1 1477 aa30.75■■■□□ 2.51
CSPG5-204ENST00000465441 KNDC1Q76NI1 1749 aa30.74■■■□□ 2.51
CSPG5-204ENST00000465441 RBM6P78332 1123 aaKnown RBP30.74■■■□□ 2.51
CSPG5-204ENST00000465441 MYOM2P54296 1465 aa30.71■■■□□ 2.51
CSPG5-204ENST00000465441 CDK12Q9NYV4 1490 aaPredicted RBP30.71■■■□□ 2.51
CSPG5-204ENST00000465441 PXDNQ92626 1479 aa30.7■■■□□ 2.51
CSPG5-204ENST00000465441 USP21Q9UK80 565 aa30.7■■■□□ 2.51
CSPG5-204ENST00000465441 HRCP23327 699 aa30.69■■■□□ 2.5
CSPG5-204ENST00000465441 FNBP4Q8N3X1 1017 aaPredicted RBP30.69■■■□□ 2.5
CSPG5-204ENST00000465441 SAFB2Q14151 953 aaKnown RBP eCLIP30.67■■■□□ 2.5
CSPG5-204ENST00000465441 PRAM1Q96QH2 718 aa30.67■■■□□ 2.5
CSPG5-204ENST00000465441 KDM2AQ9Y2K7 1162 aa30.67■■■□□ 2.5
CSPG5-204ENST00000465441 COL22A1Q8NFW1 1626 aaPredicted RBP30.65■■■□□ 2.5
CSPG5-204ENST00000465441 KRT28Q7Z3Y7 464 aa30.64■■■□□ 2.5
CSPG5-204ENST00000465441 FMN2Q9NZ56 1722 aa30.64■■■□□ 2.5
CSPG5-204ENST00000465441 DCAF11Q8TEB1 546 aa30.63■■■□□ 2.49
CSPG5-204ENST00000465441 POGKQ9P215 609 aa30.63■■■□□ 2.49
CSPG5-204ENST00000465441 TRPC5Q9UL62 973 aaPredicted RBP30.63■■■□□ 2.49
CSPG5-204ENST00000465441 PHF8Q9UPP1 1060 aa30.61■■■□□ 2.49
CSPG5-204ENST00000465441 SPATA31A3Q5VYP0 1347 aa30.61■■■□□ 2.49
CSPG5-204ENST00000465441 RGS12O14924 1447 aa30.61■■■□□ 2.49
CSPG5-204ENST00000465441 TRAK1Q9UPV9 953 aa30.6■■■□□ 2.49
CSPG5-204ENST00000465441 STAC3Q96MF2 364 aa30.56■■■□□ 2.48
CSPG5-204ENST00000465441 PSME1Q06323 249 aa30.55■■■□□ 2.48
CSPG5-204ENST00000465441 RGPD8O14715 1765 aaPredicted RBP30.55■■■□□ 2.48
CSPG5-204ENST00000465441 DLC1Q96QB1 1528 aa30.54■■■□□ 2.48
CSPG5-204ENST00000465441 ATRNO75882 1429 aa30.54■■■□□ 2.48
CSPG5-204ENST00000465441 KIF1AQ12756 1690 aa30.53■■■□□ 2.48
CSPG5-204ENST00000465441 ADGRB1O14514 1584 aa30.53■■■□□ 2.48
CSPG5-204ENST00000465441 BCL9LQ86UU0 1499 aa30.52■■■□□ 2.48
CSPG5-204ENST00000465441 PMFBP1Q8TBY8 1022 aa30.51■■■□□ 2.47
CSPG5-204ENST00000465441 HIRIP3Q9BW71 556 aaPredicted RBP30.51■■■□□ 2.47
CSPG5-204ENST00000465441 MINK1Q8N4C8 1332 aaPredicted RBP30.47■■■□□ 2.47
CSPG5-204ENST00000465441 CABLES1Q8TDN4 633 aa30.46■■■□□ 2.47
CSPG5-204ENST00000465441 GJD4Q96KN9 370 aaPredicted RBP30.46■■■□□ 2.47
CSPG5-204ENST00000465441 MARF1Q9Y4F3 1742 aaKnown RBP30.46■■■□□ 2.47
CSPG5-204ENST00000465441 SBNO1A3KN83 1393 aa30.45■■■□□ 2.47
CSPG5-204ENST00000465441 PLEKHG5O94827 1062 aa30.45■■■□□ 2.47
CSPG5-204ENST00000465441 LMOD2Q6P5Q4 547 aa30.45■■■□□ 2.47
CSPG5-204ENST00000465441 UNC5CLQ8IV45 518 aa30.45■■■□□ 2.47
CSPG5-204ENST00000465441 TNS3Q68CZ2 1445 aa30.45■■■□□ 2.46
CSPG5-204ENST00000465441 HAP1P54257 671 aaPredicted RBP30.44■■■□□ 2.46
CSPG5-204ENST00000465441 ANKARQ7Z5J8 1434 aa30.44■■■□□ 2.46
CSPG5-204ENST00000465441 WASLO00401 505 aaPredicted RBP30.43■■■□□ 2.46
CSPG5-204ENST00000465441 USP32Q8NFA0 1604 aa30.41■■■□□ 2.46
CSPG5-204ENST00000465441 PRR36Q9H6K5 1346 aa30.41■■■□□ 2.46
CSPG5-204ENST00000465441 SLIT2O94813 1529 aa30.4■■■□□ 2.46
CSPG5-204ENST00000465441 ADGRB2O60241 1585 aa30.4■■■□□ 2.46
CSPG5-204ENST00000465441 ATAD2Q6PL18 1390 aa30.4■■■□□ 2.46
CSPG5-204ENST00000465441 ARHGEF10O15013 1369 aa30.37■■■□□ 2.45
CSPG5-204ENST00000465441 EIF3AQ14152 1382 aaKnown RBP30.35■■■□□ 2.45
CSPG5-204ENST00000465441 GPRASP1Q5JY77 1395 aa30.32■■■□□ 2.44
CSPG5-204ENST00000465441 FAM83GA6ND36 823 aa30.32■■■□□ 2.44
CSPG5-204ENST00000465441 NGDNQ8NEJ9 315 aaKnown RBP30.32■■■□□ 2.44
CSPG5-204ENST00000465441 TULP4Q9NRJ4 1543 aa30.32■■■□□ 2.44
CSPG5-204ENST00000465441 RALGAPBQ86X10 1494 aa30.31■■■□□ 2.44
CSPG5-204ENST00000465441 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.3■■■□□ 2.44
CSPG5-204ENST00000465441 NUDT16Q96DE0 195 aaKnown RBP30.3■■■□□ 2.44
CSPG5-204ENST00000465441 VPS72Q15906 364 aa30.29■■■□□ 2.44
CSPG5-204ENST00000465441 NBPF1Q3BBV0 1214 aa30.28■■■□□ 2.44
CSPG5-204ENST00000465441 GLI3P10071 1580 aa30.28■■■□□ 2.44
CSPG5-204ENST00000465441 CDK19Q9BWU1 502 aa30.27■■■□□ 2.44
CSPG5-204ENST00000465441 ARHGEF28Q8N1W1 1705 aaKnown RBP30.25■■■□□ 2.43
CSPG5-204ENST00000465441 TRPM3Q9HCF6 1732 aaPredicted RBP30.25■■■□□ 2.43
CSPG5-204ENST00000465441 PAK3O75914 559 aaPredicted RBP30.25■■■□□ 2.43
CSPG5-204ENST00000465441 CCDC9Q9Y3X0 531 aaKnown RBP30.25■■■□□ 2.43
CSPG5-204ENST00000465441 CCDC125Q86Z20 511 aa30.24■■■□□ 2.43
CSPG5-204ENST00000465441 SEPT12Q8IYM1 358 aa30.23■■■□□ 2.43
CSPG5-204ENST00000465441 ONECUT3O60422 494 aaPredicted RBP30.22■■■□□ 2.43
CSPG5-204ENST00000465441 ABCA3Q99758 1704 aa30.22■■■□□ 2.43
CSPG5-204ENST00000465441 BTG4Q9NY30 223 aa30.2■■■□□ 2.43
CSPG5-204ENST00000465441 ALS2Q96Q42 1657 aa30.2■■■□□ 2.42
CSPG5-204ENST00000465441 NWD2Q9ULI1 1742 aa30.19■■■□□ 2.42
CSPG5-204ENST00000465441 ATP7BP35670 1465 aa30.19■■■□□ 2.42
CSPG5-204ENST00000465441 PLCH1Q4KWH8 1693 aa30.18■■■□□ 2.42
CSPG5-204ENST00000465441 CCDC61Q9Y6R9 512 aa30.18■■■□□ 2.42
CSPG5-204ENST00000465441 KIAA1210Q9ULL0 1709 aa30.17■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms