RNA–Protein interactions for RNA: ENST00000463097.1

COPS3-205, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 288 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-205ENST00000463097 GUCA2AQ02747 115 aa9.68□□□□□ -0.86
COPS3-205ENST00000463097 LRRN4Q8WUT4 740 aa9.68□□□□□ -0.86
COPS3-205ENST00000463097 LMOD1P29536 600 aaPredicted RBP9.67□□□□□ -0.86
COPS3-205ENST00000463097 HLA-CQ95604 372 aa9.67□□□□□ -0.86
COPS3-205ENST00000463097 TSC1Q92574 1164 aa9.66□□□□□ -0.86
COPS3-205ENST00000463097 TFIP11Q9UBB9 837 aaKnown RBP9.66□□□□□ -0.86
COPS3-205ENST00000463097 CARNS1A5YM72 827 aa9.65□□□□□ -0.86
COPS3-205ENST00000463097 SLC10A3P09131 477 aa9.65□□□□□ -0.86
COPS3-205ENST00000463097 SOX11P35716 441 aa9.65□□□□□ -0.86
COPS3-205ENST00000463097 RBM25P49756 843 aaKnown RBP9.65□□□□□ -0.86
COPS3-205ENST00000463097 PROX2Q3B8N5 592 aa9.65□□□□□ -0.86
COPS3-205ENST00000463097 CFAP99D6REC4 459 aa9.64□□□□□ -0.87
COPS3-205ENST00000463097 UCN2Q96RP3 112 aa9.64□□□□□ -0.87
COPS3-205ENST00000463097 PRR7Q8TB68 274 aa9.63□□□□□ -0.87
COPS3-205ENST00000463097 EPS8L1Q8TE68 723 aa9.63□□□□□ -0.87
COPS3-205ENST00000463097 ZNF428Q96B54 188 aa9.63□□□□□ -0.87
COPS3-205ENST00000463097 VRTNQ9H8Y1 702 aa9.63□□□□□ -0.87
COPS3-205ENST00000463097 C6orf229H3BNL8 230 aa9.62□□□□□ -0.87
COPS3-205ENST00000463097 ATG7O95352 703 aa9.62□□□□□ -0.87
COPS3-205ENST00000463097 SWT1Q5T5J6 900 aaKnown RBP9.62□□□□□ -0.87
COPS3-205ENST00000463097 KIAA1468Q9P260 1216 aa9.62□□□□□ -0.87
COPS3-205ENST00000463097 SEMA3FQ13275 785 aa9.61□□□□□ -0.87
COPS3-205ENST00000463097 GRIPAP1Q4V328 841 aa9.61□□□□□ -0.87
COPS3-205ENST00000463097 CDCA8Q53HL2 280 aa9.61□□□□□ -0.87
COPS3-205ENST00000463097 IVNS1ABPQ9Y6Y0 642 aa9.61□□□□□ -0.87
COPS3-205ENST00000463097 TMEM88BA6NKF7 163 aa9.6□□□□□ -0.87
COPS3-205ENST00000463097 SLF2Q8IX21 1173 aa9.6□□□□□ -0.87
COPS3-205ENST00000463097 MAFBQ9Y5Q3 323 aaPredicted RBP9.6□□□□□ -0.87
COPS3-205ENST00000463097 NR6A1Q15406 480 aa9.59□□□□□ -0.87
COPS3-205ENST00000463097 PNMA1Q8ND90 353 aa9.59□□□□□ -0.87
COPS3-205ENST00000463097 KCNK17Q96T54 332 aa9.59□□□□□ -0.87
COPS3-205ENST00000463097 CCDC27Q2M243 656 aa9.58□□□□□ -0.88
COPS3-205ENST00000463097 HDGFP51858 240 aaKnown RBP9.57□□□□□ -0.88
COPS3-205ENST00000463097 FUT2Q10981 343 aa9.57□□□□□ -0.88
COPS3-205ENST00000463097 TBC1D9Q6ZT07 1266 aa9.57□□□□□ -0.88
COPS3-205ENST00000463097 KCNH8Q96L42 1107 aa9.57□□□□□ -0.88
COPS3-205ENST00000463097 E9PSI1 815 aa9.56□□□□□ -0.88
COPS3-205ENST00000463097 SLC4A3P48751 1232 aa9.56□□□□□ -0.88
COPS3-205ENST00000463097 EIF4G2P78344 907 aaKnown RBP eCLIP9.56□□□□□ -0.88
COPS3-205ENST00000463097 SND1Q7KZF4 910 aaKnown RBP eCLIP9.56□□□□□ -0.88
COPS3-205ENST00000463097 ZBED2Q9BTP6 218 aa9.56□□□□□ -0.88
COPS3-205ENST00000463097 ATP9BO43861 1147 aa9.55□□□□□ -0.88
COPS3-205ENST00000463097 POTEJP0CG39 1038 aa9.55□□□□□ -0.88
COPS3-205ENST00000463097 SYMPKQ92797 1274 aaKnown RBP9.55□□□□□ -0.88
COPS3-205ENST00000463097 AMOTL2Q9Y2J4 779 aa9.55□□□□□ -0.88
COPS3-205ENST00000463097 PER1O15534 1290 aaPredicted RBP9.54□□□□□ -0.88
COPS3-205ENST00000463097 ATP6V1AP38606 617 aa9.54□□□□□ -0.88
COPS3-205ENST00000463097 RABGEF1Q9UJ41 708 aa9.53□□□□□ -0.88
COPS3-205ENST00000463097 CFHP08603 1231 aa9.52□□□□□ -0.89
COPS3-205ENST00000463097 HOXB1P14653 301 aaPredicted RBP9.52□□□□□ -0.89
COPS3-205ENST00000463097 B4GALNT3Q6L9W6 998 aa9.52□□□□□ -0.89
COPS3-205ENST00000463097 SEPT9Q9UHD8 586 aaPredicted RBP9.52□□□□□ -0.89
COPS3-205ENST00000463097 GNEQ9Y223 722 aaKnown RBP9.52□□□□□ -0.89
COPS3-205ENST00000463097 KANK4Q5T7N3 995 aaPredicted RBP9.51□□□□□ -0.89
COPS3-205ENST00000463097 RETREG3Q86VR2 466 aa9.51□□□□□ -0.89
COPS3-205ENST00000463097 NR1H3Q13133 447 aa9.5□□□□□ -0.89
COPS3-205ENST00000463097 ELOAQ14241 798 aaKnown RBP9.5□□□□□ -0.89
COPS3-205ENST00000463097 FAM98CQ17RN3 349 aaKnown RBP9.49□□□□□ -0.89
COPS3-205ENST00000463097 DESI1Q6ICB0 168 aa9.49□□□□□ -0.89
COPS3-205ENST00000463097 PSEN2P49810 448 aa9.48□□□□□ -0.89
COPS3-205ENST00000463097 SAMD7Q7Z3H4 446 aa9.47□□□□□ -0.89
COPS3-205ENST00000463097 NFATC2IPQ8NCF5 419 aa9.47□□□□□ -0.89
COPS3-205ENST00000463097 SLC4A5Q9BY07 1137 aa9.47□□□□□ -0.89
COPS3-205ENST00000463097 SCUBE2Q9NQ36 999 aa9.47□□□□□ -0.89
COPS3-205ENST00000463097 ZBBXA8MT70 800 aa9.46□□□□□ -0.9
COPS3-205ENST00000463097 SNPHO15079 494 aa9.46□□□□□ -0.9
COPS3-205ENST00000463097 FBXO45P0C2W1 286 aa9.46□□□□□ -0.9
COPS3-205ENST00000463097 KMT5BQ4FZB7 885 aa9.46□□□□□ -0.9
COPS3-205ENST00000463097 TMEM164Q5U3C3 297 aa9.46□□□□□ -0.9
COPS3-205ENST00000463097 LYPD8Q6UX82 237 aa9.46□□□□□ -0.9
COPS3-205ENST00000463097 ZMIZ1Q9ULJ6 1067 aa9.46□□□□□ -0.9
COPS3-205ENST00000463097 PIK3CDO00329 1044 aa9.45□□□□□ -0.9
COPS3-205ENST00000463097 Q3C1V9 767 aa9.45□□□□□ -0.9
COPS3-205ENST00000463097 MORN1Q5T089 497 aa9.45□□□□□ -0.9
COPS3-205ENST00000463097 CCER1Q8TC90 406 aaPredicted RBP9.45□□□□□ -0.9
COPS3-205ENST00000463097 POTEB2H3BUK9 544 aa9.44□□□□□ -0.9
COPS3-205ENST00000463097 MAMSTRQ6ZN01 415 aa9.44□□□□□ -0.9
COPS3-205ENST00000463097 STK32AQ8WU08 396 aa9.44□□□□□ -0.9
COPS3-205ENST00000463097 NOVA2Q9UNW9 492 aaKnown RBP9.44□□□□□ -0.9
COPS3-205ENST00000463097 SLC27A5Q9Y2P5 690 aa9.44□□□□□ -0.9
COPS3-205ENST00000463097 USP17L3A6NCW0 530 aa9.43□□□□□ -0.9
COPS3-205ENST00000463097 USP17L4A6NCW7 530 aa9.43□□□□□ -0.9
COPS3-205ENST00000463097 ARHGAP33O14559 1287 aa9.43□□□□□ -0.9
COPS3-205ENST00000463097 RNF40O75150 1001 aa9.43□□□□□ -0.9
COPS3-205ENST00000463097 SKIP12755 728 aa9.43□□□□□ -0.9
COPS3-205ENST00000463097 USP17L2Q6R6M4 530 aa9.43□□□□□ -0.9
COPS3-205ENST00000463097 USP17L1Q7RTZ2 530 aa9.43□□□□□ -0.9
COPS3-205ENST00000463097 TXNDC2Q86VQ3 553 aa9.43□□□□□ -0.9
COPS3-205ENST00000463097 PLEKHM2Q8IWE5 1019 aa9.43□□□□□ -0.9
COPS3-205ENST00000463097 FKBPLQ9UIM3 349 aa9.43□□□□□ -0.9
COPS3-205ENST00000463097 IGSF3O75054 1194 aa9.42□□□□□ -0.9
COPS3-205ENST00000463097 LAPTM4BQ86VI4 370 aa9.42□□□□□ -0.9
COPS3-205ENST00000463097 USP17L5A8MUK1 530 aa9.41□□□□□ -0.9
COPS3-205ENST00000463097 ACTN4O43707 911 aaKnown RBP9.41□□□□□ -0.9
COPS3-205ENST00000463097 PUS10Q3MIT2 529 aaKnown RBP9.41□□□□□ -0.9
COPS3-205ENST00000463097 PHLDB3Q6NSJ2 640 aa9.41□□□□□ -0.9
COPS3-205ENST00000463097 MYT1LQ9UL68 1186 aa9.41□□□□□ -0.9
COPS3-205ENST00000463097 ZC3H4Q9UPT8 1303 aaKnown RBP9.39□□□□□ -0.91
COPS3-205ENST00000463097 LOC105371045A0A1W2PR82 267 aa9.39□□□□□ -0.91
COPS3-205ENST00000463097 FAM196BA6NMK8 535 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms