RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 THEMISQ8N1K5 641 aaPredicted RBP19.61■□□□□ 0.73
HDAC6-213ENST00000462730 EID1Q9Y6B2 187 aa19.61■□□□□ 0.73
HDAC6-213ENST00000462730 KNSTRNQ9Y448 316 aa19.61■□□□□ 0.73
HDAC6-213ENST00000462730 NLRP13Q86W25 1043 aa19.6■□□□□ 0.73
HDAC6-213ENST00000462730 EVC2Q86UK5 1308 aa19.6■□□□□ 0.73
HDAC6-213ENST00000462730 ABCC11Q96J66 1382 aa19.6■□□□□ 0.73
HDAC6-213ENST00000462730 POGKQ9P215 609 aa19.59■□□□□ 0.73
HDAC6-213ENST00000462730 PNISRQ8TF01 805 aaKnown RBP19.59■□□□□ 0.73
HDAC6-213ENST00000462730 CPS1P31327 1500 aa19.58■□□□□ 0.73
HDAC6-213ENST00000462730 TECPR2O15040 1411 aa19.58■□□□□ 0.72
HDAC6-213ENST00000462730 MED14O60244 1454 aa19.57■□□□□ 0.72
HDAC6-213ENST00000462730 PLEKHH1Q9ULM0 1364 aa19.56■□□□□ 0.72
HDAC6-213ENST00000462730 MINK1Q8N4C8 1332 aaPredicted RBP19.56■□□□□ 0.72
HDAC6-213ENST00000462730 SETD1BQ9UPS6 1966 aaKnown RBP19.56■□□□□ 0.72
HDAC6-213ENST00000462730 ZBED9Q6R2W3 1325 aa19.56■□□□□ 0.72
HDAC6-213ENST00000462730 AMER1Q5JTC6 1135 aaPredicted RBP19.55■□□□□ 0.72
HDAC6-213ENST00000462730 DIP2AQ14689 1571 aa19.55■□□□□ 0.72
HDAC6-213ENST00000462730 WAPLQ7Z5K2 1190 aa19.53■□□□□ 0.72
HDAC6-213ENST00000462730 PUS7Q96PZ0 661 aaKnown RBP19.53■□□□□ 0.72
HDAC6-213ENST00000462730 CABP2Q9NPB3 220 aa19.53■□□□□ 0.72
HDAC6-213ENST00000462730 FAM135BQ49AJ0 1406 aa19.52■□□□□ 0.72
HDAC6-213ENST00000462730 SLC26A8Q96RN1 970 aa19.52■□□□□ 0.72
HDAC6-213ENST00000462730 NPC1L1Q9UHC9 1359 aa19.52■□□□□ 0.72
HDAC6-213ENST00000462730 SRPK2P78362 688 aaKnown RBP19.51■□□□□ 0.71
HDAC6-213ENST00000462730 SLC12A5Q9H2X9 1139 aa19.5■□□□□ 0.71
HDAC6-213ENST00000462730 PTPRUQ92729 1446 aa19.49■□□□□ 0.71
HDAC6-213ENST00000462730 ATAD2Q6PL18 1390 aa19.49■□□□□ 0.71
HDAC6-213ENST00000462730 CARD14Q9BXL6 1004 aa19.49■□□□□ 0.71
HDAC6-213ENST00000462730 ROBO2Q9HCK4 1378 aa19.49■□□□□ 0.71
HDAC6-213ENST00000462730 NSD3Q9BZ95 1437 aa19.48■□□□□ 0.71
HDAC6-213ENST00000462730 SIRT1Q96EB6 747 aa19.48■□□□□ 0.71
HDAC6-213ENST00000462730 NINLQ9Y2I6 1382 aa19.47■□□□□ 0.71
HDAC6-213ENST00000462730 PPP2R1AP30153 589 aa19.47■□□□□ 0.71
HDAC6-213ENST00000462730 TBX22Q9Y458 520 aa19.47■□□□□ 0.71
HDAC6-213ENST00000462730 ANKRD36BQ8N2N9 1353 aa19.47■□□□□ 0.71
HDAC6-213ENST00000462730 USP32Q8NFA0 1604 aa19.47■□□□□ 0.71
HDAC6-213ENST00000462730 CDK19Q9BWU1 502 aa19.46■□□□□ 0.71
HDAC6-213ENST00000462730 XRN1Q8IZH2 1706 aaKnown RBP19.45■□□□□ 0.7
HDAC6-213ENST00000462730 ANKLE2Q86XL3 938 aa19.44■□□□□ 0.7
HDAC6-213ENST00000462730 PTCH1Q13635 1447 aa19.44■□□□□ 0.7
HDAC6-213ENST00000462730 ADGRB2O60241 1585 aa19.44■□□□□ 0.7
HDAC6-213ENST00000462730 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.43■□□□□ 0.7
HDAC6-213ENST00000462730 A0A1W2PP64 1363 aa19.43■□□□□ 0.7
HDAC6-213ENST00000462730 TSHZ2Q9NRE2 1034 aa19.43■□□□□ 0.7
HDAC6-213ENST00000462730 NEFLP07196 543 aa19.42■□□□□ 0.7
HDAC6-213ENST00000462730 CD163L1Q9NR16 1453 aa19.41■□□□□ 0.7
HDAC6-213ENST00000462730 AMOTL2Q9Y2J4 779 aa19.41■□□□□ 0.7
HDAC6-213ENST00000462730 SENP3-EIF4A1A0A087X0R7 540 aa19.41■□□□□ 0.7
HDAC6-213ENST00000462730 WASLO00401 505 aaPredicted RBP19.41■□□□□ 0.7
HDAC6-213ENST00000462730 FKBP8Q14318 412 aa19.4■□□□□ 0.7
HDAC6-213ENST00000462730 PIK3R4Q99570 1358 aa19.4■□□□□ 0.7
HDAC6-213ENST00000462730 INSRP06213 1382 aa19.38■□□□□ 0.69
HDAC6-213ENST00000462730 BLMP54132 1417 aaPredicted RBP19.38■□□□□ 0.69
HDAC6-213ENST00000462730 ATP7BP35670 1465 aa19.37■□□□□ 0.69
HDAC6-213ENST00000462730 NPHP4O75161 1426 aaPredicted RBP19.37■□□□□ 0.69
HDAC6-213ENST00000462730 CHD2O14647 1828 aaKnown RBP19.37■□□□□ 0.69
HDAC6-213ENST00000462730 CGNL1Q0VF96 1302 aa19.36■□□□□ 0.69
HDAC6-213ENST00000462730 CABP1Q9NZU7 370 aa19.36■□□□□ 0.69
HDAC6-213ENST00000462730 SMG6Q86US8 1419 aaKnown RBP19.36■□□□□ 0.69
HDAC6-213ENST00000462730 TERF2IPQ9NYB0 399 aa19.35■□□□□ 0.69
HDAC6-213ENST00000462730 PPIP5K1Q6PFW1 1433 aa19.35■□□□□ 0.69
HDAC6-213ENST00000462730 MORC1Q86VD1 984 aa19.34■□□□□ 0.69
HDAC6-213ENST00000462730 TOPAZ1Q8N9V7 1692 aa19.34■□□□□ 0.69
HDAC6-213ENST00000462730 NSD2O96028 1365 aa19.34■□□□□ 0.69
HDAC6-213ENST00000462730 KCNA6P17658 529 aa19.33■□□□□ 0.69
HDAC6-213ENST00000462730 WDR43Q15061 677 aaKnown RBP eCLIP19.33■□□□□ 0.69
HDAC6-213ENST00000462730 HDGFL2Q7Z4V5 671 aaPredicted RBP19.33■□□□□ 0.68
HDAC6-213ENST00000462730 CDC42BPGQ6DT37 1551 aa19.33■□□□□ 0.68
HDAC6-213ENST00000462730 NUDT16Q96DE0 195 aaKnown RBP19.32■□□□□ 0.68
HDAC6-213ENST00000462730 ANKRD26Q9UPS8 1709 aa19.32■□□□□ 0.68
HDAC6-213ENST00000462730 NUDCQ9Y266 331 aa19.32■□□□□ 0.68
HDAC6-213ENST00000462730 KIF20BQ96Q89 1820 aa19.31■□□□□ 0.68
HDAC6-213ENST00000462730 ADAMTS8Q9UP79 889 aa19.31■□□□□ 0.68
HDAC6-213ENST00000462730 PRR36Q9H6K5 1346 aa19.31■□□□□ 0.68
HDAC6-213ENST00000462730 ITSN1Q15811 1721 aa19.31■□□□□ 0.68
HDAC6-213ENST00000462730 KDM4FA0A1W2PPD8 638 aa19.3■□□□□ 0.68
HDAC6-213ENST00000462730 NCKAP5LQ9HCH0 1330 aa19.3■□□□□ 0.68
HDAC6-213ENST00000462730 CPSF1Q10570 1443 aaKnown RBP19.29■□□□□ 0.68
HDAC6-213ENST00000462730 MON2Q7Z3U7 1717 aa19.29■□□□□ 0.68
HDAC6-213ENST00000462730 AKAP12Q02952 1782 aa19.29■□□□□ 0.68
HDAC6-213ENST00000462730 SALL2Q9Y467 1007 aaPredicted RBP19.29■□□□□ 0.68
HDAC6-213ENST00000462730 CCDC61Q9Y6R9 512 aa19.29■□□□□ 0.68
HDAC6-213ENST00000462730 NALCNQ8IZF0 1738 aa19.28■□□□□ 0.68
HDAC6-213ENST00000462730 TNNT2P45379 298 aaPredicted RBP19.28■□□□□ 0.68
HDAC6-213ENST00000462730 NWD1Q149M9 1564 aa19.27■□□□□ 0.68
HDAC6-213ENST00000462730 POLR3AO14802 1390 aaPredicted RBP19.26■□□□□ 0.67
HDAC6-213ENST00000462730 NKTRP30414 1462 aaKnown RBP19.25■□□□□ 0.67
HDAC6-213ENST00000462730 NUTM2FA1L443 756 aa19.25■□□□□ 0.67
HDAC6-213ENST00000462730 EDC4Q6P2E9 1401 aaKnown RBP19.25■□□□□ 0.67
HDAC6-213ENST00000462730 GGNBP2Q9H3C7 697 aa19.24■□□□□ 0.67
HDAC6-213ENST00000462730 FMN2Q9NZ56 1722 aa19.24■□□□□ 0.67
HDAC6-213ENST00000462730 FYB1O15117 783 aa19.24■□□□□ 0.67
HDAC6-213ENST00000462730 IRX6P78412 446 aaPredicted RBP19.24■□□□□ 0.67
HDAC6-213ENST00000462730 NRKQ7Z2Y5 1582 aa19.23■□□□□ 0.67
HDAC6-213ENST00000462730 RGPD8O14715 1765 aaPredicted RBP19.23■□□□□ 0.67
HDAC6-213ENST00000462730 PDE3BQ13370 1112 aa19.23■□□□□ 0.67
HDAC6-213ENST00000462730 LMTK3Q96Q04 1460 aa19.22■□□□□ 0.67
HDAC6-213ENST00000462730 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.21■□□□□ 0.67
HDAC6-213ENST00000462730 HSPA2P54652 639 aa19.2■□□□□ 0.66
HDAC6-213ENST00000462730 SHPRHQ149N8 1683 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms