RNA–Protein interactions for RNA: ENST00000462352.5

CPNE1-221, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 625 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-221ENST00000462352 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.74■□□□□ 0.27
CPNE1-221ENST00000462352 EIF3AQ14152 1382 aaKnown RBP16.72■□□□□ 0.27
CPNE1-221ENST00000462352 CENPJQ9HC77 1338 aaPredicted RBP16.71■□□□□ 0.27
CPNE1-221ENST00000462352 DCCP43146 1447 aa16.71■□□□□ 0.27
CPNE1-221ENST00000462352 UBAP1LF5GYI3 381 aa16.71■□□□□ 0.27
CPNE1-221ENST00000462352 ATF3P18847 181 aa16.7■□□□□ 0.26
CPNE1-221ENST00000462352 CADPS2Q86UW7 1296 aa16.7■□□□□ 0.26
CPNE1-221ENST00000462352 MINK1Q8N4C8 1332 aaPredicted RBP16.7■□□□□ 0.26
CPNE1-221ENST00000462352 CDC42BPGQ6DT37 1551 aa16.69■□□□□ 0.26
CPNE1-221ENST00000462352 TOM1O60784 492 aa16.69■□□□□ 0.26
CPNE1-221ENST00000462352 HIRIP3Q9BW71 556 aaPredicted RBP16.68■□□□□ 0.26
CPNE1-221ENST00000462352 ADGRB2O60241 1585 aa16.68■□□□□ 0.26
CPNE1-221ENST00000462352 USP47Q96K76 1375 aa16.67■□□□□ 0.26
CPNE1-221ENST00000462352 QRICH2Q9H0J4 1663 aa16.67■□□□□ 0.26
CPNE1-221ENST00000462352 MST1RQ04912 1400 aa16.66■□□□□ 0.26
CPNE1-221ENST00000462352 SLAIN2Q9P270 581 aa16.65■□□□□ 0.26
CPNE1-221ENST00000462352 ST20-MTHFSA0A0A6YYL1 179 aa16.64■□□□□ 0.25
CPNE1-221ENST00000462352 WASLO00401 505 aaPredicted RBP16.64■□□□□ 0.25
CPNE1-221ENST00000462352 PIP4K2BP78356 416 aa16.64■□□□□ 0.25
CPNE1-221ENST00000462352 FMN2Q9NZ56 1722 aa16.63■□□□□ 0.25
CPNE1-221ENST00000462352 FBXO41Q8TF61 875 aa16.63■□□□□ 0.25
CPNE1-221ENST00000462352 SBNO2Q9Y2G9 1366 aa16.63■□□□□ 0.25
CPNE1-221ENST00000462352 C1orf167Q5SNV9 1468 aa16.62■□□□□ 0.25
CPNE1-221ENST00000462352 NUTM2FA1L443 756 aa16.62■□□□□ 0.25
CPNE1-221ENST00000462352 SCAF1Q9H7N4 1312 aaKnown RBP16.62■□□□□ 0.25
CPNE1-221ENST00000462352 ZEB1P37275 1124 aaPredicted RBP16.61■□□□□ 0.25
CPNE1-221ENST00000462352 CDK19Q9BWU1 502 aa16.61■□□□□ 0.25
CPNE1-221ENST00000462352 TULP4Q9NRJ4 1543 aa16.6■□□□□ 0.25
CPNE1-221ENST00000462352 EIF4G2P78344 907 aaKnown RBP eCLIP16.6■□□□□ 0.25
CPNE1-221ENST00000462352 TESK2Q96S53 571 aa16.6■□□□□ 0.25
CPNE1-221ENST00000462352 HSPA5P11021 654 aaKnown RBP16.59■□□□□ 0.25
CPNE1-221ENST00000462352 EVC2Q86UK5 1308 aa16.59■□□□□ 0.25
CPNE1-221ENST00000462352 BRINP3Q76B58 766 aa16.58■□□□□ 0.24
CPNE1-221ENST00000462352 ORAI2Q96SN7 254 aa16.58■□□□□ 0.24
CPNE1-221ENST00000462352 PRR36Q9H6K5 1346 aa16.58■□□□□ 0.24
CPNE1-221ENST00000462352 ANKARQ7Z5J8 1434 aa16.58■□□□□ 0.24
CPNE1-221ENST00000462352 ROBO1Q9Y6N7 1651 aa16.58■□□□□ 0.24
CPNE1-221ENST00000462352 USP32Q8NFA0 1604 aa16.57■□□□□ 0.24
CPNE1-221ENST00000462352 SRPK2P78362 688 aaKnown RBP16.57■□□□□ 0.24
CPNE1-221ENST00000462352 CABP2Q9NPB3 220 aa16.57■□□□□ 0.24
CPNE1-221ENST00000462352 ATP7BP35670 1465 aa16.56■□□□□ 0.24
CPNE1-221ENST00000462352 SLC24A1O60721 1099 aa16.56■□□□□ 0.24
CPNE1-221ENST00000462352 ESCO1Q5FWF5 840 aa16.56■□□□□ 0.24
CPNE1-221ENST00000462352 NUDT16Q96DE0 195 aaKnown RBP16.56■□□□□ 0.24
CPNE1-221ENST00000462352 RGPD8O14715 1765 aaPredicted RBP16.54■□□□□ 0.24
CPNE1-221ENST00000462352 TMF1P82094 1093 aa16.53■□□□□ 0.24
CPNE1-221ENST00000462352 DISP3Q9P2K9 1392 aa16.52■□□□□ 0.24
CPNE1-221ENST00000462352 PHF8Q9UPP1 1060 aa16.52■□□□□ 0.24
CPNE1-221ENST00000462352 CCDC61Q9Y6R9 512 aa16.52■□□□□ 0.24
CPNE1-221ENST00000462352 KIF1AQ12756 1690 aa16.51■□□□□ 0.23
CPNE1-221ENST00000462352 TOPAZ1Q8N9V7 1692 aa16.51■□□□□ 0.23
CPNE1-221ENST00000462352 PMFBP1Q8TBY8 1022 aa16.51■□□□□ 0.23
CPNE1-221ENST00000462352 ITSN1Q15811 1721 aa16.5■□□□□ 0.23
CPNE1-221ENST00000462352 AHDC1Q5TGY3 1603 aaPredicted RBP16.5■□□□□ 0.23
CPNE1-221ENST00000462352 DDX17Q92841 729 aaKnown RBP16.5■□□□□ 0.23
CPNE1-221ENST00000462352 PUS7Q96PZ0 661 aaKnown RBP16.5■□□□□ 0.23
CPNE1-221ENST00000462352 ATAD2Q6PL18 1390 aa16.5■□□□□ 0.23
CPNE1-221ENST00000462352 NHSL1Q5SYE7 1610 aa16.49■□□□□ 0.23
CPNE1-221ENST00000462352 FOXO3O43524 673 aa16.49■□□□□ 0.23
CPNE1-221ENST00000462352 HSPA1LP34931 641 aa16.49■□□□□ 0.23
CPNE1-221ENST00000462352 PPIP5K1Q6PFW1 1433 aa16.49■□□□□ 0.23
CPNE1-221ENST00000462352 ILDR1Q86SU0 546 aaPredicted RBP16.49■□□□□ 0.23
CPNE1-221ENST00000462352 PHF23Q9BUL5 403 aaPredicted RBP16.49■□□□□ 0.23
CPNE1-221ENST00000462352 PLEKHG3A1L390 1219 aa16.48■□□□□ 0.23
CPNE1-221ENST00000462352 NPHP3Q7Z494 1330 aa16.47■□□□□ 0.23
CPNE1-221ENST00000462352 CDCA8Q53HL2 280 aa16.47■□□□□ 0.23
CPNE1-221ENST00000462352 CABP1Q9NZU7 370 aa16.47■□□□□ 0.23
CPNE1-221ENST00000462352 PHLPP1O60346 1717 aa16.47■□□□□ 0.23
CPNE1-221ENST00000462352 NGDNQ8NEJ9 315 aaKnown RBP16.46■□□□□ 0.23
CPNE1-221ENST00000462352 ACEP12821 1306 aa16.45■□□□□ 0.22
CPNE1-221ENST00000462352 XPCQ01831 940 aaPredicted RBP16.45■□□□□ 0.22
CPNE1-221ENST00000462352 POLR3AO14802 1390 aaPredicted RBP16.45■□□□□ 0.22
CPNE1-221ENST00000462352 PXDNQ92626 1479 aa16.45■□□□□ 0.22
CPNE1-221ENST00000462352 COL16A1Q07092 1604 aaPredicted RBP16.45■□□□□ 0.22
CPNE1-221ENST00000462352 SOS2Q07890 1332 aaPredicted RBP16.45■□□□□ 0.22
CPNE1-221ENST00000462352 C11orf95C9JLR9 678 aaPredicted RBP16.44■□□□□ 0.22
CPNE1-221ENST00000462352 PSME1Q06323 249 aa16.44■□□□□ 0.22
CPNE1-221ENST00000462352 TMC1Q8TDI8 760 aa16.44■□□□□ 0.22
CPNE1-221ENST00000462352 KRT28Q7Z3Y7 464 aa16.43■□□□□ 0.22
CPNE1-221ENST00000462352 SLC12A5Q9H2X9 1139 aa16.43■□□□□ 0.22
CPNE1-221ENST00000462352 NINLQ9Y2I6 1382 aa16.41■□□□□ 0.22
CPNE1-221ENST00000462352 LRRC59Q96AG4 307 aaKnown RBP16.41■□□□□ 0.22
CPNE1-221ENST00000462352 POLR3GLQ9BT43 218 aa16.41■□□□□ 0.22
CPNE1-221ENST00000462352 CD163L1Q9NR16 1453 aa16.4■□□□□ 0.22
CPNE1-221ENST00000462352 CPSF1Q10570 1443 aaKnown RBP16.39■□□□□ 0.21
CPNE1-221ENST00000462352 KIF7Q2M1P5 1343 aa16.39■□□□□ 0.21
CPNE1-221ENST00000462352 SBNO1A3KN83 1393 aa16.38■□□□□ 0.21
CPNE1-221ENST00000462352 USP6P35125 1406 aa16.38■□□□□ 0.21
CPNE1-221ENST00000462352 ZNF692Q9BU19 519 aaPredicted RBP16.38■□□□□ 0.21
CPNE1-221ENST00000462352 TRPM3Q9HCF6 1732 aaPredicted RBP16.38■□□□□ 0.21
CPNE1-221ENST00000462352 SPATA31A3Q5VYP0 1347 aa16.38■□□□□ 0.21
CPNE1-221ENST00000462352 TNS3Q68CZ2 1445 aa16.37■□□□□ 0.21
CPNE1-221ENST00000462352 MYOM1P52179 1685 aa16.37■□□□□ 0.21
CPNE1-221ENST00000462352 AKAP12Q02952 1782 aa16.37■□□□□ 0.21
CPNE1-221ENST00000462352 HDGFL2Q7Z4V5 671 aaPredicted RBP16.37■□□□□ 0.21
CPNE1-221ENST00000462352 TERF2IPQ9NYB0 399 aa16.37■□□□□ 0.21
CPNE1-221ENST00000462352 A0A1W2PP64 1363 aa16.37■□□□□ 0.21
CPNE1-221ENST00000462352 KTN1Q86UP2 1357 aaKnown RBP16.37■□□□□ 0.21
CPNE1-221ENST00000462352 JCADQ9P266 1359 aa16.37■□□□□ 0.21
CPNE1-221ENST00000462352 PAK3O75914 559 aaPredicted RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms