RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 TMEM132EQ6IEE7 984 aa17.1■□□□□ 0.33
VPS52-213ENST00000461743 TONSLQ96HA7 1378 aa17.1■□□□□ 0.33
VPS52-213ENST00000461743 ITSN1Q15811 1721 aa17.1■□□□□ 0.33
VPS52-213ENST00000461743 L3MBTL2Q969R5 705 aa17.09■□□□□ 0.33
VPS52-213ENST00000461743 COL16A1Q07092 1604 aaPredicted RBP17.09■□□□□ 0.33
VPS52-213ENST00000461743 QRICH2Q9H0J4 1663 aa17.08■□□□□ 0.32
VPS52-213ENST00000461743 SLAIN2Q9P270 581 aa17.08■□□□□ 0.32
VPS52-213ENST00000461743 RGPD8O14715 1765 aaPredicted RBP17.07■□□□□ 0.32
VPS52-213ENST00000461743 NEUROD1Q13562 356 aa17.07■□□□□ 0.32
VPS52-213ENST00000461743 STK26Q9P289 416 aa17.06■□□□□ 0.32
VPS52-213ENST00000461743 SHPRHQ149N8 1683 aa17.06■□□□□ 0.32
VPS52-213ENST00000461743 C1orf167Q5SNV9 1468 aa17.05■□□□□ 0.32
VPS52-213ENST00000461743 RALGAPBQ86X10 1494 aa17.05■□□□□ 0.32
VPS52-213ENST00000461743 PLEKHH1Q9ULM0 1364 aa17.05■□□□□ 0.32
VPS52-213ENST00000461743 USP32Q8NFA0 1604 aa17.03■□□□□ 0.32
VPS52-213ENST00000461743 EIF3AQ14152 1382 aaKnown RBP17.02■□□□□ 0.32
VPS52-213ENST00000461743 GPRASP1Q5JY77 1395 aa17.02■□□□□ 0.32
VPS52-213ENST00000461743 TOPAZ1Q8N9V7 1692 aa17.02■□□□□ 0.32
VPS52-213ENST00000461743 HSPA1LP34931 641 aa17.02■□□□□ 0.32
VPS52-213ENST00000461743 TULP4Q9NRJ4 1543 aa17.01■□□□□ 0.31
VPS52-213ENST00000461743 WAPLQ7Z5K2 1190 aa17.01■□□□□ 0.31
VPS52-213ENST00000461743 PRAM1Q96QH2 718 aa17.01■□□□□ 0.31
VPS52-213ENST00000461743 ANKARQ7Z5J8 1434 aa17.01■□□□□ 0.31
VPS52-213ENST00000461743 POGKQ9P215 609 aa17■□□□□ 0.31
VPS52-213ENST00000461743 TRAK1Q9UPV9 953 aa17■□□□□ 0.31
VPS52-213ENST00000461743 ROCK2O75116 1388 aaKnown RBP17■□□□□ 0.31
VPS52-213ENST00000461743 BRINP3Q76B58 766 aa16.99■□□□□ 0.31
VPS52-213ENST00000461743 TIMELESSQ9UNS1 1208 aa16.99■□□□□ 0.31
VPS52-213ENST00000461743 MED1Q15648 1581 aaPredicted RBP16.98■□□□□ 0.31
VPS52-213ENST00000461743 NBPF1Q3BBV0 1214 aa16.96■□□□□ 0.31
VPS52-213ENST00000461743 COL22A1Q8NFW1 1626 aaPredicted RBP16.95■□□□□ 0.3
VPS52-213ENST00000461743 JCADQ9P266 1359 aa16.94■□□□□ 0.3
VPS52-213ENST00000461743 CENPJQ9HC77 1338 aaPredicted RBP16.94■□□□□ 0.3
VPS52-213ENST00000461743 ATP7BP35670 1465 aa16.93■□□□□ 0.3
VPS52-213ENST00000461743 NBPF8Q3BBV2 869 aa16.93■□□□□ 0.3
VPS52-213ENST00000461743 PXDNQ92626 1479 aa16.93■□□□□ 0.3
VPS52-213ENST00000461743 SBNO2Q9Y2G9 1366 aa16.92■□□□□ 0.3
VPS52-213ENST00000461743 SAFB2Q14151 953 aaKnown RBP eCLIP16.92■□□□□ 0.3
VPS52-213ENST00000461743 CCER1Q8TC90 406 aaPredicted RBP16.91■□□□□ 0.3
VPS52-213ENST00000461743 NPHP3Q7Z494 1330 aa16.91■□□□□ 0.3
VPS52-213ENST00000461743 MINK1Q8N4C8 1332 aaPredicted RBP16.91■□□□□ 0.3
VPS52-213ENST00000461743 TRPM3Q9HCF6 1732 aaPredicted RBP16.9■□□□□ 0.3
VPS52-213ENST00000461743 WASLO00401 505 aaPredicted RBP16.9■□□□□ 0.3
VPS52-213ENST00000461743 MARF1Q9Y4F3 1742 aaKnown RBP16.9■□□□□ 0.3
VPS52-213ENST00000461743 SOS2Q07890 1332 aaPredicted RBP16.89■□□□□ 0.29
VPS52-213ENST00000461743 ESCO1Q5FWF5 840 aa16.88■□□□□ 0.29
VPS52-213ENST00000461743 ORAI2Q96SN7 254 aa16.88■□□□□ 0.29
VPS52-213ENST00000461743 ABCA3Q99758 1704 aa16.87■□□□□ 0.29
VPS52-213ENST00000461743 ALS2Q96Q42 1657 aa16.87■□□□□ 0.29
VPS52-213ENST00000461743 HIRIP3Q9BW71 556 aaPredicted RBP16.86■□□□□ 0.29
VPS52-213ENST00000461743 CARD11Q9BXL7 1154 aa16.86■□□□□ 0.29
VPS52-213ENST00000461743 SPATA31A6Q5VVP1 1343 aa16.86■□□□□ 0.29
VPS52-213ENST00000461743 AKAP12Q02952 1782 aa16.86■□□□□ 0.29
VPS52-213ENST00000461743 LRRC59Q96AG4 307 aaKnown RBP16.85■□□□□ 0.29
VPS52-213ENST00000461743 PHF8Q9UPP1 1060 aa16.84■□□□□ 0.29
VPS52-213ENST00000461743 PNPLA6Q8IY17 1366 aa16.84■□□□□ 0.29
VPS52-213ENST00000461743 NUTM2FA1L443 756 aa16.83■□□□□ 0.28
VPS52-213ENST00000461743 TNS3Q68CZ2 1445 aa16.83■□□□□ 0.28
VPS52-213ENST00000461743 PRR36Q9H6K5 1346 aa16.83■□□□□ 0.28
VPS52-213ENST00000461743 CRYBG1Q9Y4K1 1723 aa16.82■□□□□ 0.28
VPS52-213ENST00000461743 LRP6O75581 1613 aa16.81■□□□□ 0.28
VPS52-213ENST00000461743 SBNO1A3KN83 1393 aa16.81■□□□□ 0.28
VPS52-213ENST00000461743 EVC2Q86UK5 1308 aa16.81■□□□□ 0.28
VPS52-213ENST00000461743 CDK19Q9BWU1 502 aa16.81■□□□□ 0.28
VPS52-213ENST00000461743 MON2Q7Z3U7 1717 aa16.81■□□□□ 0.28
VPS52-213ENST00000461743 POLR3AO14802 1390 aaPredicted RBP16.8■□□□□ 0.28
VPS52-213ENST00000461743 FOXO3O43524 673 aa16.79■□□□□ 0.28
VPS52-213ENST00000461743 SLC24A1O60721 1099 aa16.79■□□□□ 0.28
VPS52-213ENST00000461743 DDX17Q92841 729 aaKnown RBP16.79■□□□□ 0.28
VPS52-213ENST00000461743 NUDT16Q96DE0 195 aaKnown RBP16.79■□□□□ 0.28
VPS52-213ENST00000461743 NRKQ7Z2Y5 1582 aa16.79■□□□□ 0.28
VPS52-213ENST00000461743 PPIP5K1Q6PFW1 1433 aa16.79■□□□□ 0.28
VPS52-213ENST00000461743 ATAD2Q6PL18 1390 aa16.78■□□□□ 0.28
VPS52-213ENST00000461743 USP47Q96K76 1375 aa16.78■□□□□ 0.28
VPS52-213ENST00000461743 PSME1Q06323 249 aa16.78■□□□□ 0.28
VPS52-213ENST00000461743 ARHGEF10O15013 1369 aa16.77■□□□□ 0.28
VPS52-213ENST00000461743 BRD4O60885 1362 aaPredicted RBP16.77■□□□□ 0.28
VPS52-213ENST00000461743 DISP3Q9P2K9 1392 aa16.77■□□□□ 0.28
VPS52-213ENST00000461743 CCDC61Q9Y6R9 512 aa16.77■□□□□ 0.28
VPS52-213ENST00000461743 PHRF1Q9P1Y6 1649 aaKnown RBP16.77■□□□□ 0.27
VPS52-213ENST00000461743 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.76■□□□□ 0.27
VPS52-213ENST00000461743 SPATA31A3Q5VYP0 1347 aa16.76■□□□□ 0.27
VPS52-213ENST00000461743 SRPK2P78362 688 aaKnown RBP16.76■□□□□ 0.27
VPS52-213ENST00000461743 PLEKHG3A1L390 1219 aa16.75■□□□□ 0.27
VPS52-213ENST00000461743 USP54Q70EL1 1684 aa16.75■□□□□ 0.27
VPS52-213ENST00000461743 NWD2Q9ULI1 1742 aa16.74■□□□□ 0.27
VPS52-213ENST00000461743 KRT28Q7Z3Y7 464 aa16.74■□□□□ 0.27
VPS52-213ENST00000461743 PMFBP1Q8TBY8 1022 aa16.74■□□□□ 0.27
VPS52-213ENST00000461743 NGDNQ8NEJ9 315 aaKnown RBP16.73■□□□□ 0.27
VPS52-213ENST00000461743 PUS7Q96PZ0 661 aaKnown RBP16.73■□□□□ 0.27
VPS52-213ENST00000461743 PLCH1Q4KWH8 1693 aa16.72■□□□□ 0.27
VPS52-213ENST00000461743 PHF23Q9BUL5 403 aaPredicted RBP16.72■□□□□ 0.27
VPS52-213ENST00000461743 CABP2Q9NPB3 220 aa16.72■□□□□ 0.27
VPS52-213ENST00000461743 NINLQ9Y2I6 1382 aa16.72■□□□□ 0.27
VPS52-213ENST00000461743 MYOM1P52179 1685 aa16.72■□□□□ 0.27
VPS52-213ENST00000461743 XPCQ01831 940 aaPredicted RBP16.71■□□□□ 0.27
VPS52-213ENST00000461743 PIK3C2AO00443 1686 aa16.71■□□□□ 0.27
VPS52-213ENST00000461743 USP6P35125 1406 aa16.7■□□□□ 0.26
VPS52-213ENST00000461743 TESK2Q96S53 571 aa16.7■□□□□ 0.26
VPS52-213ENST00000461743 ACEP12821 1306 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms