RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 RASEFQ8IZ41 740 aa13.17□□□□□ -0.3
HDAC9-220ENST00000461409 PIK3R4Q99570 1358 aa13.17□□□□□ -0.3
HDAC9-220ENST00000461409 NCOA3Q9Y6Q9 1424 aa13.16□□□□□ -0.3
HDAC9-220ENST00000461409 RBM33Q96EV2 1170 aaKnown RBP13.16□□□□□ -0.3
HDAC9-220ENST00000461409 NUBP1P53384 320 aa13.15□□□□□ -0.3
HDAC9-220ENST00000461409 PHF12Q96QT6 1004 aa13.15□□□□□ -0.3
HDAC9-220ENST00000461409 ADAMTS13Q76LX8 1427 aa13.14□□□□□ -0.31
HDAC9-220ENST00000461409 NUTM2DQ5VT03 806 aaPredicted RBP13.14□□□□□ -0.31
HDAC9-220ENST00000461409 TSPYL2Q9H2G4 693 aaPredicted RBP13.14□□□□□ -0.31
HDAC9-220ENST00000461409 SLAIN2Q9P270 581 aa13.14□□□□□ -0.31
HDAC9-220ENST00000461409 CHD2O14647 1828 aaKnown RBP13.13□□□□□ -0.31
HDAC9-220ENST00000461409 ROBO1Q9Y6N7 1651 aa13.13□□□□□ -0.31
HDAC9-220ENST00000461409 C14orf37Q86TY3 774 aa13.13□□□□□ -0.31
HDAC9-220ENST00000461409 TRPM2O94759 1503 aa13.13□□□□□ -0.31
HDAC9-220ENST00000461409 NAIPQ13075 1403 aa13.13□□□□□ -0.31
HDAC9-220ENST00000461409 CCDC61Q9Y6R9 512 aa13.12□□□□□ -0.31
HDAC9-220ENST00000461409 SPHKAPQ2M3C7 1700 aa13.12□□□□□ -0.31
HDAC9-220ENST00000461409 ZNF326Q5BKZ1 582 aaKnown RBP13.11□□□□□ -0.31
HDAC9-220ENST00000461409 CADPS2Q86UW7 1296 aa13.1□□□□□ -0.31
HDAC9-220ENST00000461409 C19orf44Q9H6X5 657 aa13.1□□□□□ -0.31
HDAC9-220ENST00000461409 HFM1A2PYH4 1435 aa13.1□□□□□ -0.31
HDAC9-220ENST00000461409 ATF3P18847 181 aa13.09□□□□□ -0.31
HDAC9-220ENST00000461409 AMOTL2Q9Y2J4 779 aa13.09□□□□□ -0.31
HDAC9-220ENST00000461409 SETBP1Q9Y6X0 1596 aa13.09□□□□□ -0.31
HDAC9-220ENST00000461409 JCADQ9P266 1359 aa13.07□□□□□ -0.32
HDAC9-220ENST00000461409 CLTCL1P53675 1640 aa13.06□□□□□ -0.32
HDAC9-220ENST00000461409 TRIM52Q96A61 297 aa13.06□□□□□ -0.32
HDAC9-220ENST00000461409 DCCP43146 1447 aa13.05□□□□□ -0.32
HDAC9-220ENST00000461409 PTPRUQ92729 1446 aa13.05□□□□□ -0.32
HDAC9-220ENST00000461409 PHLPP1O60346 1717 aa13.05□□□□□ -0.32
HDAC9-220ENST00000461409 NRXN3Q9Y4C0 1643 aa13.05□□□□□ -0.32
HDAC9-220ENST00000461409 NEXMIFQ5QGS0 1516 aa13.04□□□□□ -0.32
HDAC9-220ENST00000461409 XRN1Q8IZH2 1706 aaKnown RBP13.04□□□□□ -0.32
HDAC9-220ENST00000461409 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.04□□□□□ -0.32
HDAC9-220ENST00000461409 VGFO15240 615 aaPredicted RBP13.03□□□□□ -0.32
HDAC9-220ENST00000461409 IFNLR1Q8IU57 520 aaPredicted RBP13.03□□□□□ -0.32
HDAC9-220ENST00000461409 RGS17Q9UGC6 210 aaPredicted RBP13.03□□□□□ -0.32
HDAC9-220ENST00000461409 METP08581 1390 aa13.03□□□□□ -0.32
HDAC9-220ENST00000461409 RPGRIP1LQ68CZ1 1315 aa13.02□□□□□ -0.33
HDAC9-220ENST00000461409 AHDC1Q5TGY3 1603 aaPredicted RBP13.02□□□□□ -0.33
HDAC9-220ENST00000461409 KIF1BO60333 1816 aa13.02□□□□□ -0.33
HDAC9-220ENST00000461409 KLHL34Q8N239 644 aa13.01□□□□□ -0.33
HDAC9-220ENST00000461409 FAM212AQ96EL1 285 aa13.01□□□□□ -0.33
HDAC9-220ENST00000461409 SPATA31A6Q5VVP1 1343 aa13.01□□□□□ -0.33
HDAC9-220ENST00000461409 COL16A1Q07092 1604 aaPredicted RBP13.01□□□□□ -0.33
HDAC9-220ENST00000461409 BRINP3Q76B58 766 aa13□□□□□ -0.33
HDAC9-220ENST00000461409 KIF12Q96FN5 646 aa13□□□□□ -0.33
HDAC9-220ENST00000461409 MS4A3Q96HJ5 214 aa13□□□□□ -0.33
HDAC9-220ENST00000461409 ADGRL3Q9HAR2 1447 aa12.99□□□□□ -0.33
HDAC9-220ENST00000461409 ASXL1Q8IXJ9 1541 aa12.98□□□□□ -0.33
HDAC9-220ENST00000461409 MST1RQ04912 1400 aa12.97□□□□□ -0.33
HDAC9-220ENST00000461409 PTCH1Q13635 1447 aa12.97□□□□□ -0.33
HDAC9-220ENST00000461409 ACIN1Q9UKV3 1341 aaKnown RBP12.97□□□□□ -0.33
HDAC9-220ENST00000461409 MEX3CQ5U5Q3 659 aaKnown RBP12.97□□□□□ -0.33
HDAC9-220ENST00000461409 POTEAQ6S8J7 498 aa12.97□□□□□ -0.33
HDAC9-220ENST00000461409 CCDC144AA2RUR9 1427 aa12.96□□□□□ -0.33
HDAC9-220ENST00000461409 OTUD5Q96G74 571 aa12.96□□□□□ -0.33
HDAC9-220ENST00000461409 PRAG1Q86YV5 1406 aa12.96□□□□□ -0.34
HDAC9-220ENST00000461409 SHPRHQ149N8 1683 aa12.95□□□□□ -0.34
HDAC9-220ENST00000461409 POTEB2H3BUK9 544 aa12.94□□□□□ -0.34
HDAC9-220ENST00000461409 LRP6O75581 1613 aa12.94□□□□□ -0.34
HDAC9-220ENST00000461409 SETD5Q9C0A6 1442 aa12.94□□□□□ -0.34
HDAC9-220ENST00000461409 MAP3K13O43283 966 aa12.93□□□□□ -0.34
HDAC9-220ENST00000461409 ZNF772Q68DY9 489 aaPredicted RBP12.93□□□□□ -0.34
HDAC9-220ENST00000461409 LRRC59Q96AG4 307 aaKnown RBP12.93□□□□□ -0.34
HDAC9-220ENST00000461409 MPHOSPH9Q99550 1183 aa12.93□□□□□ -0.34
HDAC9-220ENST00000461409 NALCNQ8IZF0 1738 aa12.93□□□□□ -0.34
HDAC9-220ENST00000461409 ANKRD30BQ9BXX2 1392 aa12.93□□□□□ -0.34
HDAC9-220ENST00000461409 ROBO2Q9HCK4 1378 aa12.93□□□□□ -0.34
HDAC9-220ENST00000461409 PPLO60437 1756 aa12.92□□□□□ -0.34
HDAC9-220ENST00000461409 SETD1AO15047 1707 aaKnown RBP12.92□□□□□ -0.34
HDAC9-220ENST00000461409 PELP1Q8IZL8 1130 aaKnown RBP12.92□□□□□ -0.34
HDAC9-220ENST00000461409 PLSCR2Q9NRY7 297 aa12.92□□□□□ -0.34
HDAC9-220ENST00000461409 C1orf167Q5SNV9 1468 aa12.91□□□□□ -0.34
HDAC9-220ENST00000461409 SPATA31E1Q6ZUB1 1445 aa12.91□□□□□ -0.34
HDAC9-220ENST00000461409 DCAF8Q5TAQ9 597 aa12.91□□□□□ -0.34
HDAC9-220ENST00000461409 ASTLQ6HA08 431 aaPredicted RBP12.91□□□□□ -0.34
HDAC9-220ENST00000461409 NHSL1Q5SYE7 1610 aa12.91□□□□□ -0.34
HDAC9-220ENST00000461409 SLC39A7Q92504 469 aa12.9□□□□□ -0.34
HDAC9-220ENST00000461409 SPOCK2Q92563 424 aa12.9□□□□□ -0.34
HDAC9-220ENST00000461409 METRNQ9UJH8 293 aa12.9□□□□□ -0.34
HDAC9-220ENST00000461409 NUTM2BA6NNL0 878 aaPredicted RBP12.89□□□□□ -0.35
HDAC9-220ENST00000461409 NUTM2EB1AL46 878 aaPredicted RBP12.89□□□□□ -0.35
HDAC9-220ENST00000461409 RGL3Q3MIN7 710 aa12.89□□□□□ -0.35
HDAC9-220ENST00000461409 NUTM2AQ8IVF1 878 aaPredicted RBP12.89□□□□□ -0.35
HDAC9-220ENST00000461409 ADGRF5Q8IZF2 1346 aa12.88□□□□□ -0.35
HDAC9-220ENST00000461409 ATMINO43313 823 aaPredicted RBP12.88□□□□□ -0.35
HDAC9-220ENST00000461409 C7P10643 843 aa12.88□□□□□ -0.35
HDAC9-220ENST00000461409 PNPLA6Q8IY17 1366 aa12.87□□□□□ -0.35
HDAC9-220ENST00000461409 SGIP1Q9BQI5 828 aa12.87□□□□□ -0.35
HDAC9-220ENST00000461409 LRPPRCP42704 1394 aaKnown RBP12.86□□□□□ -0.35
HDAC9-220ENST00000461409 GSE1Q14687 1217 aa12.86□□□□□ -0.35
HDAC9-220ENST00000461409 DDX17Q92841 729 aaKnown RBP12.86□□□□□ -0.35
HDAC9-220ENST00000461409 LAMC1P11047 1609 aa12.86□□□□□ -0.35
HDAC9-220ENST00000461409 TECPR2O15040 1411 aa12.86□□□□□ -0.35
HDAC9-220ENST00000461409 PIK3C2GO75747 1445 aa12.86□□□□□ -0.35
HDAC9-220ENST00000461409 CDC42BPGQ6DT37 1551 aa12.86□□□□□ -0.35
HDAC9-220ENST00000461409 ABCC11Q96J66 1382 aa12.85□□□□□ -0.35
HDAC9-220ENST00000461409 AFF2P51816 1311 aa12.85□□□□□ -0.35
HDAC9-220ENST00000461409 SOS2Q07890 1332 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms