RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	ZNF521	Q96K83	1311 aa		11.97	□□□□□ -0.49
SYNE1-215	ENST00000460912	TMEM2	Q9UHN6	1383 aa		11.97	□□□□□ -0.49
SYNE1-215	ENST00000460912	MSH5	O43196	834 aa		11.97	□□□□□ -0.49
SYNE1-215	ENST00000460912	RIMS2	Q9UQ26	1411 aa		11.97	□□□□□ -0.49
SYNE1-215	ENST00000460912	PLEKHG1	Q9ULL1	1385 aa		11.96	□□□□□ -0.49
SYNE1-215	ENST00000460912	BCAN	Q96GW7	911 aa		11.96	□□□□□ -0.5
SYNE1-215	ENST00000460912	ADGRF5	Q8IZF2	1346 aa		11.95	□□□□□ -0.5
SYNE1-215	ENST00000460912	KDM4F	A0A1W2PPD8	638 aa		11.95	□□□□□ -0.5
SYNE1-215	ENST00000460912	FAM9B	Q8IZU0	186 aa		11.95	□□□□□ -0.5
SYNE1-215	ENST00000460912	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.94	□□□□□ -0.5
SYNE1-215	ENST00000460912	PTPRU	Q92729	1446 aa		11.94	□□□□□ -0.5
SYNE1-215	ENST00000460912	C14orf93	Q9H972	538 aa	Known RBP	11.93	□□□□□ -0.5
SYNE1-215	ENST00000460912	IQSEC2	Q5JU85	1478 aa		11.93	□□□□□ -0.5
SYNE1-215	ENST00000460912	RGPD8	O14715	1765 aa	Predicted RBP	11.92	□□□□□ -0.5
SYNE1-215	ENST00000460912	NLRP13	Q86W25	1043 aa		11.92	□□□□□ -0.5
SYNE1-215	ENST00000460912	ITSN1	Q15811	1721 aa		11.92	□□□□□ -0.5
SYNE1-215	ENST00000460912	CRYBG1	Q9Y4K1	1723 aa		11.91	□□□□□ -0.5
SYNE1-215	ENST00000460912	PTCH1	Q13635	1447 aa		11.91	□□□□□ -0.5
SYNE1-215	ENST00000460912	KDM2A	Q9Y2K7	1162 aa		11.9	□□□□□ -0.5
SYNE1-215	ENST00000460912	KIF20B	Q96Q89	1820 aa		11.9	□□□□□ -0.5
SYNE1-215	ENST00000460912	NEFL	P07196	543 aa		11.9	□□□□□ -0.51
SYNE1-215	ENST00000460912	FAM135B	Q49AJ0	1406 aa		11.89	□□□□□ -0.51
SYNE1-215	ENST00000460912	TRMT2A	Q8IZ69	625 aa	Known RBP	11.89	□□□□□ -0.51
SYNE1-215	ENST00000460912	CD163L1	Q9NR16	1453 aa		11.88	□□□□□ -0.51
SYNE1-215	ENST00000460912	CDC42BPG	Q6DT37	1551 aa		11.88	□□□□□ -0.51
SYNE1-215	ENST00000460912	ANP32E	Q9BTT0	268 aa		11.88	□□□□□ -0.51
SYNE1-215	ENST00000460912	ZNF326	Q5BKZ1	582 aa	Known RBP	11.87	□□□□□ -0.51
SYNE1-215	ENST00000460912	YTHDC2	Q9H6S0	1430 aa	Known RBP	11.87	□□□□□ -0.51
SYNE1-215	ENST00000460912	IRX6	P78412	446 aa	Predicted RBP	11.87	□□□□□ -0.51
SYNE1-215	ENST00000460912	PLEKHH1	Q9ULM0	1364 aa		11.86	□□□□□ -0.51
SYNE1-215	ENST00000460912	PDE3B	Q13370	1112 aa		11.86	□□□□□ -0.51
SYNE1-215	ENST00000460912	PANK3	Q9H999	370 aa		11.86	□□□□□ -0.51
SYNE1-215	ENST00000460912	TRPM3	Q9HCF6	1732 aa	Predicted RBP	11.86	□□□□□ -0.51
SYNE1-215	ENST00000460912	MET	P08581	1390 aa		11.85	□□□□□ -0.51
SYNE1-215	ENST00000460912	ABCC11	Q96J66	1382 aa		11.85	□□□□□ -0.51
SYNE1-215	ENST00000460912	PIK3R4	Q99570	1358 aa		11.85	□□□□□ -0.51
SYNE1-215	ENST00000460912	SIRT1	Q96EB6	747 aa		11.85	□□□□□ -0.51
SYNE1-215	ENST00000460912	LTK	P29376	864 aa		11.83	□□□□□ -0.51
SYNE1-215	ENST00000460912	CEBPA	P49715	358 aa	Predicted RBP	11.83	□□□□□ -0.51
SYNE1-215	ENST00000460912	COL3A1	P02461	1466 aa	Predicted RBP	11.83	□□□□□ -0.52
SYNE1-215	ENST00000460912	TMF1	P82094	1093 aa		11.83	□□□□□ -0.52
SYNE1-215	ENST00000460912	RGL3	Q3MIN7	710 aa		11.83	□□□□□ -0.52
SYNE1-215	ENST00000460912	LRRC7	Q96NW7	1537 aa		11.83	□□□□□ -0.52
SYNE1-215	ENST00000460912	RRP1	P56182	461 aa	Known RBP	11.82	□□□□□ -0.52
SYNE1-215	ENST00000460912	PPP2R1A	P30153	589 aa		11.82	□□□□□ -0.52
SYNE1-215	ENST00000460912	CARD14	Q9BXL6	1004 aa		11.81	□□□□□ -0.52
SYNE1-215	ENST00000460912	PHRF1	Q9P1Y6	1649 aa	Known RBP	11.81	□□□□□ -0.52
SYNE1-215	ENST00000460912	NKTR	P30414	1462 aa	Known RBP	11.81	□□□□□ -0.52
SYNE1-215	ENST00000460912	EIF3A	Q14152	1382 aa	Known RBP	11.81	□□□□□ -0.52
SYNE1-215	ENST00000460912	TMC1	Q8TDI8	760 aa		11.81	□□□□□ -0.52
SYNE1-215	ENST00000460912	B4GALNT3	Q6L9W6	998 aa		11.8	□□□□□ -0.52
SYNE1-215	ENST00000460912	LTBP4	Q8N2S1	1624 aa		11.8	□□□□□ -0.52
SYNE1-215	ENST00000460912	POLR3A	O14802	1390 aa	Predicted RBP	11.79	□□□□□ -0.52
SYNE1-215	ENST00000460912	ERICH6	Q7L0X2	663 aa		11.79	□□□□□ -0.52
SYNE1-215	ENST00000460912	PHF23	Q9BUL5	403 aa	Predicted RBP	11.79	□□□□□ -0.52
SYNE1-215	ENST00000460912	MYT1L	Q9UL68	1186 aa		11.79	□□□□□ -0.52
SYNE1-215	ENST00000460912	ALS2	Q96Q42	1657 aa		11.78	□□□□□ -0.52
SYNE1-215	ENST00000460912	ATP7B	P35670	1465 aa		11.78	□□□□□ -0.52
SYNE1-215	ENST00000460912	PUS7	Q96PZ0	661 aa	Known RBP	11.78	□□□□□ -0.52
SYNE1-215	ENST00000460912	KDM2B	Q8NHM5	1336 aa		11.78	□□□□□ -0.52
SYNE1-215	ENST00000460912	CFAP70	Q5T0N1	1121 aa		11.78	□□□□□ -0.52
SYNE1-215	ENST00000460912	VGF	O15240	615 aa	Predicted RBP	11.78	□□□□□ -0.52
SYNE1-215	ENST00000460912	NPHP4	O75161	1426 aa	Predicted RBP	11.77	□□□□□ -0.52
SYNE1-215	ENST00000460912	MLEC	Q14165	292 aa		11.77	□□□□□ -0.53
SYNE1-215	ENST00000460912	DUSP27	Q5VZP5	1158 aa		11.77	□□□□□ -0.53
SYNE1-215	ENST00000460912	CDCA7L	Q96GN5	454 aa		11.77	□□□□□ -0.53
SYNE1-215	ENST00000460912	ABCA3	Q99758	1704 aa		11.77	□□□□□ -0.53
SYNE1-215	ENST00000460912	MST1R	Q04912	1400 aa		11.77	□□□□□ -0.53
SYNE1-215	ENST00000460912	KIF1A	Q12756	1690 aa		11.77	□□□□□ -0.53
SYNE1-215	ENST00000460912	ROBO2	Q9HCK4	1378 aa		11.76	□□□□□ -0.53
SYNE1-215	ENST00000460912	PIK3C2A	O00443	1686 aa		11.76	□□□□□ -0.53
SYNE1-215	ENST00000460912	NHSL1	Q5SYE7	1610 aa		11.76	□□□□□ -0.53
SYNE1-215	ENST00000460912	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.75	□□□□□ -0.53
SYNE1-215	ENST00000460912	ADAMTS8	Q9UP79	889 aa		11.75	□□□□□ -0.53
SYNE1-215	ENST00000460912	SSH2	Q76I76	1423 aa		11.75	□□□□□ -0.53
SYNE1-215	ENST00000460912	NCOA3	Q9Y6Q9	1424 aa		11.74	□□□□□ -0.53
SYNE1-215	ENST00000460912	RCAN3	Q9UKA8	241 aa		11.74	□□□□□ -0.53
SYNE1-215	ENST00000460912	TBX22	Q9Y458	520 aa		11.73	□□□□□ -0.53
SYNE1-215	ENST00000460912	RGPD1	P0DJD0	1748 aa		11.73	□□□□□ -0.53
SYNE1-215	ENST00000460912	CPSF1	Q10570	1443 aa	Known RBP	11.73	□□□□□ -0.53
SYNE1-215	ENST00000460912	NCBP3	Q53F19	620 aa	Known RBP	11.73	□□□□□ -0.53
SYNE1-215	ENST00000460912	CC2D1B	Q5T0F9	858 aa	Known RBP	11.72	□□□□□ -0.53
SYNE1-215	ENST00000460912	CAMTA1	Q9Y6Y1	1673 aa		11.71	□□□□□ -0.53
SYNE1-215	ENST00000460912	EXOC6	Q8TAG9	804 aa		11.71	□□□□□ -0.53
SYNE1-215	ENST00000460912	CDCA8	Q53HL2	280 aa		11.71	□□□□□ -0.54
SYNE1-215	ENST00000460912	SLFN5	Q08AF3	891 aa		11.7	□□□□□ -0.54
SYNE1-215	ENST00000460912	SLC24A1	O60721	1099 aa		11.7	□□□□□ -0.54
SYNE1-215	ENST00000460912	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.7	□□□□□ -0.54
SYNE1-215	ENST00000460912	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.69	□□□□□ -0.54
SYNE1-215	ENST00000460912	ANKAR	Q7Z5J8	1434 aa		11.68	□□□□□ -0.54
SYNE1-215	ENST00000460912	PEAK1	Q9H792	1746 aa		11.68	□□□□□ -0.54
SYNE1-215	ENST00000460912	NSD2	O96028	1365 aa		11.68	□□□□□ -0.54
SYNE1-215	ENST00000460912	DCC	P43146	1447 aa		11.68	□□□□□ -0.54
SYNE1-215	ENST00000460912	ANKRD36B	Q8N2N9	1353 aa		11.68	□□□□□ -0.54
SYNE1-215	ENST00000460912	NSD3	Q9BZ95	1437 aa		11.67	□□□□□ -0.54
SYNE1-215	ENST00000460912	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.67	□□□□□ -0.54
SYNE1-215	ENST00000460912	MED1	Q15648	1581 aa	Predicted RBP	11.67	□□□□□ -0.54
SYNE1-215	ENST00000460912	NINL	Q9Y2I6	1382 aa		11.67	□□□□□ -0.54
SYNE1-215	ENST00000460912	DMRT2	Q9Y5R5	561 aa		11.67	□□□□□ -0.54
SYNE1-215	ENST00000460912	ADGRL3	Q9HAR2	1447 aa		11.67	□□□□□ -0.54

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