RNA–Protein interactions for RNA: ENST00000460601.5

NELFCD-201, Transcript of negative elongation factor complex member C/D, humanhuman

TSL 1 (best)

Gene NELFCD, Length 2,137 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFCD-201ENST00000460601 AMOTL2Q9Y2J4 779 aa23.16■■□□□ 1.3
NELFCD-201ENST00000460601 PER1O15534 1290 aaPredicted RBP23.15■■□□□ 1.3
NELFCD-201ENST00000460601 DIP2AQ14689 1571 aa23.15■■□□□ 1.3
NELFCD-201ENST00000460601 PRKRIP1Q9H875 184 aaPredicted RBP23.15■■□□□ 1.3
NELFCD-201ENST00000460601 SRPK2P78362 688 aaKnown RBP23.14■■□□□ 1.29
NELFCD-201ENST00000460601 TMC1Q8TDI8 760 aa23.12■■□□□ 1.29
NELFCD-201ENST00000460601 SLC12A5Q9H2X9 1139 aa23.12■■□□□ 1.29
NELFCD-201ENST00000460601 NPHP4O75161 1426 aaPredicted RBP23.12■■□□□ 1.29
NELFCD-201ENST00000460601 FAM135BQ49AJ0 1406 aa23.12■■□□□ 1.29
NELFCD-201ENST00000460601 KCNA6P17658 529 aa23.1■■□□□ 1.29
NELFCD-201ENST00000460601 YTHDC1Q96MU7 727 aaKnown RBP23.1■■□□□ 1.29
NELFCD-201ENST00000460601 CDK19Q9BWU1 502 aa23.1■■□□□ 1.29
NELFCD-201ENST00000460601 LMTK3Q96Q04 1460 aa23.1■■□□□ 1.29
NELFCD-201ENST00000460601 XRN1Q8IZH2 1706 aaKnown RBP23.08■■□□□ 1.29
NELFCD-201ENST00000460601 SIRT1Q96EB6 747 aa23.08■■□□□ 1.28
NELFCD-201ENST00000460601 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.07■■□□□ 1.28
NELFCD-201ENST00000460601 CCDC184Q52MB2 194 aa23.07■■□□□ 1.28
NELFCD-201ENST00000460601 CC2D1BQ5T0F9 858 aaKnown RBP23.07■■□□□ 1.28
NELFCD-201ENST00000460601 CARD14Q9BXL6 1004 aa23.06■■□□□ 1.28
NELFCD-201ENST00000460601 PTCH1Q13635 1447 aa23.05■■□□□ 1.28
NELFCD-201ENST00000460601 RBM33Q96EV2 1170 aaKnown RBP23.05■■□□□ 1.28
NELFCD-201ENST00000460601 WASLO00401 505 aaPredicted RBP23.03■■□□□ 1.28
NELFCD-201ENST00000460601 PIK3R4Q99570 1358 aa23.03■■□□□ 1.28
NELFCD-201ENST00000460601 CCER2I3L3R5 266 aa23.03■■□□□ 1.28
NELFCD-201ENST00000460601 KNSTRNQ9Y448 316 aa23.03■■□□□ 1.28
NELFCD-201ENST00000460601 CHD2O14647 1828 aaKnown RBP23.03■■□□□ 1.28
NELFCD-201ENST00000460601 PUS7Q96PZ0 661 aaKnown RBP23.02■■□□□ 1.28
NELFCD-201ENST00000460601 ATAD2Q6PL18 1390 aa23.01■■□□□ 1.27
NELFCD-201ENST00000460601 NUTM2FA1L443 756 aa23■■□□□ 1.27
NELFCD-201ENST00000460601 AMER1Q5JTC6 1135 aaPredicted RBP23■■□□□ 1.27
NELFCD-201ENST00000460601 KTN1Q86UP2 1357 aaKnown RBP22.99■■□□□ 1.27
NELFCD-201ENST00000460601 CABP1Q9NZU7 370 aa22.99■■□□□ 1.27
NELFCD-201ENST00000460601 NSD3Q9BZ95 1437 aa22.98■■□□□ 1.27
NELFCD-201ENST00000460601 A0A1W2PP64 1363 aa22.97■■□□□ 1.27
NELFCD-201ENST00000460601 ADGRB2O60241 1585 aa22.97■■□□□ 1.27
NELFCD-201ENST00000460601 PRR36Q9H6K5 1346 aa22.97■■□□□ 1.27
NELFCD-201ENST00000460601 PARD3Q8TEW0 1356 aa22.97■■□□□ 1.27
NELFCD-201ENST00000460601 CD163L1Q9NR16 1453 aa22.97■■□□□ 1.27
NELFCD-201ENST00000460601 ANKRD36BQ8N2N9 1353 aa22.96■■□□□ 1.27
NELFCD-201ENST00000460601 NUDT16Q96DE0 195 aaKnown RBP22.94■■□□□ 1.26
NELFCD-201ENST00000460601 STRCQ7RTU9 1775 aa22.94■■□□□ 1.26
NELFCD-201ENST00000460601 ATP7BP35670 1465 aa22.94■■□□□ 1.26
NELFCD-201ENST00000460601 MRS2Q9HD23 443 aa22.93■■□□□ 1.26
NELFCD-201ENST00000460601 PPIP5K1Q6PFW1 1433 aa22.93■■□□□ 1.26
NELFCD-201ENST00000460601 RALBP1Q15311 655 aa22.93■■□□□ 1.26
NELFCD-201ENST00000460601 NINLQ9Y2I6 1382 aa22.92■■□□□ 1.26
NELFCD-201ENST00000460601 NALCNQ8IZF0 1738 aa22.91■■□□□ 1.26
NELFCD-201ENST00000460601 MYBBP1AQ9BQG0 1328 aaKnown RBP22.9■■□□□ 1.26
NELFCD-201ENST00000460601 NWD1Q149M9 1564 aa22.89■■□□□ 1.26
NELFCD-201ENST00000460601 CCDC61Q9Y6R9 512 aa22.89■■□□□ 1.25
NELFCD-201ENST00000460601 USP32Q8NFA0 1604 aa22.88■■□□□ 1.25
NELFCD-201ENST00000460601 TERF2IPQ9NYB0 399 aa22.88■■□□□ 1.25
NELFCD-201ENST00000460601 STRCP1A6NGW2 1772 aa22.87■■□□□ 1.25
NELFCD-201ENST00000460601 NPC1L1Q9UHC9 1359 aa22.86■■□□□ 1.25
NELFCD-201ENST00000460601 HDGFL2Q7Z4V5 671 aaPredicted RBP22.85■■□□□ 1.25
NELFCD-201ENST00000460601 RGPD8O14715 1765 aaPredicted RBP22.85■■□□□ 1.25
NELFCD-201ENST00000460601 NKTRP30414 1462 aaKnown RBP22.85■■□□□ 1.25
NELFCD-201ENST00000460601 FAM9BQ8IZU0 186 aa22.84■■□□□ 1.25
NELFCD-201ENST00000460601 CGNL1Q0VF96 1302 aa22.84■■□□□ 1.25
NELFCD-201ENST00000460601 TOPAZ1Q8N9V7 1692 aa22.84■■□□□ 1.25
NELFCD-201ENST00000460601 CPSF1Q10570 1443 aaKnown RBP22.83■■□□□ 1.25
NELFCD-201ENST00000460601 TNNT2P45379 298 aaPredicted RBP22.83■■□□□ 1.25
NELFCD-201ENST00000460601 C14orf37Q86TY3 774 aa22.83■■□□□ 1.25
NELFCD-201ENST00000460601 PROSER2Q86WR7 435 aaPredicted RBP22.83■■□□□ 1.25
NELFCD-201ENST00000460601 CDC42BPGQ6DT37 1551 aa22.82■■□□□ 1.24
NELFCD-201ENST00000460601 ADGRL3Q9HAR2 1447 aa22.82■■□□□ 1.24
NELFCD-201ENST00000460601 NLRP13Q86W25 1043 aa22.82■■□□□ 1.24
NELFCD-201ENST00000460601 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.82■■□□□ 1.24
NELFCD-201ENST00000460601 PPP2R1AP30153 589 aa22.81■■□□□ 1.24
NELFCD-201ENST00000460601 PMFBP1Q8TBY8 1022 aa22.81■■□□□ 1.24
NELFCD-201ENST00000460601 GGNBP2Q9H3C7 697 aa22.81■■□□□ 1.24
NELFCD-201ENST00000460601 PELP1Q8IZL8 1130 aaKnown RBP22.8■■□□□ 1.24
NELFCD-201ENST00000460601 FMN2Q9NZ56 1722 aa22.8■■□□□ 1.24
NELFCD-201ENST00000460601 BRD4O60885 1362 aaPredicted RBP22.79■■□□□ 1.24
NELFCD-201ENST00000460601 ACEP12821 1306 aa22.79■■□□□ 1.24
NELFCD-201ENST00000460601 FYB1O15117 783 aa22.79■■□□□ 1.24
NELFCD-201ENST00000460601 ZNF335Q9H4Z2 1342 aaPredicted RBP22.78■■□□□ 1.24
NELFCD-201ENST00000460601 MORC1Q86VD1 984 aa22.78■■□□□ 1.24
NELFCD-201ENST00000460601 ITSN1Q15811 1721 aa22.77■■□□□ 1.24
NELFCD-201ENST00000460601 TMEM94Q12767 1356 aa22.77■■□□□ 1.24
NELFCD-201ENST00000460601 AKAP12Q02952 1782 aa22.76■■□□□ 1.23
NELFCD-201ENST00000460601 PLEKHG3A1L390 1219 aa22.75■■□□□ 1.23
NELFCD-201ENST00000460601 MON2Q7Z3U7 1717 aa22.75■■□□□ 1.23
NELFCD-201ENST00000460601 PNISRQ8TF01 805 aaKnown RBP22.75■■□□□ 1.23
NELFCD-201ENST00000460601 EDC4Q6P2E9 1401 aaKnown RBP22.74■■□□□ 1.23
NELFCD-201ENST00000460601 ANKARQ7Z5J8 1434 aa22.74■■□□□ 1.23
NELFCD-201ENST00000460601 NME9Q86XW9 330 aa22.73■■□□□ 1.23
NELFCD-201ENST00000460601 ZRANB1Q9UGI0 708 aa22.73■■□□□ 1.23
NELFCD-201ENST00000460601 NSD2O96028 1365 aa22.72■■□□□ 1.23
NELFCD-201ENST00000460601 KIF20BQ96Q89 1820 aa22.72■■□□□ 1.23
NELFCD-201ENST00000460601 SENP3-EIF4A1A0A087X0R7 540 aa22.71■■□□□ 1.23
NELFCD-201ENST00000460601 NGDNQ8NEJ9 315 aaKnown RBP22.71■■□□□ 1.23
NELFCD-201ENST00000460601 ZNF692Q9BU19 519 aaPredicted RBP22.7■■□□□ 1.23
NELFCD-201ENST00000460601 USP6P35125 1406 aa22.7■■□□□ 1.22
NELFCD-201ENST00000460601 FBLN1P23142 703 aa22.7■■□□□ 1.22
NELFCD-201ENST00000460601 NRKQ7Z2Y5 1582 aa22.7■■□□□ 1.22
NELFCD-201ENST00000460601 C19orf44Q9H6X5 657 aa22.69■■□□□ 1.22
NELFCD-201ENST00000460601 POLR3AO14802 1390 aaPredicted RBP22.69■■□□□ 1.22
NELFCD-201ENST00000460601 ESCO1Q5FWF5 840 aa22.69■■□□□ 1.22
NELFCD-201ENST00000460601 HNRNPUQ00839 825 aaKnown RBP eCLIP22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms