RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 METP08581 1390 aa25.85■■□□□ 1.73
SF3B4-202ENST00000457312 DAPK1P53355 1430 aa25.85■■□□□ 1.73
SF3B4-202ENST00000457312 SENP3-EIF4A1A0A087X0R7 540 aa25.84■■□□□ 1.73
SF3B4-202ENST00000457312 PXDNQ92626 1479 aa25.84■■□□□ 1.73
SF3B4-202ENST00000457312 TNS1Q9HBL0 1735 aaKnown RBP25.83■■□□□ 1.72
SF3B4-202ENST00000457312 IQGAP3Q86VI3 1631 aa25.82■■□□□ 1.72
SF3B4-202ENST00000457312 KRT27Q7Z3Y8 459 aa25.81■■□□□ 1.72
SF3B4-202ENST00000457312 USP32Q8NFA0 1604 aa25.81■■□□□ 1.72
SF3B4-202ENST00000457312 E9PCH4 1651 aa25.8■■□□□ 1.72
SF3B4-202ENST00000457312 EN1Q05925 392 aaPredicted RBP25.79■■□□□ 1.72
SF3B4-202ENST00000457312 PLCH1Q4KWH8 1693 aa25.78■■□□□ 1.72
SF3B4-202ENST00000457312 ANKRD30AQ9BXX3 1397 aa25.78■■□□□ 1.72
SF3B4-202ENST00000457312 DISP2A7MBM2 1401 aa25.78■■□□□ 1.72
SF3B4-202ENST00000457312 CAMTA1Q9Y6Y1 1673 aa25.77■■□□□ 1.72
SF3B4-202ENST00000457312 NWD2Q9ULI1 1742 aa25.76■■□□□ 1.71
SF3B4-202ENST00000457312 ONECUT3O60422 494 aaPredicted RBP25.74■■□□□ 1.71
SF3B4-202ENST00000457312 ADGRL2O95490 1459 aa25.73■■□□□ 1.71
SF3B4-202ENST00000457312 NPHP3Q7Z494 1330 aa25.72■■□□□ 1.71
SF3B4-202ENST00000457312 VPS72Q15906 364 aa25.71■■□□□ 1.71
SF3B4-202ENST00000457312 ZNF784Q8NCA9 323 aaPredicted RBP25.71■■□□□ 1.71
SF3B4-202ENST00000457312 CHIC2Q9UKJ5 165 aa25.68■■□□□ 1.7
SF3B4-202ENST00000457312 NINLQ9Y2I6 1382 aa25.68■■□□□ 1.7
SF3B4-202ENST00000457312 ADGRB2O60241 1585 aa25.66■■□□□ 1.7
SF3B4-202ENST00000457312 XPCQ01831 940 aaPredicted RBP25.66■■□□□ 1.7
SF3B4-202ENST00000457312 RREB1Q92766 1687 aa25.65■■□□□ 1.7
SF3B4-202ENST00000457312 NUP188Q5SRE5 1749 aa25.63■■□□□ 1.69
SF3B4-202ENST00000457312 DCAF8L1A6NGE4 600 aa25.63■■□□□ 1.69
SF3B4-202ENST00000457312 C1QTNF8P60827 252 aa25.63■■□□□ 1.69
SF3B4-202ENST00000457312 EZH2Q15910 746 aaKnown RBP25.63■■□□□ 1.69
SF3B4-202ENST00000457312 KANK4Q5T7N3 995 aaPredicted RBP25.63■■□□□ 1.69
SF3B4-202ENST00000457312 ROBO2Q9HCK4 1378 aa25.63■■□□□ 1.69
SF3B4-202ENST00000457312 CDC42BPGQ6DT37 1551 aa25.63■■□□□ 1.69
SF3B4-202ENST00000457312 UTRNP46939 3433 aa25.63■■□□□ 1.69
SF3B4-202ENST00000457312 ABCA3Q99758 1704 aa25.63■■□□□ 1.69
SF3B4-202ENST00000457312 NRAPQ86VF7 1730 aa25.61■■□□□ 1.69
SF3B4-202ENST00000457312 ANKRD50Q9ULJ7 1429 aa25.61■■□□□ 1.69
SF3B4-202ENST00000457312 CEP350Q5VT06 3117 aa25.61■■□□□ 1.69
SF3B4-202ENST00000457312 CCDC9Q9Y3X0 531 aaKnown RBP25.6■■□□□ 1.69
SF3B4-202ENST00000457312 PRAG1Q86YV5 1406 aa25.6■■□□□ 1.69
SF3B4-202ENST00000457312 A0A0G2JS52 829 aa25.58■■□□□ 1.69
SF3B4-202ENST00000457312 MYT1Q01538 1121 aa25.58■■□□□ 1.69
SF3B4-202ENST00000457312 FOXO3O43524 673 aa25.57■■□□□ 1.68
SF3B4-202ENST00000457312 ESCO1Q5FWF5 840 aa25.57■■□□□ 1.68
SF3B4-202ENST00000457312 CHD4Q14839 1912 aa25.57■■□□□ 1.68
SF3B4-202ENST00000457312 CAMKK2Q96RR4 588 aa25.56■■□□□ 1.68
SF3B4-202ENST00000457312 PPP1R1BQ9UD71 204 aaPredicted RBP25.56■■□□□ 1.68
SF3B4-202ENST00000457312 NEXMIFQ5QGS0 1516 aa25.56■■□□□ 1.68
SF3B4-202ENST00000457312 FAM182BQ5T319 152 aa25.55■■□□□ 1.68
SF3B4-202ENST00000457312 THSD7AQ9UPZ6 1657 aa25.54■■□□□ 1.68
SF3B4-202ENST00000457312 SPATA31A3Q5VYP0 1347 aa25.53■■□□□ 1.68
SF3B4-202ENST00000457312 LRPPRCP42704 1394 aaKnown RBP25.53■■□□□ 1.68
SF3B4-202ENST00000457312 FAM98CQ17RN3 349 aaKnown RBP25.52■■□□□ 1.68
SF3B4-202ENST00000457312 PARD3Q8TEW0 1356 aa25.52■■□□□ 1.68
SF3B4-202ENST00000457312 HFM1A2PYH4 1435 aa25.51■■□□□ 1.67
SF3B4-202ENST00000457312 SPON1Q9HCB6 807 aa25.5■■□□□ 1.67
SF3B4-202ENST00000457312 KIF1AQ12756 1690 aa25.49■■□□□ 1.67
SF3B4-202ENST00000457312 VPS8Q8N3P4 1428 aa25.48■■□□□ 1.67
SF3B4-202ENST00000457312 CCDC144AA2RUR9 1427 aa25.46■■□□□ 1.67
SF3B4-202ENST00000457312 KCNQ2O43526 872 aa25.45■■□□□ 1.66
SF3B4-202ENST00000457312 ZNF326Q5BKZ1 582 aaKnown RBP25.45■■□□□ 1.66
SF3B4-202ENST00000457312 NRKQ7Z2Y5 1582 aa25.44■■□□□ 1.66
SF3B4-202ENST00000457312 TNS3Q68CZ2 1445 aa25.44■■□□□ 1.66
SF3B4-202ENST00000457312 HAP1P54257 671 aaPredicted RBP25.43■■□□□ 1.66
SF3B4-202ENST00000457312 CABLES1Q8TDN4 633 aa25.42■■□□□ 1.66
SF3B4-202ENST00000457312 TRIM37O94972 964 aa25.4■■□□□ 1.66
SF3B4-202ENST00000457312 MYOM1P52179 1685 aa25.39■■□□□ 1.66
SF3B4-202ENST00000457312 NAIPQ13075 1403 aa25.39■■□□□ 1.66
SF3B4-202ENST00000457312 FMN2Q9NZ56 1722 aa25.39■■□□□ 1.65
SF3B4-202ENST00000457312 CASZ1Q86V15 1759 aa25.39■■□□□ 1.65
SF3B4-202ENST00000457312 FAM83GA6ND36 823 aa25.37■■□□□ 1.65
SF3B4-202ENST00000457312 CLTCL1P53675 1640 aa25.37■■□□□ 1.65
SF3B4-202ENST00000457312 APBA3O96018 575 aa25.36■■□□□ 1.65
SF3B4-202ENST00000457312 NBPF8Q3BBV2 869 aa25.36■■□□□ 1.65
SF3B4-202ENST00000457312 NBPF14Q5TI25 921 aa25.36■■□□□ 1.65
SF3B4-202ENST00000457312 COL14A1Q05707 1796 aaKnown RBP25.36■■□□□ 1.65
SF3B4-202ENST00000457312 NUTM2FA1L443 756 aa25.34■■□□□ 1.65
SF3B4-202ENST00000457312 PLEKHG5O94827 1062 aa25.33■■□□□ 1.65
SF3B4-202ENST00000457312 SPATA31A5Q5VU36 1347 aa25.33■■□□□ 1.64
SF3B4-202ENST00000457312 SPATA31A7Q8IWB4 1347 aa25.33■■□□□ 1.64
SF3B4-202ENST00000457312 KRT28Q7Z3Y7 464 aa25.32■■□□□ 1.64
SF3B4-202ENST00000457312 KIF1BO60333 1816 aa25.32■■□□□ 1.64
SF3B4-202ENST00000457312 RGPD8O14715 1765 aaPredicted RBP25.31■■□□□ 1.64
SF3B4-202ENST00000457312 FAM196AQ6ZSG2 479 aa25.3■■□□□ 1.64
SF3B4-202ENST00000457312 BTG4Q9NY30 223 aa25.3■■□□□ 1.64
SF3B4-202ENST00000457312 GIGYF1O75420 1035 aaPredicted RBP25.27■■□□□ 1.64
SF3B4-202ENST00000457312 RRBP1Q9P2E9 1410 aaKnown RBP25.27■■□□□ 1.64
SF3B4-202ENST00000457312 SBNO1A3KN83 1393 aa25.26■■□□□ 1.63
SF3B4-202ENST00000457312 ARHGEF10O15013 1369 aa25.26■■□□□ 1.63
SF3B4-202ENST00000457312 IFT172Q9UG01 1749 aa25.24■■□□□ 1.63
SF3B4-202ENST00000457312 NUP155O75694 1391 aa25.24■■□□□ 1.63
SF3B4-202ENST00000457312 RGPD3A6NKT7 1758 aaPredicted RBP25.23■■□□□ 1.63
SF3B4-202ENST00000457312 RGPD4Q7Z3J3 1758 aa25.23■■□□□ 1.63
SF3B4-202ENST00000457312 KNDC1Q76NI1 1749 aa25.2■■□□□ 1.63
SF3B4-202ENST00000457312 CRYBG1Q9Y4K1 1723 aa25.2■■□□□ 1.63
SF3B4-202ENST00000457312 PPLO60437 1756 aa25.2■■□□□ 1.62
SF3B4-202ENST00000457312 NRXN1Q9ULB1 1477 aa25.2■■□□□ 1.62
SF3B4-202ENST00000457312 TECPR2O15040 1411 aa25.2■■□□□ 1.62
SF3B4-202ENST00000457312 TRPM3Q9HCF6 1732 aaPredicted RBP25.19■■□□□ 1.62
SF3B4-202ENST00000457312 PSME1Q06323 249 aa25.18■■□□□ 1.62
SF3B4-202ENST00000457312 LMOD2Q6P5Q4 547 aa25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms