RNA–Protein interactions for RNA: ENST00000456957.2

PKNOX1-204, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 3

Gene PKNOX1, Length 569 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-204ENST00000456957 ST20-MTHFSA0A0A6YYL1 179 aa22.82■■□□□ 1.24
PKNOX1-204ENST00000456957 POGKQ9P215 609 aa22.82■■□□□ 1.24
PKNOX1-204ENST00000456957 SAFB2Q14151 953 aaKnown RBP eCLIP22.81■■□□□ 1.24
PKNOX1-204ENST00000456957 PROSER2Q86WR7 435 aaPredicted RBP22.81■■□□□ 1.24
PKNOX1-204ENST00000456957 RBM33Q96EV2 1170 aaKnown RBP22.8■■□□□ 1.24
PKNOX1-204ENST00000456957 TMEM94Q12767 1356 aa22.79■■□□□ 1.24
PKNOX1-204ENST00000456957 SBNO2Q9Y2G9 1366 aa22.78■■□□□ 1.24
PKNOX1-204ENST00000456957 ADGRL3Q9HAR2 1447 aa22.78■■□□□ 1.24
PKNOX1-204ENST00000456957 HIRIP3Q9BW71 556 aaPredicted RBP22.77■■□□□ 1.24
PKNOX1-204ENST00000456957 TULP4Q9NRJ4 1543 aa22.77■■□□□ 1.24
PKNOX1-204ENST00000456957 CDC42BPGQ6DT37 1551 aa22.76■■□□□ 1.23
PKNOX1-204ENST00000456957 NCOA3Q9Y6Q9 1424 aa22.76■■□□□ 1.23
PKNOX1-204ENST00000456957 TESK2Q96S53 571 aa22.76■■□□□ 1.23
PKNOX1-204ENST00000456957 MINK1Q8N4C8 1332 aaPredicted RBP22.76■■□□□ 1.23
PKNOX1-204ENST00000456957 FMN2Q9NZ56 1722 aa22.74■■□□□ 1.23
PKNOX1-204ENST00000456957 C14orf37Q86TY3 774 aa22.71■■□□□ 1.23
PKNOX1-204ENST00000456957 DISP3Q9P2K9 1392 aa22.71■■□□□ 1.23
PKNOX1-204ENST00000456957 IQSEC2Q5JU85 1478 aa22.7■■□□□ 1.22
PKNOX1-204ENST00000456957 RGPD8O14715 1765 aaPredicted RBP22.69■■□□□ 1.22
PKNOX1-204ENST00000456957 USP32Q8NFA0 1604 aa22.69■■□□□ 1.22
PKNOX1-204ENST00000456957 DCCP43146 1447 aa22.67■■□□□ 1.22
PKNOX1-204ENST00000456957 MSH6P52701 1360 aa22.67■■□□□ 1.22
PKNOX1-204ENST00000456957 TOPAZ1Q8N9V7 1692 aa22.66■■□□□ 1.22
PKNOX1-204ENST00000456957 C19orf44Q9H6X5 657 aa22.66■■□□□ 1.22
PKNOX1-204ENST00000456957 ITSN1Q15811 1721 aa22.65■■□□□ 1.22
PKNOX1-204ENST00000456957 EVC2Q86UK5 1308 aa22.65■■□□□ 1.22
PKNOX1-204ENST00000456957 WASLO00401 505 aaPredicted RBP22.65■■□□□ 1.22
PKNOX1-204ENST00000456957 TMF1P82094 1093 aa22.65■■□□□ 1.22
PKNOX1-204ENST00000456957 MYOM1P52179 1685 aa22.63■■□□□ 1.21
PKNOX1-204ENST00000456957 SLC24A1O60721 1099 aa22.63■■□□□ 1.21
PKNOX1-204ENST00000456957 CDK19Q9BWU1 502 aa22.63■■□□□ 1.21
PKNOX1-204ENST00000456957 ATP7BP35670 1465 aa22.62■■□□□ 1.21
PKNOX1-204ENST00000456957 C11orf95C9JLR9 678 aaPredicted RBP22.62■■□□□ 1.21
PKNOX1-204ENST00000456957 UBAP1LF5GYI3 381 aa22.61■■□□□ 1.21
PKNOX1-204ENST00000456957 MST1RQ04912 1400 aa22.6■■□□□ 1.21
PKNOX1-204ENST00000456957 SRPK2P78362 688 aaKnown RBP22.6■■□□□ 1.21
PKNOX1-204ENST00000456957 CABP2Q9NPB3 220 aa22.6■■□□□ 1.21
PKNOX1-204ENST00000456957 ATF3P18847 181 aa22.59■■□□□ 1.21
PKNOX1-204ENST00000456957 ILDR2Q71H61 639 aa22.59■■□□□ 1.21
PKNOX1-204ENST00000456957 ANKARQ7Z5J8 1434 aa22.58■■□□□ 1.21
PKNOX1-204ENST00000456957 SOCS7O14512 581 aa22.58■■□□□ 1.21
PKNOX1-204ENST00000456957 CADPS2Q86UW7 1296 aa22.58■■□□□ 1.21
PKNOX1-204ENST00000456957 KIF7Q2M1P5 1343 aa22.57■■□□□ 1.2
PKNOX1-204ENST00000456957 PRR36Q9H6K5 1346 aa22.57■■□□□ 1.2
PKNOX1-204ENST00000456957 NUTM2FA1L443 756 aa22.57■■□□□ 1.2
PKNOX1-204ENST00000456957 C1orf167Q5SNV9 1468 aa22.56■■□□□ 1.2
PKNOX1-204ENST00000456957 CCDC7Q96M83 1385 aa22.56■■□□□ 1.2
PKNOX1-204ENST00000456957 CDCA8Q53HL2 280 aa22.56■■□□□ 1.2
PKNOX1-204ENST00000456957 WASHC2AQ641Q2 1341 aa22.56■■□□□ 1.2
PKNOX1-204ENST00000456957 ATAD2Q6PL18 1390 aa22.55■■□□□ 1.2
PKNOX1-204ENST00000456957 PUS7Q96PZ0 661 aaKnown RBP22.55■■□□□ 1.2
PKNOX1-204ENST00000456957 NUDT16Q96DE0 195 aaKnown RBP22.54■■□□□ 1.2
PKNOX1-204ENST00000456957 KIF1AQ12756 1690 aa22.54■■□□□ 1.2
PKNOX1-204ENST00000456957 ZNF316A6NFI3 1004 aaPredicted RBP22.53■■□□□ 1.2
PKNOX1-204ENST00000456957 AKAP12Q02952 1782 aa22.53■■□□□ 1.2
PKNOX1-204ENST00000456957 POLR3GLQ9BT43 218 aa22.52■■□□□ 1.2
PKNOX1-204ENST00000456957 PPIP5K1Q6PFW1 1433 aa22.51■■□□□ 1.19
PKNOX1-204ENST00000456957 ROBO1Q9Y6N7 1651 aa22.49■■□□□ 1.19
PKNOX1-204ENST00000456957 CCDC61Q9Y6R9 512 aa22.49■■□□□ 1.19
PKNOX1-204ENST00000456957 TOM1O60784 492 aa22.48■■□□□ 1.19
PKNOX1-204ENST00000456957 SLAIN2Q9P270 581 aa22.48■■□□□ 1.19
PKNOX1-204ENST00000456957 MON2Q7Z3U7 1717 aa22.48■■□□□ 1.19
PKNOX1-204ENST00000456957 NINLQ9Y2I6 1382 aa22.47■■□□□ 1.19
PKNOX1-204ENST00000456957 ORAI2Q96SN7 254 aa22.46■■□□□ 1.19
PKNOX1-204ENST00000456957 CD163L1Q9NR16 1453 aa22.46■■□□□ 1.19
PKNOX1-204ENST00000456957 NHSL1Q5SYE7 1610 aa22.46■■□□□ 1.19
PKNOX1-204ENST00000456957 ESCO1Q5FWF5 840 aa22.45■■□□□ 1.18
PKNOX1-204ENST00000456957 TMC1Q8TDI8 760 aa22.45■■□□□ 1.18
PKNOX1-204ENST00000456957 CABP1Q9NZU7 370 aa22.45■■□□□ 1.18
PKNOX1-204ENST00000456957 SLC12A5Q9H2X9 1139 aa22.44■■□□□ 1.18
PKNOX1-204ENST00000456957 PLEKHG3A1L390 1219 aa22.43■■□□□ 1.18
PKNOX1-204ENST00000456957 PMFBP1Q8TBY8 1022 aa22.43■■□□□ 1.18
PKNOX1-204ENST00000456957 PHF8Q9UPP1 1060 aa22.43■■□□□ 1.18
PKNOX1-204ENST00000456957 NRKQ7Z2Y5 1582 aa22.42■■□□□ 1.18
PKNOX1-204ENST00000456957 POLR3AO14802 1390 aaPredicted RBP22.41■■□□□ 1.18
PKNOX1-204ENST00000456957 BRINP3Q76B58 766 aa22.41■■□□□ 1.18
PKNOX1-204ENST00000456957 CPSF1Q10570 1443 aaKnown RBP22.4■■□□□ 1.18
PKNOX1-204ENST00000456957 A0A1W2PP64 1363 aa22.4■■□□□ 1.18
PKNOX1-204ENST00000456957 SCAF1Q9H7N4 1312 aaKnown RBP22.4■■□□□ 1.18
PKNOX1-204ENST00000456957 ANKRD36BQ8N2N9 1353 aa22.39■■□□□ 1.18
PKNOX1-204ENST00000456957 ACEP12821 1306 aa22.39■■□□□ 1.18
PKNOX1-204ENST00000456957 TRPM3Q9HCF6 1732 aaPredicted RBP22.39■■□□□ 1.17
PKNOX1-204ENST00000456957 PIP4K2BP78356 416 aa22.38■■□□□ 1.17
PKNOX1-204ENST00000456957 NGDNQ8NEJ9 315 aaKnown RBP22.37■■□□□ 1.17
PKNOX1-204ENST00000456957 AHDC1Q5TGY3 1603 aaPredicted RBP22.37■■□□□ 1.17
PKNOX1-204ENST00000456957 TERF2IPQ9NYB0 399 aa22.36■■□□□ 1.17
PKNOX1-204ENST00000456957 PXDNQ92626 1479 aa22.35■■□□□ 1.17
PKNOX1-204ENST00000456957 PHLPP1O60346 1717 aa22.35■■□□□ 1.17
PKNOX1-204ENST00000456957 USP6P35125 1406 aa22.35■■□□□ 1.17
PKNOX1-204ENST00000456957 HSPA1LP34931 641 aa22.35■■□□□ 1.17
PKNOX1-204ENST00000456957 KIF20BQ96Q89 1820 aa22.35■■□□□ 1.17
PKNOX1-204ENST00000456957 KTN1Q86UP2 1357 aaKnown RBP22.35■■□□□ 1.17
PKNOX1-204ENST00000456957 FOXO3O43524 673 aa22.34■■□□□ 1.17
PKNOX1-204ENST00000456957 HDGFL2Q7Z4V5 671 aaPredicted RBP22.34■■□□□ 1.17
PKNOX1-204ENST00000456957 PANK3Q9H999 370 aa22.34■■□□□ 1.17
PKNOX1-204ENST00000456957 DDX17Q92841 729 aaKnown RBP22.33■■□□□ 1.17
PKNOX1-204ENST00000456957 NPHP3Q7Z494 1330 aa22.32■■□□□ 1.16
PKNOX1-204ENST00000456957 DDX10Q13206 875 aaKnown RBP22.32■■□□□ 1.16
PKNOX1-204ENST00000456957 ALS2Q96Q42 1657 aa22.32■■□□□ 1.16
PKNOX1-204ENST00000456957 NSD3Q9BZ95 1437 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms