RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 SLFN5Q08AF3 891 aa19.84■□□□□ 0.77
LDLR-202ENST00000455727 MORC1Q86VD1 984 aa19.84■□□□□ 0.77
LDLR-202ENST00000455727 ANKRD36BQ8N2N9 1353 aa19.84■□□□□ 0.77
LDLR-202ENST00000455727 NSD2O96028 1365 aa19.83■□□□□ 0.77
LDLR-202ENST00000455727 CGNL1Q0VF96 1302 aa19.83■□□□□ 0.77
LDLR-202ENST00000455727 NINLQ9Y2I6 1382 aa19.83■□□□□ 0.76
LDLR-202ENST00000455727 SHPRHQ149N8 1683 aa19.82■□□□□ 0.76
LDLR-202ENST00000455727 APAF1O14727 1248 aa19.81■□□□□ 0.76
LDLR-202ENST00000455727 CCDC146Q8IYE0 955 aa19.81■□□□□ 0.76
LDLR-202ENST00000455727 PTPRMP28827 1452 aa19.8■□□□□ 0.76
LDLR-202ENST00000455727 PLIN1O60240 522 aa19.79■□□□□ 0.76
LDLR-202ENST00000455727 CLTCQ00610 1675 aaKnown RBP19.78■□□□□ 0.76
LDLR-202ENST00000455727 MSH5O43196 834 aa19.78■□□□□ 0.76
LDLR-202ENST00000455727 FBXO31Q5XUX0 539 aaPredicted RBP19.78■□□□□ 0.76
LDLR-202ENST00000455727 E9PSI1 815 aa19.77■□□□□ 0.76
LDLR-202ENST00000455727 YTHDC2Q9H6S0 1430 aaKnown RBP19.77■□□□□ 0.76
LDLR-202ENST00000455727 NKTRP30414 1462 aaKnown RBP19.77■□□□□ 0.75
LDLR-202ENST00000455727 ALKQ9UM73 1620 aa19.77■□□□□ 0.75
LDLR-202ENST00000455727 SPATA31D1Q6ZQQ2 1576 aa19.76■□□□□ 0.75
LDLR-202ENST00000455727 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.76■□□□□ 0.75
LDLR-202ENST00000455727 CRBNQ96SW2 442 aa19.76■□□□□ 0.75
LDLR-202ENST00000455727 CABP2Q9NPB3 220 aa19.75■□□□□ 0.75
LDLR-202ENST00000455727 TCERG1O14776 1098 aaKnown RBP19.74■□□□□ 0.75
LDLR-202ENST00000455727 ATAD2Q6PL18 1390 aa19.74■□□□□ 0.75
LDLR-202ENST00000455727 CFAP53Q96M91 514 aa19.73■□□□□ 0.75
LDLR-202ENST00000455727 STK26Q9P289 416 aa19.73■□□□□ 0.75
LDLR-202ENST00000455727 ABCC11Q96J66 1382 aa19.73■□□□□ 0.75
LDLR-202ENST00000455727 MTHFSP49914 203 aa19.72■□□□□ 0.75
LDLR-202ENST00000455727 NCBP3Q53F19 620 aaKnown RBP19.72■□□□□ 0.75
LDLR-202ENST00000455727 RUNDC1Q96C34 613 aa19.72■□□□□ 0.75
LDLR-202ENST00000455727 SPINK5Q9NQ38 1064 aaPredicted RBP19.72■□□□□ 0.75
LDLR-202ENST00000455727 A2ML1A8K2U0 1454 aa19.71■□□□□ 0.75
LDLR-202ENST00000455727 A0A1W2PP64 1363 aa19.7■□□□□ 0.74
LDLR-202ENST00000455727 WWC1Q8IX03 1113 aa19.7■□□□□ 0.74
LDLR-202ENST00000455727 PRAM1Q96QH2 718 aa19.7■□□□□ 0.74
LDLR-202ENST00000455727 STAG3Q9UJ98 1225 aa19.7■□□□□ 0.74
LDLR-202ENST00000455727 ARHGEF40Q8TER5 1519 aa19.7■□□□□ 0.74
LDLR-202ENST00000455727 IQSEC2Q5JU85 1478 aa19.7■□□□□ 0.74
LDLR-202ENST00000455727 ANKRD26Q9UPS8 1709 aa19.7■□□□□ 0.74
LDLR-202ENST00000455727 TNNT2P45379 298 aaPredicted RBP19.7■□□□□ 0.74
LDLR-202ENST00000455727 SRPK2P78362 688 aaKnown RBP19.7■□□□□ 0.74
LDLR-202ENST00000455727 C20orf194Q5TEA3 1177 aa19.7■□□□□ 0.74
LDLR-202ENST00000455727 DLC1Q96QB1 1528 aa19.7■□□□□ 0.74
LDLR-202ENST00000455727 MED14O60244 1454 aa19.7■□□□□ 0.74
LDLR-202ENST00000455727 MS4A1P11836 297 aa19.69■□□□□ 0.74
LDLR-202ENST00000455727 SAFB2Q14151 953 aaKnown RBP eCLIP19.69■□□□□ 0.74
LDLR-202ENST00000455727 KIF13AQ9H1H9 1805 aa19.69■□□□□ 0.74
LDLR-202ENST00000455727 PHF23Q9BUL5 403 aaPredicted RBP19.69■□□□□ 0.74
LDLR-202ENST00000455727 POGKQ9P215 609 aa19.69■□□□□ 0.74
LDLR-202ENST00000455727 TERF2IPQ9NYB0 399 aa19.68■□□□□ 0.74
LDLR-202ENST00000455727 SETD1AO15047 1707 aaKnown RBP19.67■□□□□ 0.74
LDLR-202ENST00000455727 CCDC27Q2M243 656 aa19.67■□□□□ 0.74
LDLR-202ENST00000455727 CD163L1Q9NR16 1453 aa19.66■□□□□ 0.74
LDLR-202ENST00000455727 MINK1Q8N4C8 1332 aaPredicted RBP19.66■□□□□ 0.74
LDLR-202ENST00000455727 RIMS2Q9UQ26 1411 aa19.66■□□□□ 0.74
LDLR-202ENST00000455727 WDR63Q8IWG1 891 aa19.65■□□□□ 0.74
LDLR-202ENST00000455727 DMRT2Q9Y5R5 561 aa19.65■□□□□ 0.74
LDLR-202ENST00000455727 TCP11L2Q8N4U5 519 aa19.65■□□□□ 0.74
LDLR-202ENST00000455727 KDM2BQ8NHM5 1336 aa19.64■□□□□ 0.73
LDLR-202ENST00000455727 NLRP1Q9C000 1473 aa19.62■□□□□ 0.73
LDLR-202ENST00000455727 CDK19Q9BWU1 502 aa19.62■□□□□ 0.73
LDLR-202ENST00000455727 ADGRB2O60241 1585 aa19.62■□□□□ 0.73
LDLR-202ENST00000455727 CENPQQ7L2Z9 268 aaPredicted RBP19.62■□□□□ 0.73
LDLR-202ENST00000455727 FYB1O15117 783 aa19.61■□□□□ 0.73
LDLR-202ENST00000455727 HDGFL2Q7Z4V5 671 aaPredicted RBP19.6■□□□□ 0.73
LDLR-202ENST00000455727 KIF20BQ96Q89 1820 aa19.6■□□□□ 0.73
LDLR-202ENST00000455727 ERICH6Q7L0X2 663 aa19.6■□□□□ 0.73
LDLR-202ENST00000455727 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.6■□□□□ 0.73
LDLR-202ENST00000455727 BCAR3O75815 825 aa19.59■□□□□ 0.73
LDLR-202ENST00000455727 ANP32AP39687 249 aaKnown RBP19.59■□□□□ 0.73
LDLR-202ENST00000455727 PDE3AQ14432 1141 aa19.59■□□□□ 0.73
LDLR-202ENST00000455727 SENP3Q9H4L4 574 aaPredicted RBP19.59■□□□□ 0.73
LDLR-202ENST00000455727 COL3A1P02461 1466 aaPredicted RBP19.59■□□□□ 0.73
LDLR-202ENST00000455727 NRXN3Q9Y4C0 1643 aa19.59■□□□□ 0.73
LDLR-202ENST00000455727 ZMYM3Q14202 1370 aa19.59■□□□□ 0.73
LDLR-202ENST00000455727 PDE4AP27815 886 aa19.58■□□□□ 0.73
LDLR-202ENST00000455727 BACH2Q9BYV9 841 aa19.58■□□□□ 0.73
LDLR-202ENST00000455727 GGNBP2Q9H3C7 697 aa19.58■□□□□ 0.73
LDLR-202ENST00000455727 U2AF1L5P0DN76 240 aaPredicted RBP19.58■□□□□ 0.72
LDLR-202ENST00000455727 U2AF1Q01081 240 aaKnown RBP eCLIP19.58■□□□□ 0.72
LDLR-202ENST00000455727 MLECQ14165 292 aa19.58■□□□□ 0.72
LDLR-202ENST00000455727 ATP7BP35670 1465 aa19.57■□□□□ 0.72
LDLR-202ENST00000455727 NEUROD2Q15784 382 aa19.56■□□□□ 0.72
LDLR-202ENST00000455727 RRP7AQ9Y3A4 280 aaKnown RBP19.56■□□□□ 0.72
LDLR-202ENST00000455727 IPO9Q96P70 1041 aaKnown RBP19.56■□□□□ 0.72
LDLR-202ENST00000455727 ESF1Q9H501 851 aaKnown RBP19.56■□□□□ 0.72
LDLR-202ENST00000455727 CABP1Q9NZU7 370 aa19.56■□□□□ 0.72
LDLR-202ENST00000455727 PNPLA6Q8IY17 1366 aa19.55■□□□□ 0.72
LDLR-202ENST00000455727 KNDC1Q76NI1 1749 aa19.55■□□□□ 0.72
LDLR-202ENST00000455727 HDGFP51858 240 aaKnown RBP19.54■□□□□ 0.72
LDLR-202ENST00000455727 SIRT1Q96EB6 747 aa19.54■□□□□ 0.72
LDLR-202ENST00000455727 MYH16Q9H6N6 1097 aa19.53■□□□□ 0.72
LDLR-202ENST00000455727 WAPLQ7Z5K2 1190 aa19.53■□□□□ 0.72
LDLR-202ENST00000455727 PLEKHF1Q96S99 279 aa19.53■□□□□ 0.72
LDLR-202ENST00000455727 NOP58Q9Y2X3 529 aaKnown RBP19.53■□□□□ 0.72
LDLR-202ENST00000455727 RARSP54136 660 aaKnown RBP19.52■□□□□ 0.72
LDLR-202ENST00000455727 FAM135BQ49AJ0 1406 aa19.51■□□□□ 0.71
LDLR-202ENST00000455727 TECPR2O15040 1411 aa19.51■□□□□ 0.71
LDLR-202ENST00000455727 AAMPQ13685 434 aa19.51■□□□□ 0.71
LDLR-202ENST00000455727 PNNQ9H307 717 aaKnown RBP19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms