RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 CD2BP2O95400 341 aaKnown RBP9.13□□□□□ -0.95
USP40-209ENST00000452724 EMID1Q96A84 441 aaPredicted RBP9.13□□□□□ -0.95
USP40-209ENST00000452724 PRDM9Q9NQV7 894 aa9.13□□□□□ -0.95
USP40-209ENST00000452724 TRIM66O15016 1216 aa9.12□□□□□ -0.95
USP40-209ENST00000452724 PLA2G2CQ5R387 149 aa9.12□□□□□ -0.95
USP40-209ENST00000452724 MMP16P51512 607 aa9.11□□□□□ -0.95
USP40-209ENST00000452724 PRR20EP86478 221 aa9.11□□□□□ -0.95
USP40-209ENST00000452724 PRR20CP86479 221 aa9.11□□□□□ -0.95
USP40-209ENST00000452724 PRR20DP86480 221 aa9.11□□□□□ -0.95
USP40-209ENST00000452724 PRR20BP86481 221 aa9.11□□□□□ -0.95
USP40-209ENST00000452724 PRR20AP86496 221 aa9.11□□□□□ -0.95
USP40-209ENST00000452724 DIXDC1Q155Q3 683 aa9.11□□□□□ -0.95
USP40-209ENST00000452724 FDX1P10109 184 aa9.1□□□□□ -0.95
USP40-209ENST00000452724 TRAF7Q6Q0C0 670 aa9.1□□□□□ -0.95
USP40-209ENST00000452724 HLA-CQ95604 372 aa9.1□□□□□ -0.95
USP40-209ENST00000452724 DXOO77932 396 aaKnown RBP9.09□□□□□ -0.95
USP40-209ENST00000452724 GUCA2AQ02747 115 aa9.09□□□□□ -0.95
USP40-209ENST00000452724 PARP9Q8IXQ6 854 aa9.09□□□□□ -0.95
USP40-209ENST00000452724 SPIRE2Q8WWL2 714 aa9.09□□□□□ -0.95
USP40-209ENST00000452724 BEGAINQ9BUH8 593 aa9.09□□□□□ -0.95
USP40-209ENST00000452724 C6orf229H3BNL8 230 aa9.08□□□□□ -0.96
USP40-209ENST00000452724 RETREG3Q86VR2 466 aa9.08□□□□□ -0.96
USP40-209ENST00000452724 PKDCCQ504Y2 493 aa9.07□□□□□ -0.96
USP40-209ENST00000452724 TRIM67Q6ZTA4 783 aa9.07□□□□□ -0.96
USP40-209ENST00000452724 TNFRSF10AO00220 468 aa9.06□□□□□ -0.96
USP40-209ENST00000452724 JUNDP17535 347 aa9.06□□□□□ -0.96
USP40-209ENST00000452724 FOXC1Q12948 553 aa9.06□□□□□ -0.96
USP40-209ENST00000452724 GDF9O60383 454 aa9.05□□□□□ -0.96
USP40-209ENST00000452724 PDE4DQ08499 809 aa9.05□□□□□ -0.96
USP40-209ENST00000452724 CCDC24Q8N4L8 307 aa9.05□□□□□ -0.96
USP40-209ENST00000452724 SLC24A3Q9HC58 644 aa9.05□□□□□ -0.96
USP40-209ENST00000452724 MOXD2PA6NHM9 499 aa9.04□□□□□ -0.96
USP40-209ENST00000452724 DGAT1O75907 488 aa9.04□□□□□ -0.96
USP40-209ENST00000452724 GJA5P36382 358 aa9.04□□□□□ -0.96
USP40-209ENST00000452724 SYMPKQ92797 1274 aaKnown RBP9.04□□□□□ -0.96
USP40-209ENST00000452724 TBC1D2Q9BYX2 928 aa9.04□□□□□ -0.96
USP40-209ENST00000452724 SPDYE5A6NIY4 337 aa9.03□□□□□ -0.96
USP40-209ENST00000452724 NDUFV2P19404 249 aa9.03□□□□□ -0.96
USP40-209ENST00000452724 PCDHGC3Q9UN70 934 aa9.03□□□□□ -0.96
USP40-209ENST00000452724 FAM187AA6NFU0 413 aa9.02□□□□□ -0.97
USP40-209ENST00000452724 TRIM32Q13049 653 aa9.02□□□□□ -0.97
USP40-209ENST00000452724 PKD2L1Q9P0L9 805 aa9.02□□□□□ -0.97
USP40-209ENST00000452724 MS4A1P11836 297 aa9.01□□□□□ -0.97
USP40-209ENST00000452724 MTMR2Q13614 643 aa9.01□□□□□ -0.97
USP40-209ENST00000452724 CYP4X1Q8N118 509 aa9.01□□□□□ -0.97
USP40-209ENST00000452724 NUDT12Q9BQG2 462 aa9.01□□□□□ -0.97
USP40-209ENST00000452724 RSBN1LQ6PCB5 846 aaPredicted RBP9□□□□□ -0.97
USP40-209ENST00000452724 TTC24A2A3L6 582 aaPredicted RBP8.98□□□□□ -0.97
USP40-209ENST00000452724 WNT7AO00755 349 aa8.98□□□□□ -0.97
USP40-209ENST00000452724 SPTLC1O15269 473 aa8.98□□□□□ -0.97
USP40-209ENST00000452724 PRR7Q8TB68 274 aa8.98□□□□□ -0.97
USP40-209ENST00000452724 LCE2BO14633 110 aa8.97□□□□□ -0.97
USP40-209ENST00000452724 CCNYL3P0C7X3 344 aa8.97□□□□□ -0.97
USP40-209ENST00000452724 WNT7BP56706 349 aa8.97□□□□□ -0.97
USP40-209ENST00000452724 PTPRNQ16849 979 aa8.97□□□□□ -0.97
USP40-209ENST00000452724 DESI1Q6ICB0 168 aa8.97□□□□□ -0.97
USP40-209ENST00000452724 RIC3Q7Z5B4 369 aa8.97□□□□□ -0.97
USP40-209ENST00000452724 ZBTB3Q9H5J0 574 aa8.97□□□□□ -0.97
USP40-209ENST00000452724 MYT1Q01538 1121 aa8.95□□□□□ -0.98
USP40-209ENST00000452724 PRPF38BQ5VTL8 546 aaKnown RBP8.95□□□□□ -0.98
USP40-209ENST00000452724 RSPH6AQ9H0K4 717 aa8.95□□□□□ -0.98
USP40-209ENST00000452724 TOR4AQ9NXH8 423 aa8.95□□□□□ -0.98
USP40-209ENST00000452724 SNIP1Q8TAD8 396 aaKnown RBP8.94□□□□□ -0.98
USP40-209ENST00000452724 HRCP23327 699 aa8.92□□□□□ -0.98
USP40-209ENST00000452724 CSPP1Q1MSJ5 1256 aa8.92□□□□□ -0.98
USP40-209ENST00000452724 RC3H1Q5TC82 1133 aaKnown RBP8.92□□□□□ -0.98
USP40-209ENST00000452724 MYSM1Q5VVJ2 828 aa8.92□□□□□ -0.98
USP40-209ENST00000452724 ZNF787Q6DD87 383 aa8.92□□□□□ -0.98
USP40-209ENST00000452724 MRGPRX2Q96LB1 330 aa8.92□□□□□ -0.98
USP40-209ENST00000452724 EVA1BQ9NVM1 165 aa8.92□□□□□ -0.98
USP40-209ENST00000452724 PCDHB15Q9Y5E8 787 aa8.92□□□□□ -0.98
USP40-209ENST00000452724 NUTM2BA6NNL0 878 aaPredicted RBP8.91□□□□□ -0.98
USP40-209ENST00000452724 NUTM2EB1AL46 878 aaPredicted RBP8.91□□□□□ -0.98
USP40-209ENST00000452724 KCNH2Q12809 1159 aa8.91□□□□□ -0.98
USP40-209ENST00000452724 TUSC1Q2TAM9 212 aa8.91□□□□□ -0.98
USP40-209ENST00000452724 NUTM2DQ5VT03 806 aaPredicted RBP8.91□□□□□ -0.98
USP40-209ENST00000452724 NUTM2AQ8IVF1 878 aaPredicted RBP8.91□□□□□ -0.98
USP40-209ENST00000452724 CTC1Q2NKJ3 1217 aa8.9□□□□□ -0.98
USP40-209ENST00000452724 PTCRAQ6ISU1 281 aaPredicted RBP8.9□□□□□ -0.98
USP40-209ENST00000452724 AVPP01185 164 aa8.89□□□□□ -0.99
USP40-209ENST00000452724 SKOR1P84550 965 aa8.89□□□□□ -0.99
USP40-209ENST00000452724 LYPD8Q6UX82 237 aa8.89□□□□□ -0.99
USP40-209ENST00000452724 UNC93B1Q9H1C4 597 aa8.89□□□□□ -0.99
USP40-209ENST00000452724 CFAP99D6REC4 459 aa8.88□□□□□ -0.99
USP40-209ENST00000452724 CTHP32929 405 aa8.88□□□□□ -0.99
USP40-209ENST00000452724 CLK2P49760 499 aaKnown RBP8.88□□□□□ -0.99
USP40-209ENST00000452724 CRIPAKQ8N1N5 446 aa8.88□□□□□ -0.99
USP40-209ENST00000452724 EHBP1Q8NDI1 1231 aa8.88□□□□□ -0.99
USP40-209ENST00000452724 CABLES1Q8TDN4 633 aa8.88□□□□□ -0.99
USP40-209ENST00000452724 TSC1Q92574 1164 aa8.88□□□□□ -0.99
USP40-209ENST00000452724 LIMD1Q9UGP4 676 aa8.88□□□□□ -0.99
USP40-209ENST00000452724 AXIN1O15169 862 aa8.87□□□□□ -0.99
USP40-209ENST00000452724 HELBQ8NG08 1087 aaPredicted RBP8.87□□□□□ -0.99
USP40-209ENST00000452724 DDRGK1Q96HY6 314 aa8.87□□□□□ -0.99
USP40-209ENST00000452724 AAASQ9NRG9 546 aa8.87□□□□□ -0.99
USP40-209ENST00000452724 BRPF1P55201 1214 aaPredicted RBP8.86□□□□□ -0.99
USP40-209ENST00000452724 NEUROD2Q15784 382 aa8.86□□□□□ -0.99
USP40-209ENST00000452724 KDM4CQ9H3R0 1056 aa8.86□□□□□ -0.99
USP40-209ENST00000452724 ST8SIA5O15466 376 aa8.85□□□□□ -0.99
USP40-209ENST00000452724 LILRB3O75022 631 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms