RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	SETBP1	Q9Y6X0	1596 aa		12.99	□□□□□ -0.33
RFX3-209	ENST00000451859	MSH6	P52701	1360 aa		12.99	□□□□□ -0.33
RFX3-209	ENST00000451859	TBX22	Q9Y458	520 aa		12.99	□□□□□ -0.33
RFX3-209	ENST00000451859	ZNF579	Q8NAF0	562 aa	Known RBP	12.98	□□□□□ -0.33
RFX3-209	ENST00000451859	SETD1A	O15047	1707 aa	Known RBP	12.97	□□□□□ -0.33
RFX3-209	ENST00000451859	PTPRU	Q92729	1446 aa		12.96	□□□□□ -0.33
RFX3-209	ENST00000451859	AMOTL2	Q9Y2J4	779 aa		12.95	□□□□□ -0.34
RFX3-209	ENST00000451859	NALCN	Q8IZF0	1738 aa		12.95	□□□□□ -0.34
RFX3-209	ENST00000451859	IFT172	Q9UG01	1749 aa		12.95	□□□□□ -0.34
RFX3-209	ENST00000451859	DCBLD2	Q96PD2	775 aa		12.94	□□□□□ -0.34
RFX3-209	ENST00000451859	FAM135B	Q49AJ0	1406 aa		12.94	□□□□□ -0.34
RFX3-209	ENST00000451859	MET	P08581	1390 aa		12.94	□□□□□ -0.34
RFX3-209	ENST00000451859	PIK3R4	Q99570	1358 aa		12.94	□□□□□ -0.34
RFX3-209	ENST00000451859	CREBZF	Q9NS37	354 aa		12.92	□□□□□ -0.34
RFX3-209	ENST00000451859	CCDC144A	A2RUR9	1427 aa		12.91	□□□□□ -0.34
RFX3-209	ENST00000451859	SETD5	Q9C0A6	1442 aa		12.91	□□□□□ -0.34
RFX3-209	ENST00000451859	MPHOSPH9	Q99550	1183 aa		12.91	□□□□□ -0.34
RFX3-209	ENST00000451859	SLAIN2	Q9P270	581 aa		12.91	□□□□□ -0.34
RFX3-209	ENST00000451859	ATF3	P18847	181 aa		12.9	□□□□□ -0.34
RFX3-209	ENST00000451859	ZRANB1	Q9UGI0	708 aa		12.9	□□□□□ -0.34
RFX3-209	ENST00000451859	COL16A1	Q07092	1604 aa	Predicted RBP	12.89	□□□□□ -0.35
RFX3-209	ENST00000451859	RGL3	Q3MIN7	710 aa		12.89	□□□□□ -0.35
RFX3-209	ENST00000451859	RAB3GAP2	Q9H2M9	1393 aa		12.89	□□□□□ -0.35
RFX3-209	ENST00000451859	NCOA3	Q9Y6Q9	1424 aa		12.88	□□□□□ -0.35
RFX3-209	ENST00000451859	VGF	O15240	615 aa	Predicted RBP	12.88	□□□□□ -0.35
RFX3-209	ENST00000451859	C19orf44	Q9H6X5	657 aa		12.88	□□□□□ -0.35
RFX3-209	ENST00000451859	GALR2	O43603	387 aa	Predicted RBP	12.86	□□□□□ -0.35
RFX3-209	ENST00000451859	CADPS2	Q86UW7	1296 aa		12.86	□□□□□ -0.35
RFX3-209	ENST00000451859	RPGRIP1L	Q68CZ1	1315 aa		12.86	□□□□□ -0.35
RFX3-209	ENST00000451859	NHSL1	Q5SYE7	1610 aa		12.85	□□□□□ -0.35
RFX3-209	ENST00000451859	AHDC1	Q5TGY3	1603 aa	Predicted RBP	12.85	□□□□□ -0.35
RFX3-209	ENST00000451859	SOCS7	O14512	581 aa		12.85	□□□□□ -0.35
RFX3-209	ENST00000451859	SPATA31E1	Q6ZUB1	1445 aa		12.85	□□□□□ -0.35
RFX3-209	ENST00000451859	ADGRL3	Q9HAR2	1447 aa		12.85	□□□□□ -0.35
RFX3-209	ENST00000451859	SHPRH	Q149N8	1683 aa		12.84	□□□□□ -0.35
RFX3-209	ENST00000451859	DCC	P43146	1447 aa		12.84	□□□□□ -0.35
RFX3-209	ENST00000451859	ADGRF5	Q8IZF2	1346 aa		12.84	□□□□□ -0.35
RFX3-209	ENST00000451859	ASXL1	Q8IXJ9	1541 aa		12.83	□□□□□ -0.35
RFX3-209	ENST00000451859	KNDC1	Q76NI1	1749 aa		12.83	□□□□□ -0.36
RFX3-209	ENST00000451859	MST1R	Q04912	1400 aa		12.83	□□□□□ -0.36
RFX3-209	ENST00000451859	PLSCR2	Q9NRY7	297 aa		12.83	□□□□□ -0.36
RFX3-209	ENST00000451859	ROBO2	Q9HCK4	1378 aa		12.82	□□□□□ -0.36
RFX3-209	ENST00000451859	PTCH1	Q13635	1447 aa		12.82	□□□□□ -0.36
RFX3-209	ENST00000451859	OTUD5	Q96G74	571 aa		12.82	□□□□□ -0.36
RFX3-209	ENST00000451859	JCAD	Q9P266	1359 aa		12.81	□□□□□ -0.36
RFX3-209	ENST00000451859	BRINP3	Q76B58	766 aa		12.81	□□□□□ -0.36
RFX3-209	ENST00000451859	STK26	Q9P289	416 aa		12.81	□□□□□ -0.36
RFX3-209	ENST00000451859	POTEB2	H3BUK9	544 aa		12.8	□□□□□ -0.36
RFX3-209	ENST00000451859	LAMC1	P11047	1609 aa		12.8	□□□□□ -0.36
RFX3-209	ENST00000451859	ANKRD30B	Q9BXX2	1392 aa		12.8	□□□□□ -0.36
RFX3-209	ENST00000451859	RGPD8	O14715	1765 aa	Predicted RBP	12.79	□□□□□ -0.36
RFX3-209	ENST00000451859	ACIN1	Q9UKV3	1341 aa	Known RBP	12.79	□□□□□ -0.36
RFX3-209	ENST00000451859	PIK3C2G	O75747	1445 aa		12.79	□□□□□ -0.36
RFX3-209	ENST00000451859	LRP6	O75581	1613 aa		12.78	□□□□□ -0.36
RFX3-209	ENST00000451859	TMEM132E	Q6IEE7	984 aa		12.78	□□□□□ -0.36
RFX3-209	ENST00000451859	DDX17	Q92841	729 aa	Known RBP	12.78	□□□□□ -0.36
RFX3-209	ENST00000451859	RGS17	Q9UGC6	210 aa	Predicted RBP	12.77	□□□□□ -0.37
RFX3-209	ENST00000451859	CDC42BPG	Q6DT37	1551 aa		12.77	□□□□□ -0.37
RFX3-209	ENST00000451859	MEX3C	Q5U5Q3	659 aa	Known RBP	12.76	□□□□□ -0.37
RFX3-209	ENST00000451859	PRAG1	Q86YV5	1406 aa		12.76	□□□□□ -0.37
RFX3-209	ENST00000451859	C1orf167	Q5SNV9	1468 aa		12.76	□□□□□ -0.37
RFX3-209	ENST00000451859	FMN2	Q9NZ56	1722 aa		12.76	□□□□□ -0.37
RFX3-209	ENST00000451859	NUTM2B	A6NNL0	878 aa	Predicted RBP	12.75	□□□□□ -0.37
RFX3-209	ENST00000451859	NUTM2E	B1AL46	878 aa	Predicted RBP	12.75	□□□□□ -0.37
RFX3-209	ENST00000451859	MYOM2	P54296	1465 aa		12.75	□□□□□ -0.37
RFX3-209	ENST00000451859	NUTM2A	Q8IVF1	878 aa	Predicted RBP	12.75	□□□□□ -0.37
RFX3-209	ENST00000451859	YTHDC2	Q9H6S0	1430 aa	Known RBP	12.74	□□□□□ -0.37
RFX3-209	ENST00000451859	LRPPRC	P42704	1394 aa	Known RBP	12.74	□□□□□ -0.37
RFX3-209	ENST00000451859	PLEKHH1	Q9ULM0	1364 aa		12.74	□□□□□ -0.37
RFX3-209	ENST00000451859	WAPL	Q7Z5K2	1190 aa		12.74	□□□□□ -0.37
RFX3-209	ENST00000451859	SPATA31A6	Q5VVP1	1343 aa		12.73	□□□□□ -0.37
RFX3-209	ENST00000451859	NUTM2F	A1L443	756 aa		12.73	□□□□□ -0.37
RFX3-209	ENST00000451859	POTEA	Q6S8J7	498 aa		12.73	□□□□□ -0.37
RFX3-209	ENST00000451859	ORAI2	Q96SN7	254 aa		12.73	□□□□□ -0.37
RFX3-209	ENST00000451859	NRXN1	Q9ULB1	1477 aa		12.72	□□□□□ -0.37
RFX3-209	ENST00000451859	TECPR2	O15040	1411 aa		12.72	□□□□□ -0.37
RFX3-209	ENST00000451859	CFAP70	Q5T0N1	1121 aa		12.72	□□□□□ -0.37
RFX3-209	ENST00000451859	PHF12	Q96QT6	1004 aa		12.72	□□□□□ -0.37
RFX3-209	ENST00000451859	KDM2A	Q9Y2K7	1162 aa		12.72	□□□□□ -0.37
RFX3-209	ENST00000451859	ABCC11	Q96J66	1382 aa		12.7	□□□□□ -0.38
RFX3-209	ENST00000451859	SAFB2	Q14151	953 aa	Known RBP eCLIP	12.7	□□□□□ -0.38
RFX3-209	ENST00000451859	PNPLA6	Q8IY17	1366 aa		12.69	□□□□□ -0.38
RFX3-209	ENST00000451859	MARF1	Q9Y4F3	1742 aa	Known RBP	12.69	□□□□□ -0.38
RFX3-209	ENST00000451859	ESCO1	Q5FWF5	840 aa		12.69	□□□□□ -0.38
RFX3-209	ENST00000451859	PELP1	Q8IZL8	1130 aa	Known RBP	12.69	□□□□□ -0.38
RFX3-209	ENST00000451859	LRRC59	Q96AG4	307 aa	Known RBP	12.69	□□□□□ -0.38
RFX3-209	ENST00000451859	C14orf93	Q9H972	538 aa	Known RBP	12.69	□□□□□ -0.38
RFX3-209	ENST00000451859	KIF1A	Q12756	1690 aa		12.69	□□□□□ -0.38
RFX3-209	ENST00000451859	DHX57	Q6P158	1386 aa	Known RBP	12.69	□□□□□ -0.38
RFX3-209	ENST00000451859	MNX1	P50219	401 aa	Predicted RBP	12.68	□□□□□ -0.38
RFX3-209	ENST00000451859	XPC	Q01831	940 aa	Predicted RBP	12.68	□□□□□ -0.38
RFX3-209	ENST00000451859	DCAF11	Q8TEB1	546 aa		12.68	□□□□□ -0.38
RFX3-209	ENST00000451859	ARHGEF28	Q8N1W1	1705 aa	Known RBP	12.68	□□□□□ -0.38
RFX3-209	ENST00000451859	HRC	P23327	699 aa		12.67	□□□□□ -0.38
RFX3-209	ENST00000451859	ADGRB1	O14514	1584 aa		12.67	□□□□□ -0.38
RFX3-209	ENST00000451859	COL22A1	Q8NFW1	1626 aa	Predicted RBP	12.66	□□□□□ -0.38
RFX3-209	ENST00000451859	ADAMTS2	O95450	1211 aa		12.66	□□□□□ -0.38
RFX3-209	ENST00000451859	C8orf37	Q96NL8	207 aa		12.66	□□□□□ -0.38
RFX3-209	ENST00000451859	PRAM1	Q96QH2	718 aa		12.66	□□□□□ -0.38
RFX3-209	ENST00000451859	DLC1	Q96QB1	1528 aa		12.66	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms