RNA–Protein interactions for RNA: ENST00000445902.2

VPS52-212, Transcript of VPS52, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS52, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-212ENST00000445902 CARMIL2Q6F5E8 1435 aa17.54■□□□□ 0.4
VPS52-212ENST00000445902 SCAF11Q99590 1463 aaKnown RBP17.54■□□□□ 0.4
VPS52-212ENST00000445902 ARID3AQ99856 593 aa17.53■□□□□ 0.4
VPS52-212ENST00000445902 KDM5AP29375 1690 aaKnown RBP17.53■□□□□ 0.4
VPS52-212ENST00000445902 IQGAP3Q86VI3 1631 aa17.53■□□□□ 0.4
VPS52-212ENST00000445902 ZMYM3Q14202 1370 aa17.53■□□□□ 0.4
VPS52-212ENST00000445902 NPC1L1Q9UHC9 1359 aa17.53■□□□□ 0.4
VPS52-212ENST00000445902 CEP152O94986 1710 aa17.52■□□□□ 0.4
VPS52-212ENST00000445902 ITPRIPQ8IWB1 547 aa17.52■□□□□ 0.4
VPS52-212ENST00000445902 RUNDC1Q96C34 613 aa17.52■□□□□ 0.4
VPS52-212ENST00000445902 GBP4Q96PP9 640 aa17.52■□□□□ 0.4
VPS52-212ENST00000445902 PDCL3Q9H2J4 239 aa17.52■□□□□ 0.4
VPS52-212ENST00000445902 DDIT3P35638 169 aa17.52■□□□□ 0.39
VPS52-212ENST00000445902 DZIP1LQ8IYY4 767 aaKnown RBP17.52■□□□□ 0.39
VPS52-212ENST00000445902 NGEFQ8N5V2 710 aa17.51■□□□□ 0.39
VPS52-212ENST00000445902 TSR2Q969E8 191 aaKnown RBP17.51■□□□□ 0.39
VPS52-212ENST00000445902 ISY1Q9ULR0 285 aaKnown RBP17.51■□□□□ 0.39
VPS52-212ENST00000445902 AAMPQ13685 434 aa17.51■□□□□ 0.39
VPS52-212ENST00000445902 ZKSCAN2Q63HK3 967 aa17.51■□□□□ 0.39
VPS52-212ENST00000445902 CD2BP2O95400 341 aaKnown RBP17.5■□□□□ 0.39
VPS52-212ENST00000445902 NASPP49321 788 aaPredicted RBP17.5■□□□□ 0.39
VPS52-212ENST00000445902 MORC1Q86VD1 984 aa17.49■□□□□ 0.39
VPS52-212ENST00000445902 NCOA3Q9Y6Q9 1424 aa17.49■□□□□ 0.39
VPS52-212ENST00000445902 LNPKQ9C0E8 428 aa17.49■□□□□ 0.39
VPS52-212ENST00000445902 MRC2Q9UBG0 1479 aa17.48■□□□□ 0.39
VPS52-212ENST00000445902 RAB3GAP1Q15042 981 aa17.48■□□□□ 0.39
VPS52-212ENST00000445902 SMC4Q9NTJ3 1288 aa17.48■□□□□ 0.39
VPS52-212ENST00000445902 SSFA2P28290 1259 aa17.48■□□□□ 0.39
VPS52-212ENST00000445902 FAM13BQ9NYF5 915 aa17.48■□□□□ 0.39
VPS52-212ENST00000445902 RBM42Q9BTD8 480 aaKnown RBP17.47■□□□□ 0.39
VPS52-212ENST00000445902 POLR3AO14802 1390 aaPredicted RBP17.47■□□□□ 0.39
VPS52-212ENST00000445902 SHPRHQ149N8 1683 aa17.47■□□□□ 0.39
VPS52-212ENST00000445902 MSNP26038 577 aaKnown RBP17.47■□□□□ 0.39
VPS52-212ENST00000445902 CFAP70Q5T0N1 1121 aa17.47■□□□□ 0.39
VPS52-212ENST00000445902 PREX2Q70Z35 1606 aa17.47■□□□□ 0.39
VPS52-212ENST00000445902 CCDC173Q0VFZ6 552 aa17.46■□□□□ 0.39
VPS52-212ENST00000445902 ZSCAN30Q86W11 494 aa17.46■□□□□ 0.39
VPS52-212ENST00000445902 SMC5Q8IY18 1101 aa17.46■□□□□ 0.39
VPS52-212ENST00000445902 ARHGAP5Q13017 1502 aa17.46■□□□□ 0.39
VPS52-212ENST00000445902 TRIM27P14373 513 aa17.46■□□□□ 0.39
VPS52-212ENST00000445902 RSPH4AQ5TD94 716 aa17.46■□□□□ 0.39
VPS52-212ENST00000445902 R3HCC1Q9Y3T6 440 aaKnown RBP17.46■□□□□ 0.39
VPS52-212ENST00000445902 IFT140Q96RY7 1462 aa17.46■□□□□ 0.39
VPS52-212ENST00000445902 MAST1Q9Y2H9 1570 aa17.45■□□□□ 0.38
VPS52-212ENST00000445902 RIPK4P57078 832 aa17.45■□□□□ 0.38
VPS52-212ENST00000445902 WDR63Q8IWG1 891 aa17.45■□□□□ 0.38
VPS52-212ENST00000445902 SKOR2Q2VWA4 1001 aaPredicted RBP17.45■□□□□ 0.38
VPS52-212ENST00000445902 ANP32BQ92688 251 aaKnown RBP17.45■□□□□ 0.38
VPS52-212ENST00000445902 DDX49Q9Y6V7 483 aaKnown RBP17.45■□□□□ 0.38
VPS52-212ENST00000445902 ERVK-7P63135 1459 aa17.45■□□□□ 0.38
VPS52-212ENST00000445902 NCLP19338 710 aaKnown RBP17.44■□□□□ 0.38
VPS52-212ENST00000445902 RBM25P49756 843 aaKnown RBP17.44■□□□□ 0.38
VPS52-212ENST00000445902 ATP10AO60312 1499 aa17.44■□□□□ 0.38
VPS52-212ENST00000445902 SPHKAPQ2M3C7 1700 aa17.44■□□□□ 0.38
VPS52-212ENST00000445902 MTHFSP49914 203 aa17.43■□□□□ 0.38
VPS52-212ENST00000445902 EXOSC9Q06265 439 aaKnown RBP17.43■□□□□ 0.38
VPS52-212ENST00000445902 SNX21Q969T3 373 aa17.43■□□□□ 0.38
VPS52-212ENST00000445902 OFD1O75665 1012 aa17.43■□□□□ 0.38
VPS52-212ENST00000445902 IQSEC2Q5JU85 1478 aa17.43■□□□□ 0.38
VPS52-212ENST00000445902 NSD3Q9BZ95 1437 aa17.42■□□□□ 0.38
VPS52-212ENST00000445902 HDAC1Q13547 482 aaPredicted RBP17.42■□□□□ 0.38
VPS52-212ENST00000445902 PHF23Q9BUL5 403 aaPredicted RBP17.42■□□□□ 0.38
VPS52-212ENST00000445902 U2AF1L5P0DN76 240 aaPredicted RBP17.42■□□□□ 0.38
VPS52-212ENST00000445902 U2AF1Q01081 240 aaKnown RBP eCLIP17.42■□□□□ 0.383e-7■■□□□ 12.8
VPS52-212ENST00000445902 GAS2L2Q8NHY3 880 aa17.42■□□□□ 0.38
VPS52-212ENST00000445902 SSH1Q8WYL5 1049 aa17.42■□□□□ 0.38
VPS52-212ENST00000445902 PPP1R9BQ96SB3 815 aa17.42■□□□□ 0.38
VPS52-212ENST00000445902 CIZ1Q9ULV3 898 aaPredicted RBP17.42■□□□□ 0.38
VPS52-212ENST00000445902 SCAPERQ9BY12 1400 aa17.42■□□□□ 0.38
VPS52-212ENST00000445902 TMEM57Q8N5G2 664 aa17.41■□□□□ 0.38
VPS52-212ENST00000445902 KIF2CQ99661 725 aa17.41■□□□□ 0.38
VPS52-212ENST00000445902 XPCQ01831 940 aaPredicted RBP17.41■□□□□ 0.38
VPS52-212ENST00000445902 SLC12A5Q9H2X9 1139 aa17.41■□□□□ 0.38
VPS52-212ENST00000445902 NOB1Q9ULX3 412 aaKnown RBP17.4■□□□□ 0.38
VPS52-212ENST00000445902 TTC37Q6PGP7 1564 aa17.4■□□□□ 0.38
VPS52-212ENST00000445902 DDX19BQ9UMR2 479 aa17.4■□□□□ 0.38
VPS52-212ENST00000445902 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.4■□□□□ 0.38
VPS52-212ENST00000445902 GOLGA6L22H0YM25 854 aa17.39■□□□□ 0.37
VPS52-212ENST00000445902 K7ELQ4 463 aaPredicted RBP17.39■□□□□ 0.37
VPS52-212ENST00000445902 ZBTB7CA1YPR0 619 aa17.38■□□□□ 0.37
VPS52-212ENST00000445902 CAVIN1Q6NZI2 390 aaKnown RBP17.38■□□□□ 0.37
VPS52-212ENST00000445902 ATF7IPQ6VMQ6 1270 aa17.38■□□□□ 0.37
VPS52-212ENST00000445902 MCTP1Q6DN14 999 aa17.38■□□□□ 0.37
VPS52-212ENST00000445902 BAG4O95429 457 aaKnown RBP17.37■□□□□ 0.37
VPS52-212ENST00000445902 CLTCL1P53675 1640 aa17.37■□□□□ 0.37
VPS52-212ENST00000445902 DUOX2Q9NRD8 1548 aa17.37■□□□□ 0.37
VPS52-212ENST00000445902 CALD1Q05682 793 aaKnown RBP17.37■□□□□ 0.37
VPS52-212ENST00000445902 ADGRF5Q8IZF2 1346 aa17.36■□□□□ 0.37
VPS52-212ENST00000445902 NUCB1Q02818 461 aa17.36■□□□□ 0.37
VPS52-212ENST00000445902 CHD1LQ86WJ1 897 aa17.36■□□□□ 0.37
VPS52-212ENST00000445902 SHROOM2Q13796 1616 aa17.36■□□□□ 0.37
VPS52-212ENST00000445902 ANKRD45Q5TZF3 282 aa17.36■□□□□ 0.37
VPS52-212ENST00000445902 UQCRHLA0A096LP55 91 aa17.35■□□□□ 0.37
VPS52-212ENST00000445902 UQCRHP07919 91 aa17.35■□□□□ 0.37
VPS52-212ENST00000445902 KLHL40Q2TBA0 621 aa17.35■□□□□ 0.37
VPS52-212ENST00000445902 C1orf115Q9H7X2 142 aa17.35■□□□□ 0.37
VPS52-212ENST00000445902 PRDM4Q9UKN5 801 aa17.35■□□□□ 0.37
VPS52-212ENST00000445902 CFAP53Q96M91 514 aa17.35■□□□□ 0.37
VPS52-212ENST00000445902 ZBTB40Q9NUA8 1239 aa17.34■□□□□ 0.37
VPS52-212ENST00000445902 PTMSP20962 102 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms