RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 PRDM9Q9NQV7 894 aa10.95□□□□□ -0.66
VPS50-206ENST00000443443 FCF1Q9Y324 198 aaKnown RBP10.94□□□□□ -0.66
VPS50-206ENST00000443443 MOXD2PA6NHM9 499 aa10.93□□□□□ -0.66
VPS50-206ENST00000443443 C6orf229H3BNL8 230 aa10.93□□□□□ -0.66
VPS50-206ENST00000443443 MSS51Q4VC12 460 aa10.93□□□□□ -0.66
VPS50-206ENST00000443443 TBC1D2Q9BYX2 928 aa10.93□□□□□ -0.66
VPS50-206ENST00000443443 LAPTM4AQ15012 233 aa10.92□□□□□ -0.66
VPS50-206ENST00000443443 DIXDC1Q155Q3 683 aa10.92□□□□□ -0.66
VPS50-206ENST00000443443 LIAT1Q6ZQX7 453 aa10.92□□□□□ -0.66
VPS50-206ENST00000443443 PLA2G2CQ5R387 149 aa10.91□□□□□ -0.66
VPS50-206ENST00000443443 SPRYD7Q5W111 196 aa10.91□□□□□ -0.66
VPS50-206ENST00000443443 PCDHGC3Q9UN70 934 aa10.91□□□□□ -0.66
VPS50-206ENST00000443443 EMID1Q96A84 441 aaPredicted RBP10.9□□□□□ -0.66
VPS50-206ENST00000443443 ZBTB24O43167 697 aaPredicted RBP10.89□□□□□ -0.67
VPS50-206ENST00000443443 NRG2O14511 850 aaPredicted RBP10.88□□□□□ -0.67
VPS50-206ENST00000443443 ZNF598Q86UK7 904 aaKnown RBP10.88□□□□□ -0.67
VPS50-206ENST00000443443 CCDC24Q8N4L8 307 aa10.88□□□□□ -0.67
VPS50-206ENST00000443443 PDZRN3Q9UPQ7 1066 aa10.88□□□□□ -0.67
VPS50-206ENST00000443443 CD2BP2O95400 341 aaKnown RBP10.87□□□□□ -0.67
VPS50-206ENST00000443443 RETREG3Q86VR2 466 aa10.87□□□□□ -0.67
VPS50-206ENST00000443443 MMP16P51512 607 aa10.86□□□□□ -0.67
VPS50-206ENST00000443443 ZNF697Q5TEC3 545 aa10.86□□□□□ -0.67
VPS50-206ENST00000443443 TRAF7Q6Q0C0 670 aa10.86□□□□□ -0.67
VPS50-206ENST00000443443 CSPP1Q1MSJ5 1256 aa10.85□□□□□ -0.67
VPS50-206ENST00000443443 RIC3Q7Z5B4 369 aa10.85□□□□□ -0.67
VPS50-206ENST00000443443 DXOO77932 396 aaKnown RBP10.84□□□□□ -0.67
VPS50-206ENST00000443443 RPIAP49247 311 aa10.84□□□□□ -0.67
VPS50-206ENST00000443443 RSBN1LQ6PCB5 846 aaPredicted RBP10.84□□□□□ -0.67
VPS50-206ENST00000443443 GPBP1L1Q9HC44 474 aaPredicted RBP10.84□□□□□ -0.67
VPS50-206ENST00000443443 PCDHB15Q9Y5E8 787 aa10.84□□□□□ -0.67
VPS50-206ENST00000443443 MTMR2Q13614 643 aa10.83□□□□□ -0.68
VPS50-206ENST00000443443 SPTLC1O15269 473 aa10.82□□□□□ -0.68
VPS50-206ENST00000443443 JUNDP17535 347 aa10.82□□□□□ -0.68
VPS50-206ENST00000443443 FOXC1Q12948 553 aa10.82□□□□□ -0.68
VPS50-206ENST00000443443 KDM4CQ9H3R0 1056 aa10.82□□□□□ -0.68
VPS50-206ENST00000443443 ATP1B4Q9UN42 357 aaPredicted RBP10.82□□□□□ -0.68
VPS50-206ENST00000443443 MYSM1Q5VVJ2 828 aa10.81□□□□□ -0.68
VPS50-206ENST00000443443 PRR7Q8TB68 274 aa10.81□□□□□ -0.68
VPS50-206ENST00000443443 RSPH6AQ9H0K4 717 aa10.81□□□□□ -0.68
VPS50-206ENST00000443443 SPDYE5A6NIY4 337 aa10.8□□□□□ -0.68
VPS50-206ENST00000443443 TNFRSF10AO00220 468 aa10.8□□□□□ -0.68
VPS50-206ENST00000443443 GJA5P36382 358 aa10.8□□□□□ -0.68
VPS50-206ENST00000443443 TRIM67Q6ZTA4 783 aa10.8□□□□□ -0.68
VPS50-206ENST00000443443 POLR3EQ9NVU0 708 aa10.8□□□□□ -0.68
VPS50-206ENST00000443443 NUTM2BA6NNL0 878 aaPredicted RBP10.79□□□□□ -0.68
VPS50-206ENST00000443443 NUTM2EB1AL46 878 aaPredicted RBP10.79□□□□□ -0.68
VPS50-206ENST00000443443 TPRNQ4KMQ1 711 aa10.79□□□□□ -0.68
VPS50-206ENST00000443443 NUTM2DQ5VT03 806 aaPredicted RBP10.79□□□□□ -0.68
VPS50-206ENST00000443443 NUTM2AQ8IVF1 878 aaPredicted RBP10.79□□□□□ -0.68
VPS50-206ENST00000443443 NUDT12Q9BQG2 462 aa10.78□□□□□ -0.68
VPS50-206ENST00000443443 ZBTB3Q9H5J0 574 aa10.78□□□□□ -0.68
VPS50-206ENST00000443443 HRCP23327 699 aa10.77□□□□□ -0.69
VPS50-206ENST00000443443 CABLES1Q8TDN4 633 aa10.77□□□□□ -0.69
VPS50-206ENST00000443443 LIMD1Q9UGP4 676 aa10.77□□□□□ -0.69
VPS50-206ENST00000443443 TSC1Q92574 1164 aa10.76□□□□□ -0.69
VPS50-206ENST00000443443 FAM117AQ9C073 453 aa10.76□□□□□ -0.69
VPS50-206ENST00000443443 GDF9O60383 454 aa10.75□□□□□ -0.69
VPS50-206ENST00000443443 TRIM32Q13049 653 aa10.75□□□□□ -0.69
VPS50-206ENST00000443443 CLK2P49760 499 aaKnown RBP10.74□□□□□ -0.69
VPS50-206ENST00000443443 PRPF38BQ5VTL8 546 aaKnown RBP10.74□□□□□ -0.69
VPS50-206ENST00000443443 DDRGK1Q96HY6 314 aa10.74□□□□□ -0.69
VPS50-206ENST00000443443 CCNYL3P0C7X3 344 aa10.73□□□□□ -0.69
VPS50-206ENST00000443443 PRR20EP86478 221 aa10.73□□□□□ -0.69
VPS50-206ENST00000443443 PRR20CP86479 221 aa10.73□□□□□ -0.69
VPS50-206ENST00000443443 PRR20DP86480 221 aa10.73□□□□□ -0.69
VPS50-206ENST00000443443 PRR20BP86481 221 aa10.73□□□□□ -0.69
VPS50-206ENST00000443443 PRR20AP86496 221 aa10.73□□□□□ -0.69
VPS50-206ENST00000443443 NEUROD2Q15784 382 aa10.73□□□□□ -0.69
VPS50-206ENST00000443443 QPCTQ16769 361 aa10.73□□□□□ -0.69
VPS50-206ENST00000443443 CFAP99D6REC4 459 aa10.72□□□□□ -0.69
VPS50-206ENST00000443443 PTPRNQ16849 979 aa10.72□□□□□ -0.69
VPS50-206ENST00000443443 PTCRAQ6ISU1 281 aaPredicted RBP10.72□□□□□ -0.69
VPS50-206ENST00000443443 PKD2L1Q9P0L9 805 aa10.72□□□□□ -0.69
VPS50-206ENST00000443443 PKDCCQ504Y2 493 aa10.71□□□□□ -0.69
VPS50-206ENST00000443443 DESI1Q6ICB0 168 aa10.71□□□□□ -0.69
VPS50-206ENST00000443443 CYP4X1Q8N118 509 aa10.71□□□□□ -0.69
VPS50-206ENST00000443443 FAM187AA6NFU0 413 aa10.7□□□□□ -0.7
VPS50-206ENST00000443443 CTHP32929 405 aa10.7□□□□□ -0.7
VPS50-206ENST00000443443 EVA1BQ9NVM1 165 aa10.7□□□□□ -0.7
VPS50-206ENST00000443443 TTC24A2A3L6 582 aaPredicted RBP10.69□□□□□ -0.7
VPS50-206ENST00000443443 LILRB3O75022 631 aa10.69□□□□□ -0.7
VPS50-206ENST00000443443 SKIV2LQ15477 1246 aaKnown RBP10.69□□□□□ -0.7
VPS50-206ENST00000443443 TUSC1Q2TAM9 212 aa10.69□□□□□ -0.7
VPS50-206ENST00000443443 KCNH2Q12809 1159 aa10.68□□□□□ -0.7
VPS50-206ENST00000443443 RTL5Q5HYW3 569 aaPredicted RBP10.68□□□□□ -0.7
VPS50-206ENST00000443443 LYPD8Q6UX82 237 aa10.68□□□□□ -0.7
VPS50-206ENST00000443443 PROCA1Q8NCQ7 364 aaPredicted RBP10.67□□□□□ -0.7
VPS50-206ENST00000443443 PLEKHG3A1L390 1219 aa10.66□□□□□ -0.7
VPS50-206ENST00000443443 WNT7AO00755 349 aa10.66□□□□□ -0.7
VPS50-206ENST00000443443 DGAT1O75907 488 aa10.66□□□□□ -0.7
VPS50-206ENST00000443443 RC3H1Q5TC82 1133 aaKnown RBP10.66□□□□□ -0.7
VPS50-206ENST00000443443 IL27Q8NEV9 243 aa10.66□□□□□ -0.7
VPS50-206ENST00000443443 UNC93B1Q9H1C4 597 aa10.66□□□□□ -0.7
VPS50-206ENST00000443443 WNT7BP56706 349 aa10.65□□□□□ -0.7
VPS50-206ENST00000443443 SKOR1P84550 965 aa10.65□□□□□ -0.7
VPS50-206ENST00000443443 SH3D19Q5HYK7 790 aa10.65□□□□□ -0.7
VPS50-206ENST00000443443 ZNF787Q6DD87 383 aa10.65□□□□□ -0.7
VPS50-206ENST00000443443 HELBQ8NG08 1087 aaPredicted RBP10.65□□□□□ -0.7
VPS50-206ENST00000443443 MRGPRX2Q96LB1 330 aa10.65□□□□□ -0.7
VPS50-206ENST00000443443 LINC01559Q495D7 138 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms