RNA–Protein interactions for RNA: ENST00000442560.5

RFX3-206, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-206ENST00000442560 BRINP3Q76B58 766 aa10.79□□□□□ -0.68
RFX3-206ENST00000442560 DIP2AQ14689 1571 aa10.78□□□□□ -0.68
RFX3-206ENST00000442560 SPATA31A6Q5VVP1 1343 aa10.78□□□□□ -0.68
RFX3-206ENST00000442560 TRPM2O94759 1503 aa10.78□□□□□ -0.68
RFX3-206ENST00000442560 PHLPP1O60346 1717 aa10.78□□□□□ -0.68
RFX3-206ENST00000442560 METP08581 1390 aa10.77□□□□□ -0.68
RFX3-206ENST00000442560 NUTM2BA6NNL0 878 aaPredicted RBP10.77□□□□□ -0.69
RFX3-206ENST00000442560 NUTM2EB1AL46 878 aaPredicted RBP10.77□□□□□ -0.69
RFX3-206ENST00000442560 NUTM2AQ8IVF1 878 aaPredicted RBP10.77□□□□□ -0.69
RFX3-206ENST00000442560 LRP6O75581 1613 aa10.76□□□□□ -0.69
RFX3-206ENST00000442560 TRIM52Q96A61 297 aa10.76□□□□□ -0.69
RFX3-206ENST00000442560 COL16A1Q07092 1604 aaPredicted RBP10.76□□□□□ -0.69
RFX3-206ENST00000442560 ZNF772Q68DY9 489 aaPredicted RBP10.75□□□□□ -0.69
RFX3-206ENST00000442560 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.75□□□□□ -0.69
RFX3-206ENST00000442560 DDX17Q92841 729 aaKnown RBP10.74□□□□□ -0.69
RFX3-206ENST00000442560 MST1RQ04912 1400 aa10.74□□□□□ -0.69
RFX3-206ENST00000442560 NAIPQ13075 1403 aa10.74□□□□□ -0.69
RFX3-206ENST00000442560 AHDC1Q5TGY3 1603 aaPredicted RBP10.73□□□□□ -0.69
RFX3-206ENST00000442560 DCCP43146 1447 aa10.73□□□□□ -0.69
RFX3-206ENST00000442560 RRBP1Q9P2E9 1410 aaKnown RBP10.73□□□□□ -0.69
RFX3-206ENST00000442560 SETBP1Q9Y6X0 1596 aa10.73□□□□□ -0.69
RFX3-206ENST00000442560 NRXN3Q9Y4C0 1643 aa10.73□□□□□ -0.69
RFX3-206ENST00000442560 LRRC59Q96AG4 307 aaKnown RBP10.72□□□□□ -0.69
RFX3-206ENST00000442560 DCBLD2Q96PD2 775 aa10.72□□□□□ -0.69
RFX3-206ENST00000442560 PLSCR2Q9NRY7 297 aa10.72□□□□□ -0.69
RFX3-206ENST00000442560 VGFO15240 615 aaPredicted RBP10.71□□□□□ -0.69
RFX3-206ENST00000442560 RXRBP28702 533 aa10.71□□□□□ -0.69
RFX3-206ENST00000442560 NEXMIFQ5QGS0 1516 aa10.71□□□□□ -0.69
RFX3-206ENST00000442560 ASXL1Q8IXJ9 1541 aa10.71□□□□□ -0.69
RFX3-206ENST00000442560 SPHKAPQ2M3C7 1700 aa10.7□□□□□ -0.7
RFX3-206ENST00000442560 CLTCL1P53675 1640 aa10.7□□□□□ -0.7
RFX3-206ENST00000442560 SETD5Q9C0A6 1442 aa10.7□□□□□ -0.7
RFX3-206ENST00000442560 ADGRL3Q9HAR2 1447 aa10.7□□□□□ -0.7
RFX3-206ENST00000442560 AFF2P51816 1311 aa10.7□□□□□ -0.7
RFX3-206ENST00000442560 ZRANB1Q9UGI0 708 aa10.7□□□□□ -0.7
RFX3-206ENST00000442560 XRN1Q8IZH2 1706 aaKnown RBP10.7□□□□□ -0.7
RFX3-206ENST00000442560 RPGRIP1LQ68CZ1 1315 aa10.69□□□□□ -0.7
RFX3-206ENST00000442560 UPF1Q92900 1129 aaKnown RBP eCLIP10.69□□□□□ -0.7
RFX3-206ENST00000442560 C8orf37Q96NL8 207 aa10.69□□□□□ -0.7
RFX3-206ENST00000442560 ORAI2Q96SN7 254 aa10.69□□□□□ -0.7
RFX3-206ENST00000442560 ROBO2Q9HCK4 1378 aa10.68□□□□□ -0.7
RFX3-206ENST00000442560 C1orf167Q5SNV9 1468 aa10.68□□□□□ -0.7
RFX3-206ENST00000442560 PNPLA6Q8IY17 1366 aa10.67□□□□□ -0.7
RFX3-206ENST00000442560 ADAMTS2O95450 1211 aa10.67□□□□□ -0.7
RFX3-206ENST00000442560 SETD1AO15047 1707 aaKnown RBP10.67□□□□□ -0.7
RFX3-206ENST00000442560 HFM1A2PYH4 1435 aa10.67□□□□□ -0.7
RFX3-206ENST00000442560 SHPRHQ149N8 1683 aa10.66□□□□□ -0.7
RFX3-206ENST00000442560 QTRT2Q9H974 415 aaKnown RBP10.66□□□□□ -0.7
RFX3-206ENST00000442560 RGL3Q3MIN7 710 aa10.65□□□□□ -0.7
RFX3-206ENST00000442560 NGLY1Q96IV0 654 aa10.65□□□□□ -0.7
RFX3-206ENST00000442560 PTCH1Q13635 1447 aa10.65□□□□□ -0.7
RFX3-206ENST00000442560 SOS2Q07890 1332 aaPredicted RBP10.64□□□□□ -0.71
RFX3-206ENST00000442560 ADGRF5Q8IZF2 1346 aa10.64□□□□□ -0.71
RFX3-206ENST00000442560 RBM6P78332 1123 aaKnown RBP10.64□□□□□ -0.71
RFX3-206ENST00000442560 ESCO1Q5FWF5 840 aa10.63□□□□□ -0.71
RFX3-206ENST00000442560 STK26Q9P289 416 aa10.63□□□□□ -0.71
RFX3-206ENST00000442560 NHSL1Q5SYE7 1610 aa10.62□□□□□ -0.71
RFX3-206ENST00000442560 NALCNQ8IZF0 1738 aa10.62□□□□□ -0.71
RFX3-206ENST00000442560 NUTM2FA1L443 756 aa10.62□□□□□ -0.71
RFX3-206ENST00000442560 GALR2O43603 387 aaPredicted RBP10.62□□□□□ -0.71
RFX3-206ENST00000442560 WAPLQ7Z5K2 1190 aa10.62□□□□□ -0.71
RFX3-206ENST00000442560 MPHOSPH9Q99550 1183 aa10.62□□□□□ -0.71
RFX3-206ENST00000442560 CREBZFQ9NS37 354 aa10.62□□□□□ -0.71
RFX3-206ENST00000442560 CDK12Q9NYV4 1490 aaPredicted RBP10.61□□□□□ -0.71
RFX3-206ENST00000442560 TMEM132EQ6IEE7 984 aa10.61□□□□□ -0.71
RFX3-206ENST00000442560 USP21Q9UK80 565 aa10.61□□□□□ -0.71
RFX3-206ENST00000442560 KIF1BO60333 1816 aa10.61□□□□□ -0.71
RFX3-206ENST00000442560 CCDC144AA2RUR9 1427 aa10.6□□□□□ -0.71
RFX3-206ENST00000442560 RGS12O14924 1447 aa10.6□□□□□ -0.71
RFX3-206ENST00000442560 PRAG1Q86YV5 1406 aa10.6□□□□□ -0.71
RFX3-206ENST00000442560 XPCQ01831 940 aaPredicted RBP10.6□□□□□ -0.71
RFX3-206ENST00000442560 ZNF579Q8NAF0 562 aaKnown RBP10.6□□□□□ -0.71
RFX3-206ENST00000442560 NPHP3Q7Z494 1330 aa10.59□□□□□ -0.71
RFX3-206ENST00000442560 FOXO3O43524 673 aa10.59□□□□□ -0.71
RFX3-206ENST00000442560 TRPC5Q9UL62 973 aaPredicted RBP10.59□□□□□ -0.71
RFX3-206ENST00000442560 LRPPRCP42704 1394 aaKnown RBP10.58□□□□□ -0.72
RFX3-206ENST00000442560 PLEKHH1Q9ULM0 1364 aa10.58□□□□□ -0.72
RFX3-206ENST00000442560 FNBP4Q8N3X1 1017 aaPredicted RBP10.58□□□□□ -0.72
RFX3-206ENST00000442560 ANKRD30BQ9BXX2 1392 aa10.57□□□□□ -0.72
RFX3-206ENST00000442560 SPATA31E1Q6ZUB1 1445 aa10.57□□□□□ -0.72
RFX3-206ENST00000442560 ABCC11Q96J66 1382 aa10.56□□□□□ -0.72
RFX3-206ENST00000442560 PHF12Q96QT6 1004 aa10.56□□□□□ -0.72
RFX3-206ENST00000442560 TECPR2O15040 1411 aa10.55□□□□□ -0.72
RFX3-206ENST00000442560 PPLO60437 1756 aa10.54□□□□□ -0.72
RFX3-206ENST00000442560 POTEB2H3BUK9 544 aa10.54□□□□□ -0.72
RFX3-206ENST00000442560 CFAP70Q5T0N1 1121 aa10.54□□□□□ -0.72
RFX3-206ENST00000442560 CDC42BPGQ6DT37 1551 aa10.54□□□□□ -0.72
RFX3-206ENST00000442560 KRT28Q7Z3Y7 464 aa10.54□□□□□ -0.72
RFX3-206ENST00000442560 C14orf93Q9H972 538 aaKnown RBP10.54□□□□□ -0.72
RFX3-206ENST00000442560 LAMC1P11047 1609 aa10.54□□□□□ -0.72
RFX3-206ENST00000442560 MYOM2P54296 1465 aa10.54□□□□□ -0.72
RFX3-206ENST00000442560 PXDNQ92626 1479 aa10.54□□□□□ -0.72
RFX3-206ENST00000442560 PIK3C2GO75747 1445 aa10.53□□□□□ -0.72
RFX3-206ENST00000442560 ATRNO75882 1429 aa10.53□□□□□ -0.72
RFX3-206ENST00000442560 YTHDC2Q9H6S0 1430 aaKnown RBP10.53□□□□□ -0.72
RFX3-206ENST00000442560 PLEKHG5O94827 1062 aa10.53□□□□□ -0.72
RFX3-206ENST00000442560 CLCN6P51797 869 aa10.53□□□□□ -0.72
RFX3-206ENST00000442560 SIRT1Q96EB6 747 aa10.53□□□□□ -0.72
RFX3-206ENST00000442560 SPATA31A3Q5VYP0 1347 aa10.53□□□□□ -0.72
RFX3-206ENST00000442560 ATAD2Q6PL18 1390 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms