RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 MINK1Q8N4C8 1332 aaPredicted RBP8.07□□□□□ -1.12
VPS50-205ENST00000441602 SAFB2Q14151 953 aaKnown RBP eCLIP8.06□□□□□ -1.12
VPS50-205ENST00000441602 CCDC184Q52MB2 194 aa8.06□□□□□ -1.12
VPS50-205ENST00000441602 PNISRQ8TF01 805 aaKnown RBP8.06□□□□□ -1.12
VPS50-205ENST00000441602 AMER1Q5JTC6 1135 aaPredicted RBP8.06□□□□□ -1.12
VPS50-205ENST00000441602 CEBPAP49715 358 aaPredicted RBP8.06□□□□□ -1.12
VPS50-205ENST00000441602 MORC1Q86VD1 984 aa8.06□□□□□ -1.12
VPS50-205ENST00000441602 ANKRD36BQ8N2N9 1353 aa8.06□□□□□ -1.12
VPS50-205ENST00000441602 FAM135BQ49AJ0 1406 aa8.06□□□□□ -1.12
VPS50-205ENST00000441602 PTPRMP28827 1452 aa8.06□□□□□ -1.12
VPS50-205ENST00000441602 UBR1Q8IWV7 1749 aa8.05□□□□□ -1.12
VPS50-205ENST00000441602 CFAP53Q96M91 514 aa8.05□□□□□ -1.12
VPS50-205ENST00000441602 NSD3Q9BZ95 1437 aa8.05□□□□□ -1.12
VPS50-205ENST00000441602 PPP2R1AP30153 589 aa8.05□□□□□ -1.12
VPS50-205ENST00000441602 C3P01024 1663 aa8.05□□□□□ -1.12
VPS50-205ENST00000441602 MYOM1P52179 1685 aa8.04□□□□□ -1.12
VPS50-205ENST00000441602 CABP2Q9NPB3 220 aa8.04□□□□□ -1.12
VPS50-205ENST00000441602 TULP4Q9NRJ4 1543 aa8.04□□□□□ -1.12
VPS50-205ENST00000441602 TBX22Q9Y458 520 aa8.04□□□□□ -1.12
VPS50-205ENST00000441602 SLIT1O75093 1534 aa8.04□□□□□ -1.12
VPS50-205ENST00000441602 CDK19Q9BWU1 502 aa8.04□□□□□ -1.12
VPS50-205ENST00000441602 SLC12A5Q9H2X9 1139 aa8.04□□□□□ -1.12
VPS50-205ENST00000441602 ARHGAP23Q9P227 1491 aa8.03□□□□□ -1.12
VPS50-205ENST00000441602 TECPR2O15040 1411 aa8.03□□□□□ -1.12
VPS50-205ENST00000441602 DIP2AQ14689 1571 aa8.03□□□□□ -1.12
VPS50-205ENST00000441602 PDE3BQ13370 1112 aa8.03□□□□□ -1.12
VPS50-205ENST00000441602 RIMS1Q86UR5 1692 aaKnown RBP8.02□□□□□ -1.13
VPS50-205ENST00000441602 NGEFQ8N5V2 710 aa8.02□□□□□ -1.13
VPS50-205ENST00000441602 USP32Q8NFA0 1604 aa8.02□□□□□ -1.13
VPS50-205ENST00000441602 KNDC1Q76NI1 1749 aa8.02□□□□□ -1.13
VPS50-205ENST00000441602 ANKLE2Q86XL3 938 aa8.02□□□□□ -1.13
VPS50-205ENST00000441602 WASLO00401 505 aaPredicted RBP8.01□□□□□ -1.13
VPS50-205ENST00000441602 CPS1P31327 1500 aa8.01□□□□□ -1.13
VPS50-205ENST00000441602 METP08581 1390 aa8.01□□□□□ -1.13
VPS50-205ENST00000441602 PIK3R4Q99570 1358 aa8.01□□□□□ -1.13
VPS50-205ENST00000441602 CARD14Q9BXL6 1004 aa8.01□□□□□ -1.13
VPS50-205ENST00000441602 CEP170BQ9Y4F5 1589 aaPredicted RBP8□□□□□ -1.13
VPS50-205ENST00000441602 ADAMTS13Q76LX8 1427 aa8□□□□□ -1.13
VPS50-205ENST00000441602 ATP7BP35670 1465 aa8□□□□□ -1.13
VPS50-205ENST00000441602 NRXN3Q9Y4C0 1643 aa8□□□□□ -1.13
VPS50-205ENST00000441602 LTKP29376 864 aa8□□□□□ -1.13
VPS50-205ENST00000441602 WAPLQ7Z5K2 1190 aa8□□□□□ -1.13
VPS50-205ENST00000441602 NUDCQ9Y266 331 aa7.99□□□□□ -1.13
VPS50-205ENST00000441602 SETD1AO15047 1707 aaKnown RBP7.99□□□□□ -1.13
VPS50-205ENST00000441602 POLR3AO14802 1390 aaPredicted RBP7.99□□□□□ -1.13
VPS50-205ENST00000441602 SMG6Q86US8 1419 aaKnown RBP7.99□□□□□ -1.13
VPS50-205ENST00000441602 ADAMTSL3P82987 1691 aa7.99□□□□□ -1.13
VPS50-205ENST00000441602 ERICH6BQ5W0A0 696 aa7.99□□□□□ -1.13
VPS50-205ENST00000441602 ZNF692Q9BU19 519 aaPredicted RBP7.99□□□□□ -1.13
VPS50-205ENST00000441602 A0A1W2PP64 1363 aa7.99□□□□□ -1.13
VPS50-205ENST00000441602 BLMP54132 1417 aaPredicted RBP7.98□□□□□ -1.13
VPS50-205ENST00000441602 SLC26A8Q96RN1 970 aa7.98□□□□□ -1.13
VPS50-205ENST00000441602 CCDC61Q9Y6R9 512 aa7.98□□□□□ -1.13
VPS50-205ENST00000441602 NUDT16Q96DE0 195 aaKnown RBP7.98□□□□□ -1.13
VPS50-205ENST00000441602 CABP1Q9NZU7 370 aa7.98□□□□□ -1.13
VPS50-205ENST00000441602 AMOTL2Q9Y2J4 779 aa7.98□□□□□ -1.13
VPS50-205ENST00000441602 PLEKHH1Q9ULM0 1364 aa7.98□□□□□ -1.13
VPS50-205ENST00000441602 PTCH1Q13635 1447 aa7.98□□□□□ -1.13
VPS50-205ENST00000441602 MED14O60244 1454 aa7.98□□□□□ -1.13
VPS50-205ENST00000441602 FKBP8Q14318 412 aa7.97□□□□□ -1.13
VPS50-205ENST00000441602 PNNQ9H307 717 aaKnown RBP7.97□□□□□ -1.13
VPS50-205ENST00000441602 PPIP5K1Q6PFW1 1433 aa7.97□□□□□ -1.13
VPS50-205ENST00000441602 SETD1BQ9UPS6 1966 aaKnown RBP7.97□□□□□ -1.13
VPS50-205ENST00000441602 ZNF142P52746 1687 aaPredicted RBP7.96□□□□□ -1.13
VPS50-205ENST00000441602 EDC4Q6P2E9 1401 aaKnown RBP7.96□□□□□ -1.14
VPS50-205ENST00000441602 NEFMP07197 916 aa7.96□□□□□ -1.14
VPS50-205ENST00000441602 ROBO2Q9HCK4 1378 aa7.96□□□□□ -1.14
VPS50-205ENST00000441602 ADGRB2O60241 1585 aa7.96□□□□□ -1.14
VPS50-205ENST00000441602 TNNT2P45379 298 aaPredicted RBP7.95□□□□□ -1.14
VPS50-205ENST00000441602 ADAMTS8Q9UP79 889 aa7.95□□□□□ -1.14
VPS50-205ENST00000441602 SUPT16HQ9Y5B9 1047 aaKnown RBP7.95□□□□□ -1.14
VPS50-205ENST00000441602 MTHFSP49914 203 aa7.94□□□□□ -1.14
VPS50-205ENST00000441602 COG3Q96JB2 828 aa7.94□□□□□ -1.14
VPS50-205ENST00000441602 GGNBP2Q9H3C7 697 aa7.94□□□□□ -1.14
VPS50-205ENST00000441602 CDC42BPGQ6DT37 1551 aa7.94□□□□□ -1.14
VPS50-205ENST00000441602 NPHP4O75161 1426 aaPredicted RBP7.93□□□□□ -1.14
VPS50-205ENST00000441602 PLEKHG3A1L390 1219 aa7.93□□□□□ -1.14
VPS50-205ENST00000441602 FYB1O15117 783 aa7.93□□□□□ -1.14
VPS50-205ENST00000441602 ANKARQ7Z5J8 1434 aa7.93□□□□□ -1.14
VPS50-205ENST00000441602 RUNDC1Q96C34 613 aa7.93□□□□□ -1.14
VPS50-205ENST00000441602 PHF23Q9BUL5 403 aaPredicted RBP7.93□□□□□ -1.14
VPS50-205ENST00000441602 SALL2Q9Y467 1007 aaPredicted RBP7.93□□□□□ -1.14
VPS50-205ENST00000441602 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS50-205ENST00000441602 PTPRUQ92729 1446 aa7.92□□□□□ -1.14
VPS50-205ENST00000441602 GOLGA2Q08379 1002 aa7.92□□□□□ -1.14
VPS50-205ENST00000441602 CPSF1Q10570 1443 aaKnown RBP7.92□□□□□ -1.14
VPS50-205ENST00000441602 TTC21AQ8NDW8 1320 aa7.92□□□□□ -1.14
VPS50-205ENST00000441602 MAPK8IP3Q9UPT6 1336 aa7.92□□□□□ -1.14
VPS50-205ENST00000441602 NCBP3Q53F19 620 aaKnown RBP7.92□□□□□ -1.14
VPS50-205ENST00000441602 NGDNQ8NEJ9 315 aaKnown RBP7.92□□□□□ -1.14
VPS50-205ENST00000441602 CD163L1Q9NR16 1453 aa7.92□□□□□ -1.14
VPS50-205ENST00000441602 ANKRD26Q9UPS8 1709 aa7.92□□□□□ -1.14
VPS50-205ENST00000441602 DIAPH1O60610 1272 aaKnown RBP7.91□□□□□ -1.14
VPS50-205ENST00000441602 U2AF1L5P0DN76 240 aaPredicted RBP7.91□□□□□ -1.14
VPS50-205ENST00000441602 U2AF1Q01081 240 aaKnown RBP eCLIP7.91□□□□□ -1.14
VPS50-205ENST00000441602 C14orf37Q86TY3 774 aa7.91□□□□□ -1.14
VPS50-205ENST00000441602 XRN1Q8IZH2 1706 aaKnown RBP7.91□□□□□ -1.14
VPS50-205ENST00000441602 KIF20BQ96Q89 1820 aa7.91□□□□□ -1.14
VPS50-205ENST00000441602 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.91□□□□□ -1.14
VPS50-205ENST00000441602 ITSN1Q15811 1721 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms