RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 PLEKHH1Q9ULM0 1364 aa28.6■■■□□ 2.17
PTPRF-207ENST00000436724 ABCC11Q96J66 1382 aa28.59■■■□□ 2.17
PTPRF-207ENST00000436724 SRPK2P78362 688 aaKnown RBP28.59■■■□□ 2.17
PTPRF-207ENST00000436724 ADAMTSL3P82987 1691 aa28.58■■■□□ 2.17
PTPRF-207ENST00000436724 ADAMTS13Q76LX8 1427 aa28.58■■■□□ 2.17
PTPRF-207ENST00000436724 DLC1Q96QB1 1528 aa28.58■■■□□ 2.17
PTPRF-207ENST00000436724 PLEKHG1Q9ULL1 1385 aa28.56■■■□□ 2.16
PTPRF-207ENST00000436724 PUS7Q96PZ0 661 aaKnown RBP28.56■■■□□ 2.16
PTPRF-207ENST00000436724 EID1Q9Y6B2 187 aa28.56■■■□□ 2.16
PTPRF-207ENST00000436724 SLIT1O75093 1534 aa28.56■■■□□ 2.16
PTPRF-207ENST00000436724 ARHGAP23Q9P227 1491 aa28.55■■■□□ 2.16
PTPRF-207ENST00000436724 THEMISQ8N1K5 641 aaPredicted RBP28.55■■■□□ 2.16
PTPRF-207ENST00000436724 SLC26A8Q96RN1 970 aa28.54■■■□□ 2.16
PTPRF-207ENST00000436724 NPC1L1Q9UHC9 1359 aa28.53■■■□□ 2.16
PTPRF-207ENST00000436724 NSD3Q9BZ95 1437 aa28.53■■■□□ 2.16
PTPRF-207ENST00000436724 SUPT16HQ9Y5B9 1047 aaKnown RBP28.52■■■□□ 2.16
PTPRF-207ENST00000436724 CDK19Q9BWU1 502 aa28.51■■■□□ 2.16
PTPRF-207ENST00000436724 PPP2R1AP30153 589 aa28.51■■■□□ 2.15
PTPRF-207ENST00000436724 CEP170BQ9Y4F5 1589 aaPredicted RBP28.51■■■□□ 2.15
PTPRF-207ENST00000436724 SENP3-EIF4A1A0A087X0R7 540 aa28.5■■■□□ 2.15
PTPRF-207ENST00000436724 ANKRD36BQ8N2N9 1353 aa28.47■■■□□ 2.15
PTPRF-207ENST00000436724 KNDC1Q76NI1 1749 aa28.47■■■□□ 2.15
PTPRF-207ENST00000436724 TECPR2O15040 1411 aa28.46■■■□□ 2.15
PTPRF-207ENST00000436724 MED14O60244 1454 aa28.46■■■□□ 2.15
PTPRF-207ENST00000436724 ATAD2Q6PL18 1390 aa28.46■■■□□ 2.15
PTPRF-207ENST00000436724 CPS1P31327 1500 aa28.44■■■□□ 2.14
PTPRF-207ENST00000436724 ROBO2Q9HCK4 1378 aa28.44■■■□□ 2.14
PTPRF-207ENST00000436724 ZBED9Q6R2W3 1325 aa28.44■■■□□ 2.14
PTPRF-207ENST00000436724 A0A1W2PP64 1363 aa28.43■■■□□ 2.14
PTPRF-207ENST00000436724 FAM135BQ49AJ0 1406 aa28.43■■■□□ 2.14
PTPRF-207ENST00000436724 PTPRUQ92729 1446 aa28.42■■■□□ 2.14
PTPRF-207ENST00000436724 SIRT1Q96EB6 747 aa28.4■■■□□ 2.14
PTPRF-207ENST00000436724 NINLQ9Y2I6 1382 aa28.4■■■□□ 2.14
PTPRF-207ENST00000436724 CABP1Q9NZU7 370 aa28.39■■■□□ 2.14
PTPRF-207ENST00000436724 CD163L1Q9NR16 1453 aa28.38■■■□□ 2.13
PTPRF-207ENST00000436724 CGNL1Q0VF96 1302 aa28.38■■■□□ 2.13
PTPRF-207ENST00000436724 WASLO00401 505 aaPredicted RBP28.38■■■□□ 2.13
PTPRF-207ENST00000436724 TBX22Q9Y458 520 aa28.38■■■□□ 2.13
PTPRF-207ENST00000436724 USP32Q8NFA0 1604 aa28.36■■■□□ 2.13
PTPRF-207ENST00000436724 TNNT2P45379 298 aaPredicted RBP28.35■■■□□ 2.13
PTPRF-207ENST00000436724 ZNF142P52746 1687 aaPredicted RBP28.35■■■□□ 2.13
PTPRF-207ENST00000436724 SETD1BQ9UPS6 1966 aaKnown RBP28.35■■■□□ 2.13
PTPRF-207ENST00000436724 MORC1Q86VD1 984 aa28.35■■■□□ 2.13
PTPRF-207ENST00000436724 AMOTL2Q9Y2J4 779 aa28.35■■■□□ 2.13
PTPRF-207ENST00000436724 TERF2IPQ9NYB0 399 aa28.34■■■□□ 2.13
PTPRF-207ENST00000436724 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.32■■■□□ 2.12
PTPRF-207ENST00000436724 NCKAP5LQ9HCH0 1330 aa28.31■■■□□ 2.12
PTPRF-207ENST00000436724 ADAMTS8Q9UP79 889 aa28.3■■■□□ 2.12
PTPRF-207ENST00000436724 DIP2AQ14689 1571 aa28.29■■■□□ 2.12
PTPRF-207ENST00000436724 ANKLE2Q86XL3 938 aa28.29■■■□□ 2.12
PTPRF-207ENST00000436724 HDGFL2Q7Z4V5 671 aaPredicted RBP28.28■■■□□ 2.12
PTPRF-207ENST00000436724 NUDT16Q96DE0 195 aaKnown RBP28.28■■■□□ 2.12
PTPRF-207ENST00000436724 GGNBP2Q9H3C7 697 aa28.27■■■□□ 2.12
PTPRF-207ENST00000436724 PPIP5K1Q6PFW1 1433 aa28.27■■■□□ 2.12
PTPRF-207ENST00000436724 SALL2Q9Y467 1007 aaPredicted RBP28.26■■■□□ 2.11
PTPRF-207ENST00000436724 NSD2O96028 1365 aa28.25■■■□□ 2.11
PTPRF-207ENST00000436724 WDR43Q15061 677 aaKnown RBP eCLIP28.25■■■□□ 2.114e-6■□□□□ 8.9
PTPRF-207ENST00000436724 PRR36Q9H6K5 1346 aa28.24■■■□□ 2.11
PTPRF-207ENST00000436724 BLMP54132 1417 aaPredicted RBP28.24■■■□□ 2.11
PTPRF-207ENST00000436724 FYB1O15117 783 aa28.24■■■□□ 2.11
PTPRF-207ENST00000436724 NUTM2FA1L443 756 aa28.23■■■□□ 2.11
PTPRF-207ENST00000436724 ATP7BP35670 1465 aa28.23■■■□□ 2.11
PTPRF-207ENST00000436724 KCNA6P17658 529 aa28.22■■■□□ 2.11
PTPRF-207ENST00000436724 CCDC61Q9Y6R9 512 aa28.22■■■□□ 2.11
PTPRF-207ENST00000436724 PTCH1Q13635 1447 aa28.22■■■□□ 2.11
PTPRF-207ENST00000436724 ADGRB2O60241 1585 aa28.22■■■□□ 2.11
PTPRF-207ENST00000436724 XRN1Q8IZH2 1706 aaKnown RBP28.21■■■□□ 2.11
PTPRF-207ENST00000436724 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.2■■■□□ 2.11
PTPRF-207ENST00000436724 MTHFSP49914 203 aa28.18■■■□□ 2.1
PTPRF-207ENST00000436724 INSRP06213 1382 aa28.18■■■□□ 2.1
PTPRF-207ENST00000436724 CPSF1Q10570 1443 aaKnown RBP28.18■■■□□ 2.1
PTPRF-207ENST00000436724 POLR3AO14802 1390 aaPredicted RBP28.17■■■□□ 2.1
PTPRF-207ENST00000436724 PIK3R4Q99570 1358 aa28.16■■■□□ 2.1
PTPRF-207ENST00000436724 CDC42BPGQ6DT37 1551 aa28.14■■■□□ 2.1
PTPRF-207ENST00000436724 ANKRD26Q9UPS8 1709 aa28.13■■■□□ 2.09
PTPRF-207ENST00000436724 FKBP8Q14318 412 aa28.13■■■□□ 2.09
PTPRF-207ENST00000436724 KIF20BQ96Q89 1820 aa28.13■■■□□ 2.09
PTPRF-207ENST00000436724 CCDC146Q8IYE0 955 aa28.11■■■□□ 2.09
PTPRF-207ENST00000436724 SMG6Q86US8 1419 aaKnown RBP28.11■■■□□ 2.09
PTPRF-207ENST00000436724 CHD2O14647 1828 aaKnown RBP28.1■■■□□ 2.09
PTPRF-207ENST00000436724 NPHP4O75161 1426 aaPredicted RBP28.1■■■□□ 2.09
PTPRF-207ENST00000436724 EDC4Q6P2E9 1401 aaKnown RBP28.1■■■□□ 2.09
PTPRF-207ENST00000436724 SHPRHQ149N8 1683 aa28.09■■■□□ 2.09
PTPRF-207ENST00000436724 RBM33Q96EV2 1170 aaKnown RBP28.09■■■□□ 2.09
PTPRF-207ENST00000436724 NUDCQ9Y266 331 aa28.09■■■□□ 2.09
PTPRF-207ENST00000436724 TOPAZ1Q8N9V7 1692 aa28.08■■■□□ 2.09
PTPRF-207ENST00000436724 NME9Q86XW9 330 aa28.08■■■□□ 2.09
PTPRF-207ENST00000436724 MON2Q7Z3U7 1717 aa28.08■■■□□ 2.09
PTPRF-207ENST00000436724 AKAP12Q02952 1782 aa28.07■■■□□ 2.08
PTPRF-207ENST00000436724 ITSN1Q15811 1721 aa28.07■■■□□ 2.08
PTPRF-207ENST00000436724 NKTRP30414 1462 aaKnown RBP28.07■■■□□ 2.08
PTPRF-207ENST00000436724 NEFLP07196 543 aa28.06■■■□□ 2.08
PTPRF-207ENST00000436724 FBLN1P23142 703 aa28.06■■■□□ 2.08
PTPRF-207ENST00000436724 ZRANB1Q9UGI0 708 aa28.06■■■□□ 2.08
PTPRF-207ENST00000436724 ACEP12821 1306 aa28.06■■■□□ 2.08
PTPRF-207ENST00000436724 CFAP53Q96M91 514 aa28.05■■■□□ 2.08
PTPRF-207ENST00000436724 CDCA7LQ96GN5 454 aa28.04■■■□□ 2.08
PTPRF-207ENST00000436724 RGPD8O14715 1765 aaPredicted RBP28.04■■■□□ 2.08
PTPRF-207ENST00000436724 PLEKHG3A1L390 1219 aa28.03■■■□□ 2.08
PTPRF-207ENST00000436724 ZNF692Q9BU19 519 aaPredicted RBP28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms