RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 IQSEC2Q5JU85 1478 aa17.81■□□□□ 0.44
COL6A3-207ENST00000433762 AAMPQ13685 434 aa17.81■□□□□ 0.44
COL6A3-207ENST00000433762 BCL11AQ9H165 835 aa17.81■□□□□ 0.44
COL6A3-207ENST00000433762 USP35Q9P2H5 1018 aa17.81■□□□□ 0.44
COL6A3-207ENST00000433762 NEXMIFQ5QGS0 1516 aa17.81■□□□□ 0.44
COL6A3-207ENST00000433762 SIGLEC1Q9BZZ2 1709 aa17.8■□□□□ 0.44
COL6A3-207ENST00000433762 NSD3Q9BZ95 1437 aa17.8■□□□□ 0.44
COL6A3-207ENST00000433762 PDE3AQ14432 1141 aa17.8■□□□□ 0.44
COL6A3-207ENST00000433762 C20orf194Q5TEA3 1177 aa17.8■□□□□ 0.44
COL6A3-207ENST00000433762 APAF1O14727 1248 aa17.79■□□□□ 0.44
COL6A3-207ENST00000433762 TSPOAP1O95153 1857 aa17.79■□□□□ 0.44
COL6A3-207ENST00000433762 KIF13AQ9H1H9 1805 aa17.79■□□□□ 0.44
COL6A3-207ENST00000433762 DIP2CQ9Y2E4 1556 aa17.78■□□□□ 0.44
COL6A3-207ENST00000433762 CGNL1Q0VF96 1302 aa17.78■□□□□ 0.44
COL6A3-207ENST00000433762 RTL5Q5HYW3 569 aaPredicted RBP17.77■□□□□ 0.44
COL6A3-207ENST00000433762 DEKP35659 375 aaKnown RBP17.76■□□□□ 0.43
COL6A3-207ENST00000433762 RICTORQ6R327 1708 aa17.76■□□□□ 0.43
COL6A3-207ENST00000433762 PPM1GO15355 546 aaPredicted RBP17.76■□□□□ 0.43
COL6A3-207ENST00000433762 CCDC27Q2M243 656 aa17.76■□□□□ 0.43
COL6A3-207ENST00000433762 PHF23Q9BUL5 403 aaPredicted RBP17.76■□□□□ 0.43
COL6A3-207ENST00000433762 CFAP65Q6ZU64 1925 aaKnown RBP17.75■□□□□ 0.43
COL6A3-207ENST00000433762 ZMYM3Q14202 1370 aa17.75■□□□□ 0.43
COL6A3-207ENST00000433762 ANKRD36BQ8N2N9 1353 aa17.75■□□□□ 0.43
COL6A3-207ENST00000433762 ANKRD26Q9UPS8 1709 aa17.74■□□□□ 0.43
COL6A3-207ENST00000433762 ADGRB2O60241 1585 aa17.74■□□□□ 0.43
COL6A3-207ENST00000433762 FAM161AQ3B820 660 aa17.74■□□□□ 0.43
COL6A3-207ENST00000433762 CCDC146Q8IYE0 955 aa17.74■□□□□ 0.43
COL6A3-207ENST00000433762 TULP4Q9NRJ4 1543 aa17.74■□□□□ 0.43
COL6A3-207ENST00000433762 CLTCQ00610 1675 aaKnown RBP17.74■□□□□ 0.43
COL6A3-207ENST00000433762 RUNDC1Q96C34 613 aa17.74■□□□□ 0.43
COL6A3-207ENST00000433762 VGFO15240 615 aaPredicted RBP17.73■□□□□ 0.43
COL6A3-207ENST00000433762 MORC1Q86VD1 984 aa17.73■□□□□ 0.43
COL6A3-207ENST00000433762 WDR63Q8IWG1 891 aa17.73■□□□□ 0.43
COL6A3-207ENST00000433762 WWC1Q8IX03 1113 aa17.73■□□□□ 0.43
COL6A3-207ENST00000433762 EVC2Q86UK5 1308 aa17.72■□□□□ 0.43
COL6A3-207ENST00000433762 SPINK5Q9NQ38 1064 aaPredicted RBP17.72■□□□□ 0.43
COL6A3-207ENST00000433762 MED14O60244 1454 aa17.71■□□□□ 0.43
COL6A3-207ENST00000433762 CFAP53Q96M91 514 aa17.71■□□□□ 0.43
COL6A3-207ENST00000433762 RAPGEF3O95398 923 aa17.7■□□□□ 0.42
COL6A3-207ENST00000433762 NPM2Q86SE8 214 aaKnown RBP17.7■□□□□ 0.42
COL6A3-207ENST00000433762 NBR1Q14596 966 aa17.69■□□□□ 0.42
COL6A3-207ENST00000433762 PREX1Q8TCU6 1659 aa17.69■□□□□ 0.42
COL6A3-207ENST00000433762 TRAK1Q9UPV9 953 aa17.69■□□□□ 0.42
COL6A3-207ENST00000433762 C8orf34Q49A92 452 aa17.68■□□□□ 0.42
COL6A3-207ENST00000433762 SLC52A1Q9NWF4 448 aa17.68■□□□□ 0.42
COL6A3-207ENST00000433762 TMEM131LA2VDJ0 1609 aa17.67■□□□□ 0.42
COL6A3-207ENST00000433762 CT47B1P0C2W7 299 aaPredicted RBP17.67■□□□□ 0.42
COL6A3-207ENST00000433762 CHGAP10645 457 aaKnown RBP17.67■□□□□ 0.42
COL6A3-207ENST00000433762 MAPK8IP3Q9UPT6 1336 aa17.67■□□□□ 0.42
COL6A3-207ENST00000433762 GGT6Q6P531 493 aa17.66■□□□□ 0.42
COL6A3-207ENST00000433762 SLC12A5Q9H2X9 1139 aa17.66■□□□□ 0.42
COL6A3-207ENST00000433762 ABCC11Q96J66 1382 aa17.66■□□□□ 0.42
COL6A3-207ENST00000433762 TRHP20396 242 aaPredicted RBP17.66■□□□□ 0.42
COL6A3-207ENST00000433762 BCAR3O75815 825 aa17.65■□□□□ 0.42
COL6A3-207ENST00000433762 CLUAP1Q96AJ1 413 aa17.64■□□□□ 0.41
COL6A3-207ENST00000433762 MYO5BQ9ULV0 1848 aa17.64■□□□□ 0.41
COL6A3-207ENST00000433762 ATAD2Q6PL18 1390 aa17.63■□□□□ 0.41
COL6A3-207ENST00000433762 DMRT2Q9Y5R5 561 aa17.63■□□□□ 0.41
COL6A3-207ENST00000433762 REREQ9P2R6 1566 aa17.63■□□□□ 0.41
COL6A3-207ENST00000433762 TCP11L2Q8N4U5 519 aa17.62■□□□□ 0.41
COL6A3-207ENST00000433762 PTPRMP28827 1452 aa17.62■□□□□ 0.41
COL6A3-207ENST00000433762 MYH16Q9H6N6 1097 aa17.62■□□□□ 0.41
COL6A3-207ENST00000433762 RARSP54136 660 aaKnown RBP17.61■□□□□ 0.41
COL6A3-207ENST00000433762 PMFBP1Q8TBY8 1022 aa17.61■□□□□ 0.41
COL6A3-207ENST00000433762 COL3A1P02461 1466 aaPredicted RBP17.61■□□□□ 0.41
COL6A3-207ENST00000433762 MTHFSP49914 203 aa17.61■□□□□ 0.41
COL6A3-207ENST00000433762 TMEM132EQ6IEE7 984 aa17.6■□□□□ 0.41
COL6A3-207ENST00000433762 CDC42BPGQ6DT37 1551 aa17.59■□□□□ 0.41
COL6A3-207ENST00000433762 KIF20BQ96Q89 1820 aa17.59■□□□□ 0.41
COL6A3-207ENST00000433762 DLC1Q96QB1 1528 aa17.58■□□□□ 0.4
COL6A3-207ENST00000433762 CANXP27824 592 aaKnown RBP17.58■□□□□ 0.4
COL6A3-207ENST00000433762 NEFMP07197 916 aa17.57■□□□□ 0.4
COL6A3-207ENST00000433762 IL16Q14005 1332 aa17.57■□□□□ 0.4
COL6A3-207ENST00000433762 SKAP1Q86WV1 359 aa17.57■□□□□ 0.4
COL6A3-207ENST00000433762 DAXXQ9UER7 740 aaPredicted RBP17.57■□□□□ 0.4
COL6A3-207ENST00000433762 A0A1W2PP64 1363 aa17.56■□□□□ 0.4
COL6A3-207ENST00000433762 NLRP1Q9C000 1473 aa17.56■□□□□ 0.4
COL6A3-207ENST00000433762 IDI1Q13907 227 aa17.55■□□□□ 0.4
COL6A3-207ENST00000433762 AGLP35573 1532 aa17.55■□□□□ 0.4
COL6A3-207ENST00000433762 IGHDP01880 384 aa17.55■□□□□ 0.4
COL6A3-207ENST00000433762 PPP6R1Q9UPN7 881 aa17.55■□□□□ 0.4
COL6A3-207ENST00000433762 YTHDC2Q9H6S0 1430 aaKnown RBP17.55■□□□□ 0.4
COL6A3-207ENST00000433762 TERF2IPQ9NYB0 399 aa17.54■□□□□ 0.4
COL6A3-207ENST00000433762 YEATS2Q9ULM3 1422 aa17.54■□□□□ 0.4
COL6A3-207ENST00000433762 CD163L1Q9NR16 1453 aa17.54■□□□□ 0.4
COL6A3-207ENST00000433762 ALKQ9UM73 1620 aa17.54■□□□□ 0.4
COL6A3-207ENST00000433762 PNNQ9H307 717 aaKnown RBP17.53■□□□□ 0.4
COL6A3-207ENST00000433762 RGS3P49796 1198 aa17.53■□□□□ 0.4
COL6A3-207ENST00000433762 COG6Q9Y2V7 657 aa17.53■□□□□ 0.4
COL6A3-207ENST00000433762 PNPLA6Q8IY17 1366 aa17.53■□□□□ 0.4
COL6A3-207ENST00000433762 PANK1Q8TE04 598 aa17.52■□□□□ 0.4
COL6A3-207ENST00000433762 LAS1LQ9Y4W2 734 aaKnown RBP17.52■□□□□ 0.4
COL6A3-207ENST00000433762 ARHGEF40Q8TER5 1519 aa17.52■□□□□ 0.39
COL6A3-207ENST00000433762 PLEKHF1Q96S99 279 aa17.51■□□□□ 0.39
COL6A3-207ENST00000433762 ATP7BP35670 1465 aa17.5■□□□□ 0.39
COL6A3-207ENST00000433762 SETD1AO15047 1707 aaKnown RBP17.5■□□□□ 0.39
COL6A3-207ENST00000433762 RWDD1Q9H446 243 aaPredicted RBP17.5■□□□□ 0.39
COL6A3-207ENST00000433762 U2AF1L5P0DN76 240 aaPredicted RBP17.5■□□□□ 0.39
COL6A3-207ENST00000433762 TNNT2P45379 298 aaPredicted RBP17.5■□□□□ 0.39
COL6A3-207ENST00000433762 U2AF1Q01081 240 aaKnown RBP eCLIP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms