RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 RUNDC1Q96C34 613 aa14.62□□□□□ -0.07
USP4-205ENST00000431357 ADGRB1O14514 1584 aa14.62□□□□□ -0.07
USP4-205ENST00000431357 NPATQ14207 1427 aa14.61□□□□□ -0.07
USP4-205ENST00000431357 QRICH2Q9H0J4 1663 aa14.61□□□□□ -0.07
USP4-205ENST00000431357 CHGAP10645 457 aaKnown RBP14.61□□□□□ -0.07
USP4-205ENST00000431357 LAS1LQ9Y4W2 734 aaKnown RBP14.61□□□□□ -0.07
USP4-205ENST00000431357 POGZQ7Z3K3 1410 aa14.61□□□□□ -0.07
USP4-205ENST00000431357 NPM1P06748 294 aaKnown RBP eCLIP14.6□□□□□ -0.07
USP4-205ENST00000431357 TRAK1Q9UPV9 953 aa14.6□□□□□ -0.07
USP4-205ENST00000431357 SHPRHQ149N8 1683 aa14.59□□□□□ -0.07
USP4-205ENST00000431357 WDR63Q8IWG1 891 aa14.59□□□□□ -0.07
USP4-205ENST00000431357 CFAP53Q96M91 514 aa14.59□□□□□ -0.07
USP4-205ENST00000431357 NSD2O96028 1365 aa14.59□□□□□ -0.07
USP4-205ENST00000431357 HECW2Q9P2P5 1572 aa14.59□□□□□ -0.07
USP4-205ENST00000431357 FRMPD1Q5SYB0 1578 aa14.58□□□□□ -0.08
USP4-205ENST00000431357 CCDC27Q2M243 656 aa14.58□□□□□ -0.08
USP4-205ENST00000431357 PHF23Q9BUL5 403 aaPredicted RBP14.58□□□□□ -0.08
USP4-205ENST00000431357 CANXP27824 592 aaKnown RBP14.57□□□□□ -0.08
USP4-205ENST00000431357 DMRT2Q9Y5R5 561 aa14.57□□□□□ -0.08
USP4-205ENST00000431357 IQSEC2Q5JU85 1478 aa14.57□□□□□ -0.08
USP4-205ENST00000431357 MAPK8IP3Q9UPT6 1336 aa14.57□□□□□ -0.08
USP4-205ENST00000431357 CD109Q6YHK3 1445 aa14.57□□□□□ -0.08
USP4-205ENST00000431357 CLUAP1Q96AJ1 413 aa14.57□□□□□ -0.08
USP4-205ENST00000431357 SLC12A5Q9H2X9 1139 aa14.57□□□□□ -0.08
USP4-205ENST00000431357 ABCC3O15438 1527 aa14.56□□□□□ -0.08
USP4-205ENST00000431357 RGS3P49796 1198 aa14.56□□□□□ -0.08
USP4-205ENST00000431357 EVC2Q86UK5 1308 aa14.56□□□□□ -0.08
USP4-205ENST00000431357 VGFO15240 615 aaPredicted RBP14.56□□□□□ -0.08
USP4-205ENST00000431357 GGT6Q6P531 493 aa14.55□□□□□ -0.08
USP4-205ENST00000431357 TCP11L2Q8N4U5 519 aa14.55□□□□□ -0.08
USP4-205ENST00000431357 PMFBP1Q8TBY8 1022 aa14.54□□□□□ -0.08
USP4-205ENST00000431357 ANKRD36BQ8N2N9 1353 aa14.54□□□□□ -0.08
USP4-205ENST00000431357 IGHDP01880 384 aa14.54□□□□□ -0.08
USP4-205ENST00000431357 RARSP54136 660 aaKnown RBP14.54□□□□□ -0.08
USP4-205ENST00000431357 GLI2P10070 1586 aa14.53□□□□□ -0.08
USP4-205ENST00000431357 ZMYM3Q14202 1370 aa14.53□□□□□ -0.08
USP4-205ENST00000431357 CAMSAP1Q5T5Y3 1602 aa14.53□□□□□ -0.08
USP4-205ENST00000431357 MTHFSP49914 203 aa14.53□□□□□ -0.08
USP4-205ENST00000431357 TMEM132EQ6IEE7 984 aa14.53□□□□□ -0.08
USP4-205ENST00000431357 PIK3C2BO00750 1634 aa14.52□□□□□ -0.08
USP4-205ENST00000431357 MYH16Q9H6N6 1097 aa14.52□□□□□ -0.09
USP4-205ENST00000431357 COG6Q9Y2V7 657 aa14.52□□□□□ -0.09
USP4-205ENST00000431357 VIRMAQ69YN4 1812 aaKnown RBP14.51□□□□□ -0.09
USP4-205ENST00000431357 ARHGAP31Q2M1Z3 1444 aa14.51□□□□□ -0.09
USP4-205ENST00000431357 TNNT2P45379 298 aaPredicted RBP14.51□□□□□ -0.09
USP4-205ENST00000431357 PANK1Q8TE04 598 aa14.51□□□□□ -0.09
USP4-205ENST00000431357 NEO1Q92859 1461 aa14.51□□□□□ -0.09
USP4-205ENST00000431357 ZFYVE9O95405 1425 aa14.51□□□□□ -0.09
USP4-205ENST00000431357 NEXMIFQ5QGS0 1516 aa14.5□□□□□ -0.09
USP4-205ENST00000431357 CT47B1P0C2W7 299 aaPredicted RBP14.5□□□□□ -0.09
USP4-205ENST00000431357 NFKBIBQ15653 356 aa14.5□□□□□ -0.09
USP4-205ENST00000431357 ARHGEF28Q8N1W1 1705 aaKnown RBP14.5□□□□□ -0.09
USP4-205ENST00000431357 TULP4Q9NRJ4 1543 aa14.5□□□□□ -0.09
USP4-205ENST00000431357 NEUROD2Q15784 382 aa14.5□□□□□ -0.09
USP4-205ENST00000431357 FRAT1Q92837 279 aaPredicted RBP14.49□□□□□ -0.09
USP4-205ENST00000431357 RRP7AQ9Y3A4 280 aaKnown RBP14.49□□□□□ -0.09
USP4-205ENST00000431357 CFAP65Q6ZU64 1925 aaKnown RBP14.48□□□□□ -0.09
USP4-205ENST00000431357 ADGRB2O60241 1585 aa14.47□□□□□ -0.09
USP4-205ENST00000431357 SLC4A3P48751 1232 aa14.47□□□□□ -0.09
USP4-205ENST00000431357 SIGLEC1Q9BZZ2 1709 aa14.47□□□□□ -0.09
USP4-205ENST00000431357 RWDD1Q9H446 243 aaPredicted RBP14.47□□□□□ -0.09
USP4-205ENST00000431357 SLC52A1Q9NWF4 448 aa14.47□□□□□ -0.09
USP4-205ENST00000431357 U2AF1L5P0DN76 240 aaPredicted RBP14.46□□□□□ -0.09
USP4-205ENST00000431357 U2AF1Q01081 240 aaKnown RBP eCLIP14.46□□□□□ -0.09
USP4-205ENST00000431357 GSE1Q14687 1217 aa14.46□□□□□ -0.09
USP4-205ENST00000431357 ABCC11Q96J66 1382 aa14.46□□□□□ -0.09
USP4-205ENST00000431357 BECN1Q14457 450 aa14.45□□□□□ -0.1
USP4-205ENST00000431357 USP19O94966 1318 aa14.45□□□□□ -0.1
USP4-205ENST00000431357 PKNOX2Q96KN3 472 aa14.44□□□□□ -0.1
USP4-205ENST00000431357 DIP2CQ9Y2E4 1556 aa14.44□□□□□ -0.1
USP4-205ENST00000431357 MED14O60244 1454 aa14.44□□□□□ -0.1
USP4-205ENST00000431357 ATAD2Q6PL18 1390 aa14.44□□□□□ -0.1
USP4-205ENST00000431357 CABP2Q9NPB3 220 aa14.44□□□□□ -0.1
USP4-205ENST00000431357 ZKSCAN2Q63HK3 967 aa14.43□□□□□ -0.1
USP4-205ENST00000431357 OSCARQ8IYS5 282 aa14.43□□□□□ -0.1
USP4-205ENST00000431357 PCDHB15Q9Y5E8 787 aa14.43□□□□□ -0.1
USP4-205ENST00000431357 RLBP1P12271 317 aa14.42□□□□□ -0.1
USP4-205ENST00000431357 MVPQ14764 893 aaKnown RBP14.42□□□□□ -0.1
USP4-205ENST00000431357 UPF2Q9HAU5 1272 aaKnown RBP14.42□□□□□ -0.1
USP4-205ENST00000431357 IL16Q14005 1332 aa14.42□□□□□ -0.1
USP4-205ENST00000431357 IDI1Q13907 227 aa14.42□□□□□ -0.1
USP4-205ENST00000431357 AEBP2Q6ZN18 517 aaPredicted RBP14.42□□□□□ -0.1
USP4-205ENST00000431357 PNNQ9H307 717 aaKnown RBP14.42□□□□□ -0.1
USP4-205ENST00000431357 TERF2IPQ9NYB0 399 aa14.42□□□□□ -0.1
USP4-205ENST00000431357 A0A1W2PP64 1363 aa14.42□□□□□ -0.1
USP4-205ENST00000431357 PDZRN3Q9UPQ7 1066 aa14.41□□□□□ -0.1
USP4-205ENST00000431357 SRPK2P78362 688 aaKnown RBP14.4□□□□□ -0.1
USP4-205ENST00000431357 DZIP1LQ8IYY4 767 aaKnown RBP14.4□□□□□ -0.1
USP4-205ENST00000431357 PLEKHF1Q96S99 279 aa14.4□□□□□ -0.1
USP4-205ENST00000431357 COL3A1P02461 1466 aaPredicted RBP14.4□□□□□ -0.1
USP4-205ENST00000431357 RAPGEF3O95398 923 aa14.39□□□□□ -0.11
USP4-205ENST00000431357 NUTM2DQ5VT03 806 aaPredicted RBP14.39□□□□□ -0.11
USP4-205ENST00000431357 FTSJ3Q8IY81 847 aaKnown RBP14.39□□□□□ -0.11
USP4-205ENST00000431357 CLTCQ00610 1675 aaKnown RBP14.39□□□□□ -0.11
USP4-205ENST00000431357 ANKRD26Q9UPS8 1709 aa14.39□□□□□ -0.11
USP4-205ENST00000431357 TMPOP42166 694 aaKnown RBP14.39□□□□□ -0.11
USP4-205ENST00000431357 BCL2L13Q9BXK5 485 aa14.39□□□□□ -0.11
USP4-205ENST00000431357 PTPRMP28827 1452 aa14.38□□□□□ -0.11
USP4-205ENST00000431357 NLRP1Q9C000 1473 aa14.38□□□□□ -0.11
USP4-205ENST00000431357 TNNQ9UQP3 1299 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms