RNA–Protein interactions for RNA: ENST00000431283.1

PTPN4-204, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-204ENST00000431283 HLA-CQ95604 372 aa11.71□□□□□ -0.53
PTPN4-204ENST00000431283 SLC24A1O60721 1099 aa11.7□□□□□ -0.54
PTPN4-204ENST00000431283 TRIM66O15016 1216 aa11.69□□□□□ -0.54
PTPN4-204ENST00000431283 GUCA2AQ02747 115 aa11.69□□□□□ -0.54
PTPN4-204ENST00000431283 TRAF7Q6Q0C0 670 aa11.69□□□□□ -0.54
PTPN4-204ENST00000431283 FDX1P10109 184 aa11.68□□□□□ -0.54
PTPN4-204ENST00000431283 BCANQ96GW7 911 aa11.68□□□□□ -0.54
PTPN4-204ENST00000431283 PKDCCQ504Y2 493 aa11.67□□□□□ -0.54
PTPN4-204ENST00000431283 BEGAINQ9BUH8 593 aa11.67□□□□□ -0.54
PTPN4-204ENST00000431283 C6orf229H3BNL8 230 aa11.66□□□□□ -0.54
PTPN4-204ENST00000431283 TNFRSF10AO00220 468 aa11.66□□□□□ -0.54
PTPN4-204ENST00000431283 MMP16P51512 607 aa11.66□□□□□ -0.54
PTPN4-204ENST00000431283 PRR20EP86478 221 aa11.66□□□□□ -0.54
PTPN4-204ENST00000431283 PRR20CP86479 221 aa11.66□□□□□ -0.54
PTPN4-204ENST00000431283 PRR20DP86480 221 aa11.66□□□□□ -0.54
PTPN4-204ENST00000431283 PRR20BP86481 221 aa11.66□□□□□ -0.54
PTPN4-204ENST00000431283 PRR20AP86496 221 aa11.66□□□□□ -0.54
PTPN4-204ENST00000431283 FOXC1Q12948 553 aa11.66□□□□□ -0.54
PTPN4-204ENST00000431283 DIXDC1Q155Q3 683 aa11.66□□□□□ -0.54
PTPN4-204ENST00000431283 SPIRE2Q8WWL2 714 aa11.66□□□□□ -0.54
PTPN4-204ENST00000431283 PARP9Q8IXQ6 854 aa11.65□□□□□ -0.54
PTPN4-204ENST00000431283 CCDC24Q8N4L8 307 aa11.65□□□□□ -0.54
PTPN4-204ENST00000431283 DXOO77932 396 aaKnown RBP11.64□□□□□ -0.55
PTPN4-204ENST00000431283 TRIM67Q6ZTA4 783 aa11.64□□□□□ -0.55
PTPN4-204ENST00000431283 RETREG3Q86VR2 466 aa11.64□□□□□ -0.55
PTPN4-204ENST00000431283 SYMPKQ92797 1274 aaKnown RBP11.62□□□□□ -0.55
PTPN4-204ENST00000431283 JUNDP17535 347 aa11.61□□□□□ -0.55
PTPN4-204ENST00000431283 SLC24A3Q9HC58 644 aa11.61□□□□□ -0.55
PTPN4-204ENST00000431283 FAM187AA6NFU0 413 aa11.6□□□□□ -0.55
PTPN4-204ENST00000431283 MOXD2PA6NHM9 499 aa11.6□□□□□ -0.55
PTPN4-204ENST00000431283 GDF9O60383 454 aa11.6□□□□□ -0.55
PTPN4-204ENST00000431283 DGAT1O75907 488 aa11.6□□□□□ -0.55
PTPN4-204ENST00000431283 NDUFV2P19404 249 aa11.6□□□□□ -0.55
PTPN4-204ENST00000431283 PDE4DQ08499 809 aa11.59□□□□□ -0.55
PTPN4-204ENST00000431283 TBC1D2Q9BYX2 928 aa11.59□□□□□ -0.55
PTPN4-204ENST00000431283 TRIM32Q13049 653 aa11.58□□□□□ -0.56
PTPN4-204ENST00000431283 PCDHGC3Q9UN70 934 aa11.58□□□□□ -0.56
PTPN4-204ENST00000431283 SPDYE5A6NIY4 337 aa11.57□□□□□ -0.56
PTPN4-204ENST00000431283 MS4A1P11836 297 aa11.57□□□□□ -0.56
PTPN4-204ENST00000431283 CYP4X1Q8N118 509 aa11.57□□□□□ -0.56
PTPN4-204ENST00000431283 PKD2L1Q9P0L9 805 aa11.57□□□□□ -0.56
PTPN4-204ENST00000431283 MTMR2Q13614 643 aa11.56□□□□□ -0.56
PTPN4-204ENST00000431283 NUDT12Q9BQG2 462 aa11.55□□□□□ -0.56
PTPN4-204ENST00000431283 TTC24A2A3L6 582 aaPredicted RBP11.54□□□□□ -0.56
PTPN4-204ENST00000431283 GJA5P36382 358 aa11.54□□□□□ -0.56
PTPN4-204ENST00000431283 RSBN1LQ6PCB5 846 aaPredicted RBP11.52□□□□□ -0.57
PTPN4-204ENST00000431283 PRR7Q8TB68 274 aa11.52□□□□□ -0.57
PTPN4-204ENST00000431283 WNT7AO00755 349 aa11.51□□□□□ -0.57
PTPN4-204ENST00000431283 LCE2BO14633 110 aa11.51□□□□□ -0.57
PTPN4-204ENST00000431283 CCNYL3P0C7X3 344 aa11.51□□□□□ -0.57
PTPN4-204ENST00000431283 RIC3Q7Z5B4 369 aa11.5□□□□□ -0.57
PTPN4-204ENST00000431283 ZBTB3Q9H5J0 574 aa11.5□□□□□ -0.57
PTPN4-204ENST00000431283 SPTLC1O15269 473 aa11.49□□□□□ -0.57
PTPN4-204ENST00000431283 WNT7BP56706 349 aa11.49□□□□□ -0.57
PTPN4-204ENST00000431283 MYT1Q01538 1121 aa11.49□□□□□ -0.57
PTPN4-204ENST00000431283 PTPRNQ16849 979 aa11.49□□□□□ -0.57
PTPN4-204ENST00000431283 CSPP1Q1MSJ5 1256 aa11.48□□□□□ -0.57
PTPN4-204ENST00000431283 TOR4AQ9NXH8 423 aa11.48□□□□□ -0.57
PTPN4-204ENST00000431283 ZNF787Q6DD87 383 aa11.47□□□□□ -0.57
PTPN4-204ENST00000431283 DESI1Q6ICB0 168 aa11.47□□□□□ -0.57
PTPN4-204ENST00000431283 SNIP1Q8TAD8 396 aaKnown RBP11.47□□□□□ -0.57
PTPN4-204ENST00000431283 MRGPRX2Q96LB1 330 aa11.46□□□□□ -0.57
PTPN4-204ENST00000431283 RSPH6AQ9H0K4 717 aa11.46□□□□□ -0.57
PTPN4-204ENST00000431283 PCDHB15Q9Y5E8 787 aa11.46□□□□□ -0.57
PTPN4-204ENST00000431283 NUTM2BA6NNL0 878 aaPredicted RBP11.45□□□□□ -0.58
PTPN4-204ENST00000431283 NUTM2EB1AL46 878 aaPredicted RBP11.45□□□□□ -0.58
PTPN4-204ENST00000431283 RC3H1Q5TC82 1133 aaKnown RBP11.45□□□□□ -0.58
PTPN4-204ENST00000431283 NUTM2DQ5VT03 806 aaPredicted RBP11.45□□□□□ -0.58
PTPN4-204ENST00000431283 PRPF38BQ5VTL8 546 aaKnown RBP11.45□□□□□ -0.58
PTPN4-204ENST00000431283 NUTM2AQ8IVF1 878 aaPredicted RBP11.45□□□□□ -0.58
PTPN4-204ENST00000431283 HRCP23327 699 aa11.44□□□□□ -0.58
PTPN4-204ENST00000431283 EVA1BQ9NVM1 165 aa11.44□□□□□ -0.58
PTPN4-204ENST00000431283 CTHP32929 405 aa11.43□□□□□ -0.58
PTPN4-204ENST00000431283 MYSM1Q5VVJ2 828 aa11.43□□□□□ -0.58
PTPN4-204ENST00000431283 TSC1Q92574 1164 aa11.43□□□□□ -0.58
PTPN4-204ENST00000431283 KCNH2Q12809 1159 aa11.42□□□□□ -0.58
PTPN4-204ENST00000431283 PTCRAQ6ISU1 281 aaPredicted RBP11.42□□□□□ -0.58
PTPN4-204ENST00000431283 EHBP1Q8NDI1 1231 aa11.42□□□□□ -0.58
PTPN4-204ENST00000431283 UNC93B1Q9H1C4 597 aa11.42□□□□□ -0.58
PTPN4-204ENST00000431283 CABLES1Q8TDN4 633 aa11.41□□□□□ -0.58
PTPN4-204ENST00000431283 ATP1B4Q9UN42 357 aaPredicted RBP11.41□□□□□ -0.58
PTPN4-204ENST00000431283 CFAP99D6REC4 459 aa11.4□□□□□ -0.58
PTPN4-204ENST00000431283 AXIN1O15169 862 aa11.4□□□□□ -0.58
PTPN4-204ENST00000431283 ST8SIA5O15466 376 aa11.4□□□□□ -0.58
PTPN4-204ENST00000431283 SKOR1P84550 965 aa11.4□□□□□ -0.58
PTPN4-204ENST00000431283 CTC1Q2NKJ3 1217 aa11.4□□□□□ -0.58
PTPN4-204ENST00000431283 CLK2P49760 499 aaKnown RBP11.39□□□□□ -0.59
PTPN4-204ENST00000431283 LYPD8Q6UX82 237 aa11.39□□□□□ -0.59
PTPN4-204ENST00000431283 AAASQ9NRG9 546 aa11.39□□□□□ -0.59
PTPN4-204ENST00000431283 LIMD1Q9UGP4 676 aa11.39□□□□□ -0.59
PTPN4-204ENST00000431283 TUSC1Q2TAM9 212 aa11.38□□□□□ -0.59
PTPN4-204ENST00000431283 AVPP01185 164 aa11.37□□□□□ -0.59
PTPN4-204ENST00000431283 LINC01559Q495D7 138 aa11.37□□□□□ -0.59
PTPN4-204ENST00000431283 HELBQ8NG08 1087 aaPredicted RBP11.37□□□□□ -0.59
PTPN4-204ENST00000431283 POLR3EQ9NVU0 708 aa11.37□□□□□ -0.59
PTPN4-204ENST00000431283 J3QL48 77 aa11.36□□□□□ -0.59
PTPN4-204ENST00000431283 ALDH1A1P00352 501 aa11.36□□□□□ -0.59
PTPN4-204ENST00000431283 SMPD1P17405 629 aa11.36□□□□□ -0.59
PTPN4-204ENST00000431283 SH3BP2P78314 561 aa11.36□□□□□ -0.59
PTPN4-204ENST00000431283 CRIPAKQ8N1N5 446 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms