RNA–Protein interactions for RNA: ENST00000427478.6

CNEP1R1-202, Transcript of CTD nuclear envelope phosphatase 1 regulatory subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNEP1R1, Length 2,117 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNEP1R1-202ENST00000427478 C3P01024 1663 aa29.15■■■□□ 2.26
CNEP1R1-202ENST00000427478 NUDCQ9Y266 331 aa29.15■■■□□ 2.26
CNEP1R1-202ENST00000427478 DLC1Q96QB1 1528 aa29.13■■■□□ 2.25
CNEP1R1-202ENST00000427478 SRPK2P78362 688 aaKnown RBP29.12■■■□□ 2.25
CNEP1R1-202ENST00000427478 IRX6P78412 446 aaPredicted RBP29.12■■■□□ 2.25
CNEP1R1-202ENST00000427478 ANKRD36BQ8N2N9 1353 aa29.11■■■□□ 2.25
CNEP1R1-202ENST00000427478 SALL2Q9Y467 1007 aaPredicted RBP29.11■■■□□ 2.25
CNEP1R1-202ENST00000427478 CEBPAP49715 358 aaPredicted RBP29.1■■■□□ 2.25
CNEP1R1-202ENST00000427478 WDR43Q15061 677 aaKnown RBP eCLIP29.09■■■□□ 2.25
CNEP1R1-202ENST00000427478 ADAMTS8Q9UP79 889 aa29.09■■■□□ 2.25
CNEP1R1-202ENST00000427478 TMEM2Q9UHN6 1383 aa29.08■■■□□ 2.25
CNEP1R1-202ENST00000427478 HDGFP51858 240 aaKnown RBP29.07■■■□□ 2.24
CNEP1R1-202ENST00000427478 NLRP1Q9C000 1473 aa29.06■■■□□ 2.24
CNEP1R1-202ENST00000427478 NINLQ9Y2I6 1382 aa29.06■■■□□ 2.24
CNEP1R1-202ENST00000427478 ATAD2Q6PL18 1390 aa29.05■■■□□ 2.24
CNEP1R1-202ENST00000427478 METP08581 1390 aa29.05■■■□□ 2.24
CNEP1R1-202ENST00000427478 CGNL1Q0VF96 1302 aa29.04■■■□□ 2.24
CNEP1R1-202ENST00000427478 KNDC1Q76NI1 1749 aa29.04■■■□□ 2.24
CNEP1R1-202ENST00000427478 ABCC11Q96J66 1382 aa29.04■■■□□ 2.24
CNEP1R1-202ENST00000427478 PLEKHH1Q9ULM0 1364 aa29.04■■■□□ 2.24
CNEP1R1-202ENST00000427478 WAPLQ7Z5K2 1190 aa29.03■■■□□ 2.24
CNEP1R1-202ENST00000427478 MORC1Q86VD1 984 aa29.03■■■□□ 2.24
CNEP1R1-202ENST00000427478 PLPPR3Q6T4P5 718 aa29.03■■■□□ 2.24
CNEP1R1-202ENST00000427478 A0A1W2PP64 1363 aa29.02■■■□□ 2.24
CNEP1R1-202ENST00000427478 CDK19Q9BWU1 502 aa29■■■□□ 2.23
CNEP1R1-202ENST00000427478 TNNT2P45379 298 aaPredicted RBP28.98■■■□□ 2.23
CNEP1R1-202ENST00000427478 PELP1Q8IZL8 1130 aaKnown RBP28.98■■■□□ 2.23
CNEP1R1-202ENST00000427478 NSD2O96028 1365 aa28.97■■■□□ 2.23
CNEP1R1-202ENST00000427478 CD163L1Q9NR16 1453 aa28.97■■■□□ 2.23
CNEP1R1-202ENST00000427478 PDE3BQ13370 1112 aa28.96■■■□□ 2.23
CNEP1R1-202ENST00000427478 CPS1P31327 1500 aa28.95■■■□□ 2.22
CNEP1R1-202ENST00000427478 POLR3AO14802 1390 aaPredicted RBP28.95■■■□□ 2.22
CNEP1R1-202ENST00000427478 SHPRHQ149N8 1683 aa28.94■■■□□ 2.22
CNEP1R1-202ENST00000427478 TXNDC2Q86VQ3 553 aa28.93■■■□□ 2.22
CNEP1R1-202ENST00000427478 TERF2IPQ9NYB0 399 aa28.93■■■□□ 2.22
CNEP1R1-202ENST00000427478 ADAMTS13Q76LX8 1427 aa28.93■■■□□ 2.22
CNEP1R1-202ENST00000427478 LTKP29376 864 aa28.93■■■□□ 2.22
CNEP1R1-202ENST00000427478 TECPR2O15040 1411 aa28.93■■■□□ 2.22
CNEP1R1-202ENST00000427478 PLEKHG1Q9ULL1 1385 aa28.92■■■□□ 2.22
CNEP1R1-202ENST00000427478 ANKRD26Q9UPS8 1709 aa28.92■■■□□ 2.22
CNEP1R1-202ENST00000427478 ERICH6BQ5W0A0 696 aa28.91■■■□□ 2.22
CNEP1R1-202ENST00000427478 CDCA7LQ96GN5 454 aa28.91■■■□□ 2.22
CNEP1R1-202ENST00000427478 FAM135BQ49AJ0 1406 aa28.9■■■□□ 2.22
CNEP1R1-202ENST00000427478 SLIT1O75093 1534 aa28.89■■■□□ 2.22
CNEP1R1-202ENST00000427478 RNF123Q5XPI4 1314 aa28.89■■■□□ 2.21
CNEP1R1-202ENST00000427478 CCDC146Q8IYE0 955 aa28.88■■■□□ 2.21
CNEP1R1-202ENST00000427478 CABP1Q9NZU7 370 aa28.88■■■□□ 2.21
CNEP1R1-202ENST00000427478 KIF20BQ96Q89 1820 aa28.88■■■□□ 2.21
CNEP1R1-202ENST00000427478 HDGFL2Q7Z4V5 671 aaPredicted RBP28.87■■■□□ 2.21
CNEP1R1-202ENST00000427478 RIMS1Q86UR5 1692 aaKnown RBP28.87■■■□□ 2.21
CNEP1R1-202ENST00000427478 ARHGAP23Q9P227 1491 aa28.87■■■□□ 2.21
CNEP1R1-202ENST00000427478 EID1Q9Y6B2 187 aa28.85■■■□□ 2.21
CNEP1R1-202ENST00000427478 SIRT1Q96EB6 747 aa28.85■■■□□ 2.21
CNEP1R1-202ENST00000427478 WASLO00401 505 aaPredicted RBP28.84■■■□□ 2.21
CNEP1R1-202ENST00000427478 MTHFSP49914 203 aa28.84■■■□□ 2.21
CNEP1R1-202ENST00000427478 ATP7BP35670 1465 aa28.84■■■□□ 2.21
CNEP1R1-202ENST00000427478 GGNBP2Q9H3C7 697 aa28.84■■■□□ 2.21
CNEP1R1-202ENST00000427478 ROBO2Q9HCK4 1378 aa28.82■■■□□ 2.2
CNEP1R1-202ENST00000427478 MED14O60244 1454 aa28.82■■■□□ 2.2
CNEP1R1-202ENST00000427478 PPP4R2Q9NY27 417 aa28.81■■■□□ 2.2
CNEP1R1-202ENST00000427478 FYB1O15117 783 aa28.79■■■□□ 2.2
CNEP1R1-202ENST00000427478 SLC26A8Q96RN1 970 aa28.79■■■□□ 2.2
CNEP1R1-202ENST00000427478 RCAN3Q9UKA8 241 aa28.79■■■□□ 2.2
CNEP1R1-202ENST00000427478 PPIP5K1Q6PFW1 1433 aa28.79■■■□□ 2.2
CNEP1R1-202ENST00000427478 CFAP53Q96M91 514 aa28.79■■■□□ 2.2
CNEP1R1-202ENST00000427478 APAF1O14727 1248 aa28.78■■■□□ 2.2
CNEP1R1-202ENST00000427478 ZNF521Q96K83 1311 aa28.78■■■□□ 2.2
CNEP1R1-202ENST00000427478 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.78■■■□□ 2.2
CNEP1R1-202ENST00000427478 THEMISQ8N1K5 641 aaPredicted RBP28.78■■■□□ 2.2
CNEP1R1-202ENST00000427478 CEP170BQ9Y4F5 1589 aaPredicted RBP28.77■■■□□ 2.2
CNEP1R1-202ENST00000427478 PTPRUQ92729 1446 aa28.76■■■□□ 2.19
CNEP1R1-202ENST00000427478 ADGRB2O60241 1585 aa28.75■■■□□ 2.19
CNEP1R1-202ENST00000427478 NUDT16Q96DE0 195 aaKnown RBP28.73■■■□□ 2.19
CNEP1R1-202ENST00000427478 ITSN1Q15811 1721 aa28.73■■■□□ 2.19
CNEP1R1-202ENST00000427478 CDC42BPGQ6DT37 1551 aa28.73■■■□□ 2.19
CNEP1R1-202ENST00000427478 RRP1P56182 461 aaKnown RBP28.73■■■□□ 2.19
CNEP1R1-202ENST00000427478 DNAJC5Q9H3Z4 198 aa28.73■■■□□ 2.19
CNEP1R1-202ENST00000427478 DIP2AQ14689 1571 aa28.72■■■□□ 2.19
CNEP1R1-202ENST00000427478 GOLGA2Q08379 1002 aa28.72■■■□□ 2.19
CNEP1R1-202ENST00000427478 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.72■■■□□ 2.19
CNEP1R1-202ENST00000427478 CPSF1Q10570 1443 aaKnown RBP28.72■■■□□ 2.19
CNEP1R1-202ENST00000427478 MON2Q7Z3U7 1717 aa28.72■■■□□ 2.19
CNEP1R1-202ENST00000427478 AKAP12Q02952 1782 aa28.71■■■□□ 2.19
CNEP1R1-202ENST00000427478 ADAMTSL3P82987 1691 aa28.71■■■□□ 2.19
CNEP1R1-202ENST00000427478 NCKAP5LQ9HCH0 1330 aa28.7■■■□□ 2.19
CNEP1R1-202ENST00000427478 TBX22Q9Y458 520 aa28.68■■■□□ 2.18
CNEP1R1-202ENST00000427478 CCDC61Q9Y6R9 512 aa28.68■■■□□ 2.18
CNEP1R1-202ENST00000427478 EDC4Q6P2E9 1401 aaKnown RBP28.68■■■□□ 2.18
CNEP1R1-202ENST00000427478 B4GALNT3Q6L9W6 998 aa28.67■■■□□ 2.18
CNEP1R1-202ENST00000427478 DUSP27Q5VZP5 1158 aa28.67■■■□□ 2.18
CNEP1R1-202ENST00000427478 PRR36Q9H6K5 1346 aa28.67■■■□□ 2.18
CNEP1R1-202ENST00000427478 COL3A1P02461 1466 aaPredicted RBP28.67■■■□□ 2.18
CNEP1R1-202ENST00000427478 IQSEC2Q5JU85 1478 aa28.67■■■□□ 2.18
CNEP1R1-202ENST00000427478 AMOTL2Q9Y2J4 779 aa28.66■■■□□ 2.18
CNEP1R1-202ENST00000427478 TOPAZ1Q8N9V7 1692 aa28.66■■■□□ 2.18
CNEP1R1-202ENST00000427478 RUNDC1Q96C34 613 aa28.66■■■□□ 2.18
CNEP1R1-202ENST00000427478 ZNF142P52746 1687 aaPredicted RBP28.65■■■□□ 2.18
CNEP1R1-202ENST00000427478 SLFN5Q08AF3 891 aa28.64■■■□□ 2.18
CNEP1R1-202ENST00000427478 NGEFQ8N5V2 710 aa28.64■■■□□ 2.18
CNEP1R1-202ENST00000427478 PTCH1Q13635 1447 aa28.63■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms