RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 CPS1P31327 1500 aa18.74■□□□□ 0.59
PRPF39-202ENST00000424478 TECPR2O15040 1411 aa18.74■□□□□ 0.59
PRPF39-202ENST00000424478 CCDC7Q96M83 1385 aa18.74■□□□□ 0.59
PRPF39-202ENST00000424478 TMF1P82094 1093 aa18.74■□□□□ 0.59
PRPF39-202ENST00000424478 KNDC1Q76NI1 1749 aa18.74■□□□□ 0.59
PRPF39-202ENST00000424478 SRPK2P78362 688 aaKnown RBP18.73■□□□□ 0.59
PRPF39-202ENST00000424478 TULP4Q9NRJ4 1543 aa18.73■□□□□ 0.59
PRPF39-202ENST00000424478 DLC1Q96QB1 1528 aa18.71■□□□□ 0.59
PRPF39-202ENST00000424478 PIK3R4Q99570 1358 aa18.71■□□□□ 0.59
PRPF39-202ENST00000424478 CDK19Q9BWU1 502 aa18.71■□□□□ 0.59
PRPF39-202ENST00000424478 TMC1Q8TDI8 760 aa18.69■□□□□ 0.58
PRPF39-202ENST00000424478 PTCH1Q13635 1447 aa18.69■□□□□ 0.58
PRPF39-202ENST00000424478 FAM135BQ49AJ0 1406 aa18.69■□□□□ 0.58
PRPF39-202ENST00000424478 TMEM94Q12767 1356 aa18.68■□□□□ 0.58
PRPF39-202ENST00000424478 NALCNQ8IZF0 1738 aa18.67■□□□□ 0.58
PRPF39-202ENST00000424478 EVC2Q86UK5 1308 aa18.67■□□□□ 0.58
PRPF39-202ENST00000424478 DMRT2Q9Y5R5 561 aa18.67■□□□□ 0.58
PRPF39-202ENST00000424478 NWD1Q149M9 1564 aa18.66■□□□□ 0.58
PRPF39-202ENST00000424478 SLC12A5Q9H2X9 1139 aa18.66■□□□□ 0.58
PRPF39-202ENST00000424478 WASLO00401 505 aaPredicted RBP18.66■□□□□ 0.58
PRPF39-202ENST00000424478 PRR36Q9H6K5 1346 aa18.64■□□□□ 0.57
PRPF39-202ENST00000424478 SBNO2Q9Y2G9 1366 aa18.64■□□□□ 0.57
PRPF39-202ENST00000424478 SIRT1Q96EB6 747 aa18.64■□□□□ 0.57
PRPF39-202ENST00000424478 DIEXFQ68CQ4 756 aaKnown RBP18.63■□□□□ 0.57
PRPF39-202ENST00000424478 RGPD8O14715 1765 aaPredicted RBP18.62■□□□□ 0.57
PRPF39-202ENST00000424478 XIRP1Q702N8 1843 aaKnown RBP18.62■□□□□ 0.57
PRPF39-202ENST00000424478 LRRC7Q96NW7 1537 aa18.61■□□□□ 0.57
PRPF39-202ENST00000424478 PMFBP1Q8TBY8 1022 aa18.61■□□□□ 0.57
PRPF39-202ENST00000424478 CABP1Q9NZU7 370 aa18.61■□□□□ 0.57
PRPF39-202ENST00000424478 NUDT16Q96DE0 195 aaKnown RBP18.61■□□□□ 0.57
PRPF39-202ENST00000424478 PANK3Q9H999 370 aa18.6■□□□□ 0.57
PRPF39-202ENST00000424478 NKTRP30414 1462 aaKnown RBP18.6■□□□□ 0.57
PRPF39-202ENST00000424478 MYOM1P52179 1685 aa18.6■□□□□ 0.57
PRPF39-202ENST00000424478 ADGRL3Q9HAR2 1447 aa18.59■□□□□ 0.57
PRPF39-202ENST00000424478 USP32Q8NFA0 1604 aa18.56■□□□□ 0.56
PRPF39-202ENST00000424478 CDCA8Q53HL2 280 aa18.56■□□□□ 0.56
PRPF39-202ENST00000424478 ORAI2Q96SN7 254 aa18.56■□□□□ 0.56
PRPF39-202ENST00000424478 ATP7BP35670 1465 aa18.56■□□□□ 0.56
PRPF39-202ENST00000424478 C19orf44Q9H6X5 657 aa18.55■□□□□ 0.56
PRPF39-202ENST00000424478 PPIP5K1Q6PFW1 1433 aa18.55■□□□□ 0.56
PRPF39-202ENST00000424478 ADGRB2O60241 1585 aa18.55■□□□□ 0.56
PRPF39-202ENST00000424478 DDX17Q92841 729 aaKnown RBP18.54■□□□□ 0.56
PRPF39-202ENST00000424478 CARD14Q9BXL6 1004 aa18.54■□□□□ 0.56
PRPF39-202ENST00000424478 XPCQ01831 940 aaPredicted RBP18.54■□□□□ 0.56
PRPF39-202ENST00000424478 ESCO1Q5FWF5 840 aa18.54■□□□□ 0.56
PRPF39-202ENST00000424478 LTBP4Q8N2S1 1624 aa18.54■□□□□ 0.56
PRPF39-202ENST00000424478 ATF3P18847 181 aa18.53■□□□□ 0.56
PRPF39-202ENST00000424478 FMN2Q9NZ56 1722 aa18.52■□□□□ 0.56
PRPF39-202ENST00000424478 CCDC61Q9Y6R9 512 aa18.52■□□□□ 0.56
PRPF39-202ENST00000424478 MSH6P52701 1360 aa18.52■□□□□ 0.55
PRPF39-202ENST00000424478 PLEKHG5O94827 1062 aa18.52■□□□□ 0.55
PRPF39-202ENST00000424478 A0A1W2PP64 1363 aa18.51■□□□□ 0.55
PRPF39-202ENST00000424478 CDC42BPGQ6DT37 1551 aa18.51■□□□□ 0.55
PRPF39-202ENST00000424478 ATAD2Q6PL18 1390 aa18.51■□□□□ 0.55
PRPF39-202ENST00000424478 CC2D1BQ5T0F9 858 aaKnown RBP18.5■□□□□ 0.55
PRPF39-202ENST00000424478 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.5■□□□□ 0.552e-6■■■□□ 14.7
PRPF39-202ENST00000424478 CD163L1Q9NR16 1453 aa18.49■□□□□ 0.55
PRPF39-202ENST00000424478 ACEP12821 1306 aa18.49■□□□□ 0.55
PRPF39-202ENST00000424478 SLC24A1O60721 1099 aa18.49■□□□□ 0.55
PRPF39-202ENST00000424478 FOXO3O43524 673 aa18.48■□□□□ 0.55
PRPF39-202ENST00000424478 MIER1Q8N108 512 aa18.48■□□□□ 0.55
PRPF39-202ENST00000424478 NGDNQ8NEJ9 315 aaKnown RBP18.48■□□□□ 0.55
PRPF39-202ENST00000424478 PER1O15534 1290 aaPredicted RBP18.47■□□□□ 0.55
PRPF39-202ENST00000424478 NSD3Q9BZ95 1437 aa18.47■□□□□ 0.55
PRPF39-202ENST00000424478 MST1RQ04912 1400 aa18.46■□□□□ 0.55
PRPF39-202ENST00000424478 ZRANB1Q9UGI0 708 aa18.46■□□□□ 0.55
PRPF39-202ENST00000424478 C1orf167Q5SNV9 1468 aa18.45■□□□□ 0.54
PRPF39-202ENST00000424478 CADPS2Q86UW7 1296 aa18.45■□□□□ 0.54
PRPF39-202ENST00000424478 PHF8Q9UPP1 1060 aa18.45■□□□□ 0.54
PRPF39-202ENST00000424478 TOPAZ1Q8N9V7 1692 aa18.45■□□□□ 0.54
PRPF39-202ENST00000424478 TNNT2P45379 298 aaPredicted RBP18.44■□□□□ 0.54
PRPF39-202ENST00000424478 NUTM2GQ5VZR2 741 aa18.44■□□□□ 0.54
PRPF39-202ENST00000424478 KNSTRNQ9Y448 316 aa18.44■□□□□ 0.54
PRPF39-202ENST00000424478 SCAF1Q9H7N4 1312 aaKnown RBP18.44■□□□□ 0.54
PRPF39-202ENST00000424478 KTN1Q86UP2 1357 aaKnown RBP18.44■□□□□ 0.54
PRPF39-202ENST00000424478 SLAIN2Q9P270 581 aa18.44■□□□□ 0.54
PRPF39-202ENST00000424478 ANKRD36BQ8N2N9 1353 aa18.44■□□□□ 0.54
PRPF39-202ENST00000424478 PIP4K2BP78356 416 aa18.43■□□□□ 0.54
PRPF39-202ENST00000424478 HDGFL2Q7Z4V5 671 aaPredicted RBP18.43■□□□□ 0.54
PRPF39-202ENST00000424478 TERF2IPQ9NYB0 399 aa18.43■□□□□ 0.54
PRPF39-202ENST00000424478 GGNBP2Q9H3C7 697 aa18.42■□□□□ 0.54
PRPF39-202ENST00000424478 PAK3O75914 559 aaPredicted RBP18.42■□□□□ 0.54
PRPF39-202ENST00000424478 PUS7Q96PZ0 661 aaKnown RBP18.42■□□□□ 0.54
PRPF39-202ENST00000424478 FBLN1P23142 703 aa18.42■□□□□ 0.54
PRPF39-202ENST00000424478 NME9Q86XW9 330 aa18.41■□□□□ 0.54
PRPF39-202ENST00000424478 PLEKHG3A1L390 1219 aa18.4■□□□□ 0.54
PRPF39-202ENST00000424478 ANKARQ7Z5J8 1434 aa18.4■□□□□ 0.54
PRPF39-202ENST00000424478 ITSN1Q15811 1721 aa18.4■□□□□ 0.54
PRPF39-202ENST00000424478 BRINP3Q76B58 766 aa18.4■□□□□ 0.54
PRPF39-202ENST00000424478 SOX12O15370 315 aa18.4■□□□□ 0.54
PRPF39-202ENST00000424478 AMER1Q5JTC6 1135 aaPredicted RBP18.4■□□□□ 0.54
PRPF39-202ENST00000424478 CPSF1Q10570 1443 aaKnown RBP18.39■□□□□ 0.53
PRPF39-202ENST00000424478 NCOA3Q9Y6Q9 1424 aa18.39■□□□□ 0.53
PRPF39-202ENST00000424478 LMOD2Q6P5Q4 547 aa18.39■□□□□ 0.53
PRPF39-202ENST00000424478 PSME1Q06323 249 aa18.39■□□□□ 0.53
PRPF39-202ENST00000424478 DCCP43146 1447 aa18.38■□□□□ 0.53
PRPF39-202ENST00000424478 ANP32CO43423 234 aa18.38■□□□□ 0.53
PRPF39-202ENST00000424478 AKAP12Q02952 1782 aa18.37■□□□□ 0.53
PRPF39-202ENST00000424478 UBAP1LF5GYI3 381 aa18.37■□□□□ 0.53
PRPF39-202ENST00000424478 USP6P35125 1406 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms