RNA–Protein interactions for RNA: ENST00000422544.2

PDGFC-202, Transcript of platelet derived growth factor C, humanhuman

TSL 5 BASIC

Gene PDGFC, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-202ENST00000422544 SIRT1Q96EB6 747 aa13.21□□□□□ -0.29
PDGFC-202ENST00000422544 PRAM1Q96QH2 718 aa13.21□□□□□ -0.29
PDGFC-202ENST00000422544 EP400Q96L91 3159 aa13.21□□□□□ -0.3
PDGFC-202ENST00000422544 SAFB2Q14151 953 aaKnown RBP eCLIP13.2□□□□□ -0.3
PDGFC-202ENST00000422544 POGKQ9P215 609 aa13.2□□□□□ -0.3
PDGFC-202ENST00000422544 PLEKHH1Q9ULM0 1364 aa13.2□□□□□ -0.3
PDGFC-202ENST00000422544 UPF1Q92900 1129 aaKnown RBP eCLIP13.19□□□□□ -0.3
PDGFC-202ENST00000422544 CARD11Q9BXL7 1154 aa13.19□□□□□ -0.3
PDGFC-202ENST00000422544 C19orf44Q9H6X5 657 aa13.19□□□□□ -0.3
PDGFC-202ENST00000422544 LAMC1P11047 1609 aa13.19□□□□□ -0.3
PDGFC-202ENST00000422544 TECPR2O15040 1411 aa13.19□□□□□ -0.3
PDGFC-202ENST00000422544 PTCH1Q13635 1447 aa13.19□□□□□ -0.3
PDGFC-202ENST00000422544 XRN1Q8IZH2 1706 aaKnown RBP13.19□□□□□ -0.3
PDGFC-202ENST00000422544 SHPRHQ149N8 1683 aa13.18□□□□□ -0.3
PDGFC-202ENST00000422544 NCOA3Q9Y6Q9 1424 aa13.17□□□□□ -0.3
PDGFC-202ENST00000422544 MSH6P52701 1360 aa13.17□□□□□ -0.3
PDGFC-202ENST00000422544 ATF3P18847 181 aa13.15□□□□□ -0.3
PDGFC-202ENST00000422544 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.15□□□□□ -0.3
PDGFC-202ENST00000422544 KIAA1210Q9ULL0 1709 aa13.15□□□□□ -0.3
PDGFC-202ENST00000422544 GPRASP1Q5JY77 1395 aa13.15□□□□□ -0.3
PDGFC-202ENST00000422544 RALGAPBQ86X10 1494 aa13.15□□□□□ -0.3
PDGFC-202ENST00000422544 TRPM1Q7Z4N2 1603 aa13.14□□□□□ -0.31
PDGFC-202ENST00000422544 MINK1Q8N4C8 1332 aaPredicted RBP13.13□□□□□ -0.31
PDGFC-202ENST00000422544 DLC1Q96QB1 1528 aa13.13□□□□□ -0.31
PDGFC-202ENST00000422544 AHDC1Q5TGY3 1603 aaPredicted RBP13.13□□□□□ -0.31
PDGFC-202ENST00000422544 CADPS2Q86UW7 1296 aa13.13□□□□□ -0.31
PDGFC-202ENST00000422544 HIRIP3Q9BW71 556 aaPredicted RBP13.13□□□□□ -0.31
PDGFC-202ENST00000422544 ADGRL3Q9HAR2 1447 aa13.13□□□□□ -0.31
PDGFC-202ENST00000422544 JCADQ9P266 1359 aa13.12□□□□□ -0.31
PDGFC-202ENST00000422544 SLAIN2Q9P270 581 aa13.12□□□□□ -0.31
PDGFC-202ENST00000422544 CENPJQ9HC77 1338 aaPredicted RBP13.12□□□□□ -0.31
PDGFC-202ENST00000422544 PPP4R3CPQ6ZMV5 832 aa13.11□□□□□ -0.31
PDGFC-202ENST00000422544 NUTM2FA1L443 756 aa13.1□□□□□ -0.31
PDGFC-202ENST00000422544 KNDC1Q76NI1 1749 aa13.1□□□□□ -0.31
PDGFC-202ENST00000422544 EIF3AQ14152 1382 aaKnown RBP13.09□□□□□ -0.31
PDGFC-202ENST00000422544 DCCP43146 1447 aa13.08□□□□□ -0.32
PDGFC-202ENST00000422544 ST20-MTHFSA0A0A6YYL1 179 aa13.08□□□□□ -0.32
PDGFC-202ENST00000422544 WASLO00401 505 aaPredicted RBP13.08□□□□□ -0.32
PDGFC-202ENST00000422544 CDK19Q9BWU1 502 aa13.08□□□□□ -0.32
PDGFC-202ENST00000422544 NHSL1Q5SYE7 1610 aa13.07□□□□□ -0.32
PDGFC-202ENST00000422544 USP47Q96K76 1375 aa13.07□□□□□ -0.32
PDGFC-202ENST00000422544 ORAI2Q96SN7 254 aa13.06□□□□□ -0.32
PDGFC-202ENST00000422544 MST1RQ04912 1400 aa13.05□□□□□ -0.32
PDGFC-202ENST00000422544 NALCNQ8IZF0 1738 aa13.05□□□□□ -0.32
PDGFC-202ENST00000422544 ARHGEF28Q8N1W1 1705 aaKnown RBP13.05□□□□□ -0.32
PDGFC-202ENST00000422544 CDK12Q9NYV4 1490 aaPredicted RBP13.05□□□□□ -0.32
PDGFC-202ENST00000422544 ESCO1Q5FWF5 840 aa13.05□□□□□ -0.32
PDGFC-202ENST00000422544 C1orf167Q5SNV9 1468 aa13.04□□□□□ -0.32
PDGFC-202ENST00000422544 EIF4G2P78344 907 aaKnown RBP eCLIP13.04□□□□□ -0.32
PDGFC-202ENST00000422544 SRPK2P78362 688 aaKnown RBP13.04□□□□□ -0.32
PDGFC-202ENST00000422544 BRINP3Q76B58 766 aa13.04□□□□□ -0.32
PDGFC-202ENST00000422544 TESK2Q96S53 571 aa13.04□□□□□ -0.32
PDGFC-202ENST00000422544 CABP2Q9NPB3 220 aa13.04□□□□□ -0.32
PDGFC-202ENST00000422544 HSPA5P11021 654 aaKnown RBP13.03□□□□□ -0.32
PDGFC-202ENST00000422544 NUDT16Q96DE0 195 aaKnown RBP13.03□□□□□ -0.32
PDGFC-202ENST00000422544 EVC2Q86UK5 1308 aa13.03□□□□□ -0.32
PDGFC-202ENST00000422544 PRR36Q9H6K5 1346 aa13.03□□□□□ -0.32
PDGFC-202ENST00000422544 RGS12O14924 1447 aa13.03□□□□□ -0.32
PDGFC-202ENST00000422544 CDC42BPGQ6DT37 1551 aa13.03□□□□□ -0.32
PDGFC-202ENST00000422544 ZEB1P37275 1124 aaPredicted RBP13.02□□□□□ -0.33
PDGFC-202ENST00000422544 DDX17Q92841 729 aaKnown RBP13.01□□□□□ -0.33
PDGFC-202ENST00000422544 SPATA31A6Q5VVP1 1343 aa13.01□□□□□ -0.33
PDGFC-202ENST00000422544 ADGRB2O60241 1585 aa13□□□□□ -0.33
PDGFC-202ENST00000422544 SBNO2Q9Y2G9 1366 aa13□□□□□ -0.33
PDGFC-202ENST00000422544 PMFBP1Q8TBY8 1022 aa13□□□□□ -0.33
PDGFC-202ENST00000422544 PHF8Q9UPP1 1060 aa13□□□□□ -0.33
PDGFC-202ENST00000422544 CCDC61Q9Y6R9 512 aa13□□□□□ -0.33
PDGFC-202ENST00000422544 ANKARQ7Z5J8 1434 aa12.99□□□□□ -0.33
PDGFC-202ENST00000422544 FOXO3O43524 673 aa12.99□□□□□ -0.33
PDGFC-202ENST00000422544 SLC24A1O60721 1099 aa12.99□□□□□ -0.33
PDGFC-202ENST00000422544 TMF1P82094 1093 aa12.99□□□□□ -0.33
PDGFC-202ENST00000422544 QRICH2Q9H0J4 1663 aa12.99□□□□□ -0.33
PDGFC-202ENST00000422544 TULP4Q9NRJ4 1543 aa12.98□□□□□ -0.33
PDGFC-202ENST00000422544 XPCQ01831 940 aaPredicted RBP12.97□□□□□ -0.33
PDGFC-202ENST00000422544 ZNF772Q68DY9 489 aaPredicted RBP12.97□□□□□ -0.33
PDGFC-202ENST00000422544 CABP1Q9NZU7 370 aa12.97□□□□□ -0.33
PDGFC-202ENST00000422544 FMN2Q9NZ56 1722 aa12.96□□□□□ -0.33
PDGFC-202ENST00000422544 AFF2P51816 1311 aa12.96□□□□□ -0.33
PDGFC-202ENST00000422544 NGDNQ8NEJ9 315 aaKnown RBP12.96□□□□□ -0.33
PDGFC-202ENST00000422544 PLEKHG3A1L390 1219 aa12.95□□□□□ -0.34
PDGFC-202ENST00000422544 RXRBP28702 533 aa12.95□□□□□ -0.34
PDGFC-202ENST00000422544 PSME1Q06323 249 aa12.95□□□□□ -0.34
PDGFC-202ENST00000422544 PUS7Q96PZ0 661 aaKnown RBP12.95□□□□□ -0.34
PDGFC-202ENST00000422544 ATP7BP35670 1465 aa12.95□□□□□ -0.34
PDGFC-202ENST00000422544 NPHP3Q7Z494 1330 aa12.94□□□□□ -0.34
PDGFC-202ENST00000422544 KRT28Q7Z3Y7 464 aa12.94□□□□□ -0.34
PDGFC-202ENST00000422544 TMC1Q8TDI8 760 aa12.94□□□□□ -0.34
PDGFC-202ENST00000422544 ATAD2Q6PL18 1390 aa12.94□□□□□ -0.34
PDGFC-202ENST00000422544 ACEP12821 1306 aa12.93□□□□□ -0.34
PDGFC-202ENST00000422544 SOS2Q07890 1332 aaPredicted RBP12.93□□□□□ -0.34
PDGFC-202ENST00000422544 USP32Q8NFA0 1604 aa12.93□□□□□ -0.34
PDGFC-202ENST00000422544 C11orf95C9JLR9 678 aaPredicted RBP12.93□□□□□ -0.34
PDGFC-202ENST00000422544 MAPK8IP2Q13387 824 aaPredicted RBP12.93□□□□□ -0.34
PDGFC-202ENST00000422544 CDCA8Q53HL2 280 aa12.93□□□□□ -0.34
PDGFC-202ENST00000422544 POLR3GLQ9BT43 218 aa12.93□□□□□ -0.34
PDGFC-202ENST00000422544 SLC12A5Q9H2X9 1139 aa12.93□□□□□ -0.34
PDGFC-202ENST00000422544 PPIP5K1Q6PFW1 1433 aa12.93□□□□□ -0.34
PDGFC-202ENST00000422544 NUTM2BA6NNL0 878 aaPredicted RBP12.91□□□□□ -0.34
PDGFC-202ENST00000422544 NUTM2EB1AL46 878 aaPredicted RBP12.91□□□□□ -0.34
PDGFC-202ENST00000422544 NUTM2AQ8IVF1 878 aaPredicted RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms