RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 PTPRTO14522 1441 aa27.08■■□□□ 1.92
USP48-205ENST00000421625 STAC3Q96MF2 364 aa27.08■■□□□ 1.92
USP48-205ENST00000421625 SHPRHQ149N8 1683 aa27.07■■□□□ 1.92
USP48-205ENST00000421625 PANK2Q9BZ23 570 aa27.07■■□□□ 1.92
USP48-205ENST00000421625 GOLGA6L3A6NEY3 463 aa27.06■■□□□ 1.92
USP48-205ENST00000421625 MCM4P33991 863 aa27.06■■□□□ 1.92
USP48-205ENST00000421625 TCP11L2Q8N4U5 519 aa27.06■■□□□ 1.92
USP48-205ENST00000421625 ZMYM3Q14202 1370 aa27.05■■□□□ 1.92
USP48-205ENST00000421625 RUNDC1Q96C34 613 aa27.05■■□□□ 1.92
USP48-205ENST00000421625 FSD2A1L4K1 749 aa27.04■■□□□ 1.92
USP48-205ENST00000421625 RWDD1Q9H446 243 aaPredicted RBP27.04■■□□□ 1.92
USP48-205ENST00000421625 ADGRL1O94910 1474 aa27.04■■□□□ 1.92
USP48-205ENST00000421625 AAMPQ13685 434 aa27.03■■□□□ 1.92
USP48-205ENST00000421625 KIAA1210Q9ULL0 1709 aa27.03■■□□□ 1.92
USP48-205ENST00000421625 IQSEC2Q5JU85 1478 aa27.02■■□□□ 1.92
USP48-205ENST00000421625 ADGRF5Q8IZF2 1346 aa27.01■■□□□ 1.91
USP48-205ENST00000421625 ABCA9Q8IUA7 1624 aa27.01■■□□□ 1.91
USP48-205ENST00000421625 CYB5RLQ6IPT4 315 aa27.01■■□□□ 1.91
USP48-205ENST00000421625 MORC1Q86VD1 984 aa27.01■■□□□ 1.91
USP48-205ENST00000421625 PHF23Q9BUL5 403 aaPredicted RBP27.01■■□□□ 1.91
USP48-205ENST00000421625 ABCA6Q8N139 1617 aa27■■□□□ 1.91
USP48-205ENST00000421625 RTEL1-TNFRSF6BF6WH68 1400 aa27■■□□□ 1.91
USP48-205ENST00000421625 MFAP1P55081 439 aaKnown RBP26.99■■□□□ 1.91
USP48-205ENST00000421625 NSD3Q9BZ95 1437 aa26.99■■□□□ 1.91
USP48-205ENST00000421625 KIF3BO15066 747 aa26.98■■□□□ 1.91
USP48-205ENST00000421625 C22orf23Q9BZE7 217 aa26.98■■□□□ 1.91
USP48-205ENST00000421625 ZFYVE16Q7Z3T8 1539 aa26.98■■□□□ 1.91
USP48-205ENST00000421625 ARAP3Q8WWN8 1544 aa26.98■■□□□ 1.91
USP48-205ENST00000421625 WDR63Q8IWG1 891 aa26.98■■□□□ 1.91
USP48-205ENST00000421625 MVPQ14764 893 aaKnown RBP26.96■■□□□ 1.91
USP48-205ENST00000421625 TRAK2O60296 914 aa26.96■■□□□ 1.91
USP48-205ENST00000421625 CHMP5Q9NZZ3 219 aa26.96■■□□□ 1.91
USP48-205ENST00000421625 UGGT1Q9NYU2 1555 aa26.96■■□□□ 1.91
USP48-205ENST00000421625 MAP3K4Q9Y6R4 1608 aa26.96■■□□□ 1.91
USP48-205ENST00000421625 SLC24A1O60721 1099 aa26.94■■□□□ 1.9
USP48-205ENST00000421625 CD109Q6YHK3 1445 aa26.93■■□□□ 1.9
USP48-205ENST00000421625 TET3O43151 1660 aa26.93■■□□□ 1.9
USP48-205ENST00000421625 NAP1L5Q96NT1 182 aaPredicted RBP26.92■■□□□ 1.9
USP48-205ENST00000421625 SLC12A5Q9H2X9 1139 aa26.92■■□□□ 1.9
USP48-205ENST00000421625 ATP7AQ04656 1500 aa26.91■■□□□ 1.9
USP48-205ENST00000421625 MTHFSP49914 203 aa26.9■■□□□ 1.9
USP48-205ENST00000421625 FTSJ3Q8IY81 847 aaKnown RBP26.9■■□□□ 1.9
USP48-205ENST00000421625 PNNQ9H307 717 aaKnown RBP26.9■■□□□ 1.9
USP48-205ENST00000421625 DEPDC5O75140 1603 aa26.9■■□□□ 1.9
USP48-205ENST00000421625 CLCN1P35523 988 aa26.89■■□□□ 1.9
USP48-205ENST00000421625 MYOM2P54296 1465 aa26.89■■□□□ 1.9
USP48-205ENST00000421625 ZKSCAN2Q63HK3 967 aa26.89■■□□□ 1.9
USP48-205ENST00000421625 DZIP1LQ8IYY4 767 aaKnown RBP26.89■■□□□ 1.9
USP48-205ENST00000421625 CCDC27Q2M243 656 aa26.88■■□□□ 1.89
USP48-205ENST00000421625 MYH16Q9H6N6 1097 aa26.88■■□□□ 1.89
USP48-205ENST00000421625 ZNF692Q9BU19 519 aaPredicted RBP26.87■■□□□ 1.89
USP48-205ENST00000421625 ZNF518AQ6AHZ1 1483 aa26.86■■□□□ 1.89
USP48-205ENST00000421625 KANK1Q14678 1352 aa26.86■■□□□ 1.89
USP48-205ENST00000421625 TSR2Q969E8 191 aaKnown RBP26.86■■□□□ 1.89
USP48-205ENST00000421625 MYO3AQ8NEV4 1616 aa26.86■■□□□ 1.89
USP48-205ENST00000421625 MRE11P49959 708 aa26.85■■□□□ 1.89
USP48-205ENST00000421625 SBNO2Q9Y2G9 1366 aa26.85■■□□□ 1.89
USP48-205ENST00000421625 RAPGEF3O95398 923 aa26.85■■□□□ 1.89
USP48-205ENST00000421625 HSCBQ8IWL3 235 aa26.85■■□□□ 1.89
USP48-205ENST00000421625 TRAK1Q9UPV9 953 aa26.84■■□□□ 1.89
USP48-205ENST00000421625 INO80Q9ULG1 1556 aaPredicted RBP26.82■■□□□ 1.88
USP48-205ENST00000421625 GRPEL1Q9HAV7 217 aa26.82■■□□□ 1.88
USP48-205ENST00000421625 SMC4Q9NTJ3 1288 aa26.82■■□□□ 1.88
USP48-205ENST00000421625 NEURL4Q96JN8 1562 aa26.81■■□□□ 1.88
USP48-205ENST00000421625 U2AF1L5P0DN76 240 aaPredicted RBP26.81■■□□□ 1.88
USP48-205ENST00000421625 TRIM27P14373 513 aa26.81■■□□□ 1.88
USP48-205ENST00000421625 U2AF1Q01081 240 aaKnown RBP eCLIP26.81■■□□□ 1.888e-7■■■■□ 20.6
USP48-205ENST00000421625 CFAP53Q96M91 514 aa26.81■■□□□ 1.88
USP48-205ENST00000421625 VWDEQ8N2E2 1590 aa26.81■■□□□ 1.88
USP48-205ENST00000421625 ITPRIPQ8IWB1 547 aa26.8■■□□□ 1.88
USP48-205ENST00000421625 MROH2AA6NES4 1674 aa26.8■■□□□ 1.88
USP48-205ENST00000421625 DDX11L8A8MPP1 907 aa26.8■■□□□ 1.88
USP48-205ENST00000421625 HDAC1Q13547 482 aaPredicted RBP26.8■■□□□ 1.88
USP48-205ENST00000421625 IFT172Q9UG01 1749 aa26.8■■□□□ 1.88
USP48-205ENST00000421625 KIF1BO60333 1816 aa26.79■■□□□ 1.88
USP48-205ENST00000421625 EXOSC9Q06265 439 aaKnown RBP26.79■■□□□ 1.88
USP48-205ENST00000421625 PKNOX2Q96KN3 472 aa26.78■■□□□ 1.88
USP48-205ENST00000421625 DDIT3P35638 169 aa26.77■■□□□ 1.88
USP48-205ENST00000421625 NCOA3Q9Y6Q9 1424 aa26.77■■□□□ 1.88
USP48-205ENST00000421625 ERBB4Q15303 1308 aa26.77■■□□□ 1.88
USP48-205ENST00000421625 GGT6Q6P531 493 aa26.76■■□□□ 1.87
USP48-205ENST00000421625 SSH1Q8WYL5 1049 aa26.76■■□□□ 1.87
USP48-205ENST00000421625 NOS1P29475 1434 aa26.76■■□□□ 1.87
USP48-205ENST00000421625 NRXN1Q9ULB1 1477 aa26.76■■□□□ 1.87
USP48-205ENST00000421625 SMC5Q8IY18 1101 aa26.75■■□□□ 1.87
USP48-205ENST00000421625 DDX19BQ9UMR2 479 aa26.75■■□□□ 1.87
USP48-205ENST00000421625 QRICH2Q9H0J4 1663 aa26.74■■□□□ 1.87
USP48-205ENST00000421625 TNPO1Q92973 898 aaKnown RBP26.74■■□□□ 1.87
USP48-205ENST00000421625 KIDINS220Q9ULH0 1771 aa26.74■■□□□ 1.87
USP48-205ENST00000421625 ADGRB2O60241 1585 aa26.73■■□□□ 1.87
USP48-205ENST00000421625 ZC3H13Q5T200 1668 aaKnown RBP26.73■■□□□ 1.87
USP48-205ENST00000421625 ATF7IPQ6VMQ6 1270 aa26.73■■□□□ 1.87
USP48-205ENST00000421625 ESPNB1AK53 854 aa26.72■■□□□ 1.87
USP48-205ENST00000421625 CHGAP10645 457 aaKnown RBP26.72■■□□□ 1.87
USP48-205ENST00000421625 TMEM132EQ6IEE7 984 aa26.72■■□□□ 1.87
USP48-205ENST00000421625 NOB1Q9ULX3 412 aaKnown RBP26.72■■□□□ 1.87
USP48-205ENST00000421625 GAS2L3Q86XJ1 694 aa26.72■■□□□ 1.87
USP48-205ENST00000421625 TMEM57Q8N5G2 664 aa26.71■■□□□ 1.87
USP48-205ENST00000421625 POGZQ7Z3K3 1410 aa26.71■■□□□ 1.87
USP48-205ENST00000421625 MROH1Q8NDA8 1641 aa26.71■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms