RNA–Protein interactions for RNA: ENST00000418258.5

PTCH1-205, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,815 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-205ENST00000418258 DHX57Q6P158 1386 aaKnown RBP13.6□□□□□ -0.23
PTCH1-205ENST00000418258 CRBNQ96SW2 442 aa13.6□□□□□ -0.23
PTCH1-205ENST00000418258 FAM161AQ3B820 660 aa13.6□□□□□ -0.23
PTCH1-205ENST00000418258 ZFYVE27Q5T4F4 411 aa13.6□□□□□ -0.23
PTCH1-205ENST00000418258 API5Q9BZZ5 524 aaKnown RBP13.59□□□□□ -0.23
PTCH1-205ENST00000418258 GPS2Q13227 327 aa13.59□□□□□ -0.23
PTCH1-205ENST00000418258 ESCO1Q5FWF5 840 aa13.59□□□□□ -0.23
PTCH1-205ENST00000418258 GPRASP1Q5JY77 1395 aa13.58□□□□□ -0.24
PTCH1-205ENST00000418258 VPS37CA5D8V6 355 aaPredicted RBP13.58□□□□□ -0.24
PTCH1-205ENST00000418258 SKOR2Q2VWA4 1001 aaPredicted RBP13.58□□□□□ -0.24
PTCH1-205ENST00000418258 HSP90AB4PQ58FF6 505 aa13.58□□□□□ -0.24
PTCH1-205ENST00000418258 HOMER1Q86YM7 354 aa13.58□□□□□ -0.24
PTCH1-205ENST00000418258 XBP1P17861 261 aa13.57□□□□□ -0.24
PTCH1-205ENST00000418258 NLRP6P59044 892 aa13.57□□□□□ -0.24
PTCH1-205ENST00000418258 DZIP1LQ8IYY4 767 aaKnown RBP13.57□□□□□ -0.24
PTCH1-205ENST00000418258 ARHGAP5Q13017 1502 aa13.57□□□□□ -0.24
PTCH1-205ENST00000418258 SMARCA4P51532 1647 aa13.57□□□□□ -0.24
PTCH1-205ENST00000418258 KDM4AO75164 1064 aa13.57□□□□□ -0.24
PTCH1-205ENST00000418258 RBM42Q9BTD8 480 aaKnown RBP13.57□□□□□ -0.24
PTCH1-205ENST00000418258 NUTM2BA6NNL0 878 aaPredicted RBP13.57□□□□□ -0.24
PTCH1-205ENST00000418258 NUTM2EB1AL46 878 aaPredicted RBP13.57□□□□□ -0.24
PTCH1-205ENST00000418258 NUTM2AQ8IVF1 878 aaPredicted RBP13.57□□□□□ -0.24
PTCH1-205ENST00000418258 SMC3Q9UQE7 1217 aa13.57□□□□□ -0.24
PTCH1-205ENST00000418258 RUNDC1Q96C34 613 aa13.56□□□□□ -0.24
PTCH1-205ENST00000418258 SMG6Q86US8 1419 aaKnown RBP13.56□□□□□ -0.24
PTCH1-205ENST00000418258 SASS6Q6UVJ0 657 aa13.56□□□□□ -0.24
PTCH1-205ENST00000418258 PAF1Q8N7H5 531 aa13.56□□□□□ -0.24
PTCH1-205ENST00000418258 INTS3Q68E01 1043 aaKnown RBP13.56□□□□□ -0.24
PTCH1-205ENST00000418258 RRP1P56182 461 aaKnown RBP13.55□□□□□ -0.24
PTCH1-205ENST00000418258 UBTFL1P0CB47 393 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-205ENST00000418258 CABP2Q9NPB3 220 aa13.55□□□□□ -0.24
PTCH1-205ENST00000418258 NINLQ9Y2I6 1382 aa13.55□□□□□ -0.24
PTCH1-205ENST00000418258 GNAI1P63096 354 aa13.55□□□□□ -0.24
PTCH1-205ENST00000418258 TBC1D2BQ9UPU7 963 aa13.55□□□□□ -0.24
PTCH1-205ENST00000418258 ATP2B2Q01814 1243 aa13.54□□□□□ -0.24
PTCH1-205ENST00000418258 SLC3A2P08195 630 aaKnown RBP13.54□□□□□ -0.24
PTCH1-205ENST00000418258 HSP90AB2PQ58FF8 381 aa13.54□□□□□ -0.24
PTCH1-205ENST00000418258 GAPVD1Q14C86 1478 aa13.54□□□□□ -0.24
PTCH1-205ENST00000418258 SART3Q15020 963 aaKnown RBP13.54□□□□□ -0.24
PTCH1-205ENST00000418258 OFD1O75665 1012 aa13.53□□□□□ -0.24
PTCH1-205ENST00000418258 PIP4K2BP78356 416 aa13.52□□□□□ -0.24
PTCH1-205ENST00000418258 PROSER2Q86WR7 435 aaPredicted RBP13.52□□□□□ -0.25
PTCH1-205ENST00000418258 EXOC6Q8TAG9 804 aa13.52□□□□□ -0.25
PTCH1-205ENST00000418258 CNNM1Q9NRU3 951 aa13.52□□□□□ -0.25
PTCH1-205ENST00000418258 GGNBP2Q9H3C7 697 aa13.52□□□□□ -0.25
PTCH1-205ENST00000418258 OLFM4Q6UX06 510 aa13.51□□□□□ -0.25
PTCH1-205ENST00000418258 CNTROBQ8N137 903 aa13.51□□□□□ -0.25
PTCH1-205ENST00000418258 RUFY1Q96T51 708 aa13.51□□□□□ -0.25
PTCH1-205ENST00000418258 CCDC73Q6ZRK6 1079 aa13.51□□□□□ -0.25
PTCH1-205ENST00000418258 RRP12Q5JTH9 1297 aaKnown RBP13.51□□□□□ -0.25
PTCH1-205ENST00000418258 CDK5RAP3Q96JB5 506 aa13.51□□□□□ -0.25
PTCH1-205ENST00000418258 LNPKQ9C0E8 428 aa13.51□□□□□ -0.25
PTCH1-205ENST00000418258 TMEM132EQ6IEE7 984 aa13.5□□□□□ -0.25
PTCH1-205ENST00000418258 PDE4AP27815 886 aa13.5□□□□□ -0.25
PTCH1-205ENST00000418258 RBM5P52756 815 aaKnown RBP eCLIP13.5□□□□□ -0.25
PTCH1-205ENST00000418258 CUX1P39880 1505 aa13.5□□□□□ -0.25
PTCH1-205ENST00000418258 TXNDC2Q86VQ3 553 aa13.5□□□□□ -0.25
PTCH1-205ENST00000418258 DNAJC2Q99543 621 aaKnown RBP13.5□□□□□ -0.25
PTCH1-205ENST00000418258 CCDC30Q5VVM6 783 aa13.5□□□□□ -0.25
PTCH1-205ENST00000418258 FSD1Q9BTV5 496 aa13.49□□□□□ -0.25
PTCH1-205ENST00000418258 PLEKHO1Q53GL0 409 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-205ENST00000418258 PSMA5P28066 241 aa13.49□□□□□ -0.25
PTCH1-205ENST00000418258 DDX54Q8TDD1 881 aaKnown RBP13.49□□□□□ -0.25
PTCH1-205ENST00000418258 GNL3LQ9NVN8 582 aaKnown RBP13.49□□□□□ -0.25
PTCH1-205ENST00000418258 TOM1L2Q6ZVM7 507 aa13.48□□□□□ -0.25
PTCH1-205ENST00000418258 TTC39AQ5SRH9 613 aa13.48□□□□□ -0.25
PTCH1-205ENST00000418258 MYOM3Q5VTT5 1437 aa13.48□□□□□ -0.25
PTCH1-205ENST00000418258 CCDC173Q0VFZ6 552 aa13.48□□□□□ -0.25
PTCH1-205ENST00000418258 RDXP35241 583 aaKnown RBP13.48□□□□□ -0.25
PTCH1-205ENST00000418258 PDILTQ8N807 584 aa13.48□□□□□ -0.25
PTCH1-205ENST00000418258 NAT10Q9H0A0 1025 aaKnown RBP13.47□□□□□ -0.25
PTCH1-205ENST00000418258 ZBED9Q6R2W3 1325 aa13.47□□□□□ -0.25
PTCH1-205ENST00000418258 CABP4P57796 275 aa13.47□□□□□ -0.25
PTCH1-205ENST00000418258 TATP17735 454 aaPredicted RBP13.47□□□□□ -0.25
PTCH1-205ENST00000418258 STK11IPQ8N1F8 1099 aa13.47□□□□□ -0.25
PTCH1-205ENST00000418258 CLASRPQ8N2M8 674 aaKnown RBP13.47□□□□□ -0.25
PTCH1-205ENST00000418258 AK7Q96M32 723 aa13.47□□□□□ -0.25
PTCH1-205ENST00000418258 PRKRIP1Q9H875 184 aaPredicted RBP13.47□□□□□ -0.25
PTCH1-205ENST00000418258 GAS2L2Q8NHY3 880 aa13.47□□□□□ -0.25
PTCH1-205ENST00000418258 ZNF428Q96B54 188 aa13.46□□□□□ -0.25
PTCH1-205ENST00000418258 KRT18P05783 430 aaKnown RBP13.46□□□□□ -0.25
PTCH1-205ENST00000418258 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-205ENST00000418258 SYCP1Q15431 976 aa13.46□□□□□ -0.26
PTCH1-205ENST00000418258 RRBP1Q9P2E9 1410 aaKnown RBP13.46□□□□□ -0.26
PTCH1-205ENST00000418258 TXLNAP40222 546 aa13.45□□□□□ -0.26
PTCH1-205ENST00000418258 ATP2B1P20020 1258 aa13.45□□□□□ -0.26
PTCH1-205ENST00000418258 TTLL5Q6EMB2 1281 aa13.45□□□□□ -0.26
PTCH1-205ENST00000418258 SDF4Q9BRK5 362 aa13.45□□□□□ -0.26
PTCH1-205ENST00000418258 CDR1P51861 262 aa13.45□□□□□ -0.26
PTCH1-205ENST00000418258 CCDC158Q5M9N0 1113 aa13.45□□□□□ -0.26
PTCH1-205ENST00000418258 SURF6O75683 361 aaKnown RBP13.44□□□□□ -0.26
PTCH1-205ENST00000418258 CAGE1Q8TC20 777 aa13.44□□□□□ -0.26
PTCH1-205ENST00000418258 ATAD2BQ9ULI0 1458 aa13.44□□□□□ -0.26
PTCH1-205ENST00000418258 TEX35Q5T0J7 233 aa13.44□□□□□ -0.26
PTCH1-205ENST00000418258 NUCB2P80303 420 aa13.43□□□□□ -0.26
PTCH1-205ENST00000418258 BCL11BQ9C0K0 894 aaPredicted RBP13.43□□□□□ -0.26
PTCH1-205ENST00000418258 FGD5Q6ZNL6 1462 aa13.43□□□□□ -0.26
PTCH1-205ENST00000418258 MYL6BP14649 208 aa13.43□□□□□ -0.26
PTCH1-205ENST00000418258 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.43□□□□□ -0.26
PTCH1-205ENST00000418258 MAGEC2Q9UBF1 373 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms