RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 PLCH2O75038 1416 aa10.13□□□□□ -0.79
HMGXB4-202ENST00000418170 RBM10P98175 930 aaKnown RBP10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 APAF1O14727 1248 aa10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 CANXP27824 592 aaKnown RBP10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 AMER1Q5JTC6 1135 aaPredicted RBP10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 CCDC146Q8IYE0 955 aa10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 KNSTRNQ9Y448 316 aa10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 CCDC141Q6ZP82 1450 aa10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 SKOR2Q2VWA4 1001 aaPredicted RBP10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 NGEFQ8N5V2 710 aa10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 PCDHB15Q9Y5E8 787 aa10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 RIMBP3CA6NJZ7 1639 aa10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 RIMBP3BA6NNM3 1639 aa10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 RIMBP3Q9UFD9 1639 aa10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 A2MP01023 1474 aa10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 PLA2R1Q13018 1463 aa10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 HSCBQ8IWL3 235 aa10.12□□□□□ -0.79
HMGXB4-202ENST00000418170 FRMPD1Q5SYB0 1578 aa10.11□□□□□ -0.79
HMGXB4-202ENST00000418170 RICTORQ6R327 1708 aa10.11□□□□□ -0.79
HMGXB4-202ENST00000418170 FAM135AQ9P2D6 1515 aa10.11□□□□□ -0.79
HMGXB4-202ENST00000418170 PTMSP20962 102 aa10.11□□□□□ -0.79
HMGXB4-202ENST00000418170 ASXL1Q8IXJ9 1541 aa10.1□□□□□ -0.79
HMGXB4-202ENST00000418170 TNPO1Q92973 898 aaKnown RBP10.1□□□□□ -0.79
HMGXB4-202ENST00000418170 ZNF777Q9ULD5 760 aaPredicted RBP10.1□□□□□ -0.79
HMGXB4-202ENST00000418170 DMRT2Q9Y5R5 561 aa10.1□□□□□ -0.79
HMGXB4-202ENST00000418170 SYNMO15061 1565 aa10.1□□□□□ -0.79
HMGXB4-202ENST00000418170 GBP4Q96PP9 640 aa10.1□□□□□ -0.79
HMGXB4-202ENST00000418170 CIZ1Q9ULV3 898 aaPredicted RBP10.1□□□□□ -0.79
HMGXB4-202ENST00000418170 RNF17Q9BXT8 1623 aaKnown RBP10.1□□□□□ -0.79
HMGXB4-202ENST00000418170 IFT172Q9UG01 1749 aa10.09□□□□□ -0.79
HMGXB4-202ENST00000418170 TRAPPC8Q9Y2L5 1435 aa10.09□□□□□ -0.79
HMGXB4-202ENST00000418170 ARHGAP5Q13017 1502 aa10.09□□□□□ -0.79
HMGXB4-202ENST00000418170 MSNP26038 577 aaKnown RBP10.09□□□□□ -0.79
HMGXB4-202ENST00000418170 NASPP49321 788 aaPredicted RBP10.09□□□□□ -0.79
HMGXB4-202ENST00000418170 MFAP1P55081 439 aaKnown RBP10.09□□□□□ -0.79
HMGXB4-202ENST00000418170 SMAP1Q8IYB5 467 aaPredicted RBP10.09□□□□□ -0.79
HMGXB4-202ENST00000418170 RWDD1Q9H446 243 aaPredicted RBP10.09□□□□□ -0.79
HMGXB4-202ENST00000418170 SMC5Q8IY18 1101 aa10.09□□□□□ -0.79
HMGXB4-202ENST00000418170 IBTKQ9P2D0 1353 aaPredicted RBP10.09□□□□□ -0.79
HMGXB4-202ENST00000418170 NPC1L1Q9UHC9 1359 aa10.09□□□□□ -0.79
HMGXB4-202ENST00000418170 KIF13AQ9H1H9 1805 aa10.08□□□□□ -0.8
HMGXB4-202ENST00000418170 RAB3GAP1Q15042 981 aa10.08□□□□□ -0.8
HMGXB4-202ENST00000418170 SNX21Q969T3 373 aa10.08□□□□□ -0.8
HMGXB4-202ENST00000418170 FAM13BQ9NYF5 915 aa10.08□□□□□ -0.8
HMGXB4-202ENST00000418170 CEP152O94986 1710 aa10.08□□□□□ -0.8
HMGXB4-202ENST00000418170 MTERF4Q7Z6M4 381 aaKnown RBP10.07□□□□□ -0.8
HMGXB4-202ENST00000418170 ANP32BQ92688 251 aaKnown RBP10.07□□□□□ -0.8
HMGXB4-202ENST00000418170 RGL3Q3MIN7 710 aa10.07□□□□□ -0.8
HMGXB4-202ENST00000418170 HS1BP3Q53T59 392 aa10.07□□□□□ -0.8
HMGXB4-202ENST00000418170 RLBP1P12271 317 aa10.07□□□□□ -0.8
HMGXB4-202ENST00000418170 RARSP54136 660 aaKnown RBP10.06□□□□□ -0.8
HMGXB4-202ENST00000418170 MYOM1P52179 1685 aa10.06□□□□□ -0.8
HMGXB4-202ENST00000418170 ASXL2Q76L83 1435 aa10.06□□□□□ -0.8
HMGXB4-202ENST00000418170 ABCA6Q8N139 1617 aa10.06□□□□□ -0.8
HMGXB4-202ENST00000418170 A0A0U1RQG5 324 aaPredicted RBP10.06□□□□□ -0.8
HMGXB4-202ENST00000418170 ZNF500O60304 480 aaPredicted RBP10.06□□□□□ -0.8
HMGXB4-202ENST00000418170 RBM25P49756 843 aaKnown RBP10.06□□□□□ -0.8
HMGXB4-202ENST00000418170 SPHKAPQ2M3C7 1700 aa10.06□□□□□ -0.8
HMGXB4-202ENST00000418170 R3HCC1Q9Y3T6 440 aaKnown RBP10.06□□□□□ -0.8
HMGXB4-202ENST00000418170 IQGAP1P46940 1657 aa10.05□□□□□ -0.8
HMGXB4-202ENST00000418170 WWC1Q8IX03 1113 aa10.05□□□□□ -0.8
HMGXB4-202ENST00000418170 NOL7Q9UMY1 257 aaKnown RBP10.04□□□□□ -0.8
HMGXB4-202ENST00000418170 MROH2AA6NES4 1674 aa10.04□□□□□ -0.8
HMGXB4-202ENST00000418170 UQCRHLA0A096LP55 91 aa10.04□□□□□ -0.8
HMGXB4-202ENST00000418170 DYNC1I1O14576 645 aa10.04□□□□□ -0.8
HMGXB4-202ENST00000418170 UQCRHP07919 91 aa10.04□□□□□ -0.8
HMGXB4-202ENST00000418170 TNNQ9UQP3 1299 aa10.04□□□□□ -0.8
HMGXB4-202ENST00000418170 DUOX2Q9NRD8 1548 aa10.04□□□□□ -0.8
HMGXB4-202ENST00000418170 ATP10AO60312 1499 aa10.03□□□□□ -0.8
HMGXB4-202ENST00000418170 TSPY4P0CV99 314 aa10.03□□□□□ -0.8
HMGXB4-202ENST00000418170 TSPY10P0CW01 314 aa10.03□□□□□ -0.8
HMGXB4-202ENST00000418170 KLHL40Q2TBA0 621 aa10.03□□□□□ -0.8
HMGXB4-202ENST00000418170 HSP90AB1P08238 724 aaKnown RBP10.03□□□□□ -0.8
HMGXB4-202ENST00000418170 HNRNPMP52272 730 aaKnown RBP eCLIP10.03□□□□□ -0.8
HMGXB4-202ENST00000418170 CDCA8Q53HL2 280 aa10.03□□□□□ -0.8
HMGXB4-202ENST00000418170 CLEC17AQ6ZS10 378 aa10.03□□□□□ -0.8
HMGXB4-202ENST00000418170 PLEKHD1A6NEE1 506 aa10.03□□□□□ -0.8
HMGXB4-202ENST00000418170 ARHGAP31Q2M1Z3 1444 aa10.02□□□□□ -0.8
HMGXB4-202ENST00000418170 ATP7AQ04656 1500 aa10.02□□□□□ -0.81
HMGXB4-202ENST00000418170 FGD1P98174 961 aa10.02□□□□□ -0.81
HMGXB4-202ENST00000418170 TET3O43151 1660 aa10.02□□□□□ -0.81
HMGXB4-202ENST00000418170 GLI2P10070 1586 aa10.02□□□□□ -0.81
HMGXB4-202ENST00000418170 ZNF445P59923 1031 aa10.02□□□□□ -0.81
HMGXB4-202ENST00000418170 UTP14CQ5TAP6 766 aaKnown RBP10.02□□□□□ -0.81
HMGXB4-202ENST00000418170 PDLIM2Q96JY6 352 aa10.02□□□□□ -0.81
HMGXB4-202ENST00000418170 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.02□□□□□ -0.81
HMGXB4-202ENST00000418170 DIP2BQ9P265 1576 aa10.01□□□□□ -0.81
HMGXB4-202ENST00000418170 GOLGA6L22H0YM25 854 aa10.01□□□□□ -0.81
HMGXB4-202ENST00000418170 MVPQ14764 893 aaKnown RBP10.01□□□□□ -0.81
HMGXB4-202ENST00000418170 CLTCL1P53675 1640 aa10.01□□□□□ -0.81
HMGXB4-202ENST00000418170 CSPP1Q1MSJ5 1256 aa10.01□□□□□ -0.81
HMGXB4-202ENST00000418170 XPCQ01831 940 aaPredicted RBP10□□□□□ -0.81
HMGXB4-202ENST00000418170 HDAC1Q13547 482 aaPredicted RBP10□□□□□ -0.81
HMGXB4-202ENST00000418170 DDX49Q9Y6V7 483 aaKnown RBP10□□□□□ -0.81
HMGXB4-202ENST00000418170 DMTNQ08495 405 aa10□□□□□ -0.81
HMGXB4-202ENST00000418170 MCM5P33992 734 aa9.99□□□□□ -0.81
HMGXB4-202ENST00000418170 FANCAO15360 1455 aa9.99□□□□□ -0.81
HMGXB4-202ENST00000418170 ZKSCAN5Q9Y2L8 839 aa9.99□□□□□ -0.81
HMGXB4-202ENST00000418170 KDM5AP29375 1690 aaKnown RBP9.99□□□□□ -0.81
HMGXB4-202ENST00000418170 SHPRHQ149N8 1683 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms