RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 CENPJQ9HC77 1338 aaPredicted RBP12.65□□□□□ -0.39
CD44-206ENST00000415148 KIDINS220Q9ULH0 1771 aa12.64□□□□□ -0.39
CD44-206ENST00000415148 ZC3H13Q5T200 1668 aaKnown RBP12.64□□□□□ -0.39
CD44-206ENST00000415148 WWC1Q8IX03 1113 aa12.64□□□□□ -0.39
CD44-206ENST00000415148 RPGRIP1LQ68CZ1 1315 aa12.64□□□□□ -0.39
CD44-206ENST00000415148 SHPRHQ149N8 1683 aa12.64□□□□□ -0.39
CD44-206ENST00000415148 VIRMAQ69YN4 1812 aaKnown RBP12.63□□□□□ -0.39
CD44-206ENST00000415148 RUNDC1Q96C34 613 aa12.63□□□□□ -0.39
CD44-206ENST00000415148 C14orf93Q9H972 538 aaKnown RBP12.63□□□□□ -0.39
CD44-206ENST00000415148 ZNF518AQ6AHZ1 1483 aa12.62□□□□□ -0.39
CD44-206ENST00000415148 PPLO60437 1756 aa12.62□□□□□ -0.39
CD44-206ENST00000415148 WDR63Q8IWG1 891 aa12.62□□□□□ -0.39
CD44-206ENST00000415148 MAPK8IP3Q9UPT6 1336 aa12.62□□□□□ -0.39
CD44-206ENST00000415148 CCDC27Q2M243 656 aa12.62□□□□□ -0.39
CD44-206ENST00000415148 MORC1Q86VD1 984 aa12.62□□□□□ -0.39
CD44-206ENST00000415148 PHF23Q9BUL5 403 aaPredicted RBP12.62□□□□□ -0.39
CD44-206ENST00000415148 NOS1P29475 1434 aa12.61□□□□□ -0.39
CD44-206ENST00000415148 QRICH2Q9H0J4 1663 aa12.61□□□□□ -0.39
CD44-206ENST00000415148 ZMYM3Q14202 1370 aa12.61□□□□□ -0.39
CD44-206ENST00000415148 CLUAP1Q96AJ1 413 aa12.61□□□□□ -0.39
CD44-206ENST00000415148 NSD3Q9BZ95 1437 aa12.6□□□□□ -0.39
CD44-206ENST00000415148 IQSEC2Q5JU85 1478 aa12.6□□□□□ -0.39
CD44-206ENST00000415148 ADGRB1O14514 1584 aa12.6□□□□□ -0.39
CD44-206ENST00000415148 PANK1Q8TE04 598 aa12.59□□□□□ -0.39
CD44-206ENST00000415148 CFAP74Q9C0B2 1584 aa12.59□□□□□ -0.39
CD44-206ENST00000415148 PMFBP1Q8TBY8 1022 aa12.59□□□□□ -0.39
CD44-206ENST00000415148 TNNQ9UQP3 1299 aa12.59□□□□□ -0.39
CD44-206ENST00000415148 ASXL2Q76L83 1435 aa12.58□□□□□ -0.39
CD44-206ENST00000415148 NSD2O96028 1365 aa12.58□□□□□ -0.39
CD44-206ENST00000415148 CFAP53Q96M91 514 aa12.58□□□□□ -0.4
CD44-206ENST00000415148 CANXP27824 592 aaKnown RBP12.57□□□□□ -0.4
CD44-206ENST00000415148 RARSP54136 660 aaKnown RBP12.57□□□□□ -0.4
CD44-206ENST00000415148 POGKQ9P215 609 aa12.57□□□□□ -0.4
CD44-206ENST00000415148 COG6Q9Y2V7 657 aa12.57□□□□□ -0.4
CD44-206ENST00000415148 MLH3Q9UHC1 1453 aa12.57□□□□□ -0.4
CD44-206ENST00000415148 TCP11L2Q8N4U5 519 aa12.57□□□□□ -0.4
CD44-206ENST00000415148 NPATQ14207 1427 aa12.56□□□□□ -0.4
CD44-206ENST00000415148 SLC12A5Q9H2X9 1139 aa12.56□□□□□ -0.4
CD44-206ENST00000415148 TRAK1Q9UPV9 953 aa12.56□□□□□ -0.4
CD44-206ENST00000415148 NLRP1Q9C000 1473 aa12.55□□□□□ -0.4
CD44-206ENST00000415148 CT47B1P0C2W7 299 aaPredicted RBP12.55□□□□□ -0.4
CD44-206ENST00000415148 SLKQ9H2G2 1235 aaPredicted RBP12.55□□□□□ -0.4
CD44-206ENST00000415148 EVC2Q86UK5 1308 aa12.54□□□□□ -0.4
CD44-206ENST00000415148 HECW2Q9P2P5 1572 aa12.54□□□□□ -0.4
CD44-206ENST00000415148 MYH16Q9H6N6 1097 aa12.54□□□□□ -0.4
CD44-206ENST00000415148 RRP7AQ9Y3A4 280 aaKnown RBP12.54□□□□□ -0.4
CD44-206ENST00000415148 ANKRD36BQ8N2N9 1353 aa12.54□□□□□ -0.4
CD44-206ENST00000415148 RIMBP3CA6NJZ7 1639 aa12.54□□□□□ -0.4
CD44-206ENST00000415148 RIMBP3BA6NNM3 1639 aa12.54□□□□□ -0.4
CD44-206ENST00000415148 RIMBP3Q9UFD9 1639 aa12.54□□□□□ -0.4
CD44-206ENST00000415148 MTHFSP49914 203 aa12.54□□□□□ -0.4
CD44-206ENST00000415148 POGZQ7Z3K3 1410 aa12.53□□□□□ -0.4
CD44-206ENST00000415148 CHGAP10645 457 aaKnown RBP12.53□□□□□ -0.4
CD44-206ENST00000415148 NEUROD2Q15784 382 aa12.53□□□□□ -0.4
CD44-206ENST00000415148 FRMPD1Q5SYB0 1578 aa12.53□□□□□ -0.4
CD44-206ENST00000415148 GLI2P10070 1586 aa12.52□□□□□ -0.4
CD44-206ENST00000415148 VGFO15240 615 aaPredicted RBP12.52□□□□□ -0.4
CD44-206ENST00000415148 RLBP1P12271 317 aa12.52□□□□□ -0.4
CD44-206ENST00000415148 BECN1Q14457 450 aa12.52□□□□□ -0.4
CD44-206ENST00000415148 RWDD1Q9H446 243 aaPredicted RBP12.52□□□□□ -0.41
CD44-206ENST00000415148 PIK3C2BO00750 1634 aa12.52□□□□□ -0.41
CD44-206ENST00000415148 ABCC3O15438 1527 aa12.52□□□□□ -0.41
CD44-206ENST00000415148 ADGRB2O60241 1585 aa12.52□□□□□ -0.41
CD44-206ENST00000415148 BCL2L13Q9BXK5 485 aa12.51□□□□□ -0.41
CD44-206ENST00000415148 PCDHB15Q9Y5E8 787 aa12.51□□□□□ -0.41
CD44-206ENST00000415148 ARHGEF28Q8N1W1 1705 aaKnown RBP12.51□□□□□ -0.41
CD44-206ENST00000415148 TNNT2P45379 298 aaPredicted RBP12.51□□□□□ -0.41
CD44-206ENST00000415148 CAMSAP1Q5T5Y3 1602 aa12.51□□□□□ -0.41
CD44-206ENST00000415148 ZFYVE9O95405 1425 aa12.5□□□□□ -0.41
CD44-206ENST00000415148 TULP4Q9NRJ4 1543 aa12.5□□□□□ -0.41
CD44-206ENST00000415148 TMEM132EQ6IEE7 984 aa12.49□□□□□ -0.41
CD44-206ENST00000415148 NEXMIFQ5QGS0 1516 aa12.49□□□□□ -0.41
CD44-206ENST00000415148 CD109Q6YHK3 1445 aa12.49□□□□□ -0.41
CD44-206ENST00000415148 NPM1P06748 294 aaKnown RBP eCLIP12.49□□□□□ -0.41
CD44-206ENST00000415148 UPF2Q9HAU5 1272 aaKnown RBP12.49□□□□□ -0.41
CD44-206ENST00000415148 ARHGAP31Q2M1Z3 1444 aa12.48□□□□□ -0.41
CD44-206ENST00000415148 GGT6Q6P531 493 aa12.48□□□□□ -0.41
CD44-206ENST00000415148 SPRYD3Q8NCJ5 442 aa12.48□□□□□ -0.41
CD44-206ENST00000415148 ANTXR1Q9H6X2 564 aa12.48□□□□□ -0.41
CD44-206ENST00000415148 EIF5BO60841 1220 aaKnown RBP12.48□□□□□ -0.41
CD44-206ENST00000415148 MVPQ14764 893 aaKnown RBP12.48□□□□□ -0.41
CD44-206ENST00000415148 ARXQ96QS3 562 aa12.48□□□□□ -0.41
CD44-206ENST00000415148 ZKSCAN2Q63HK3 967 aa12.47□□□□□ -0.41
CD44-206ENST00000415148 PDZRN3Q9UPQ7 1066 aa12.47□□□□□ -0.41
CD44-206ENST00000415148 MED14O60244 1454 aa12.47□□□□□ -0.41
CD44-206ENST00000415148 IL16Q14005 1332 aa12.47□□□□□ -0.41
CD44-206ENST00000415148 ABCC11Q96J66 1382 aa12.46□□□□□ -0.41
CD44-206ENST00000415148 SIGLEC1Q9BZZ2 1709 aa12.46□□□□□ -0.41
CD44-206ENST00000415148 U2AF1L5P0DN76 240 aaPredicted RBP12.46□□□□□ -0.41
CD44-206ENST00000415148 U2AF1Q01081 240 aaKnown RBP eCLIP12.46□□□□□ -0.41
CD44-206ENST00000415148 RRAGDQ9NQL2 400 aaPredicted RBP12.46□□□□□ -0.41
CD44-206ENST00000415148 DZIP1LQ8IYY4 767 aaKnown RBP12.45□□□□□ -0.42
CD44-206ENST00000415148 TBC1D32Q96NH3 1257 aa12.45□□□□□ -0.42
CD44-206ENST00000415148 TBC1D2Q9BYX2 928 aa12.45□□□□□ -0.42
CD44-206ENST00000415148 PLEKHF1Q96S99 279 aa12.45□□□□□ -0.42
CD44-206ENST00000415148 PNNQ9H307 717 aaKnown RBP12.45□□□□□ -0.42
CD44-206ENST00000415148 CFAP65Q6ZU64 1925 aaKnown RBP12.45□□□□□ -0.42
CD44-206ENST00000415148 ANKRD26Q9UPS8 1709 aa12.45□□□□□ -0.42
CD44-206ENST00000415148 NEO1Q92859 1461 aa12.45□□□□□ -0.42
CD44-206ENST00000415148 SLC52A1Q9NWF4 448 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms