RNA–Protein interactions for RNA: ENST00000411993.1

HDAC9-205, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 626 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-205ENST00000411993 NDUFV2P19404 249 aa11.24□□□□□ -0.61
HDAC9-205ENST00000411993 TBC1D2Q9BYX2 928 aa11.24□□□□□ -0.61
HDAC9-205ENST00000411993 C6orf229H3BNL8 230 aa11.22□□□□□ -0.61
HDAC9-205ENST00000411993 PLA2G2CQ5R387 149 aa11.22□□□□□ -0.61
HDAC9-205ENST00000411993 SYMPKQ92797 1274 aaKnown RBP11.22□□□□□ -0.61
HDAC9-205ENST00000411993 LIAT1Q6ZQX7 453 aa11.21□□□□□ -0.61
HDAC9-205ENST00000411993 EMID1Q96A84 441 aaPredicted RBP11.21□□□□□ -0.61
HDAC9-205ENST00000411993 PCDHGC3Q9UN70 934 aa11.21□□□□□ -0.61
HDAC9-205ENST00000411993 SPRYD7Q5W111 196 aa11.2□□□□□ -0.62
HDAC9-205ENST00000411993 RETREG3Q86VR2 466 aa11.2□□□□□ -0.62
HDAC9-205ENST00000411993 GFRA3O60609 400 aa11.19□□□□□ -0.62
HDAC9-205ENST00000411993 MMP16P51512 607 aa11.19□□□□□ -0.62
HDAC9-205ENST00000411993 DXOO77932 396 aaKnown RBP11.18□□□□□ -0.62
HDAC9-205ENST00000411993 LAPTM4AQ15012 233 aa11.18□□□□□ -0.62
HDAC9-205ENST00000411993 JUNDP17535 347 aa11.17□□□□□ -0.62
HDAC9-205ENST00000411993 ZNF697Q5TEC3 545 aa11.17□□□□□ -0.62
HDAC9-205ENST00000411993 RSBN1LQ6PCB5 846 aaPredicted RBP11.17□□□□□ -0.62
HDAC9-205ENST00000411993 ZNF598Q86UK7 904 aaKnown RBP11.17□□□□□ -0.62
HDAC9-205ENST00000411993 PDZRN3Q9UPQ7 1066 aa11.17□□□□□ -0.62
HDAC9-205ENST00000411993 ZBTB24O43167 697 aaPredicted RBP11.16□□□□□ -0.62
HDAC9-205ENST00000411993 RPIAP49247 311 aa11.16□□□□□ -0.62
HDAC9-205ENST00000411993 MTMR2Q13614 643 aa11.16□□□□□ -0.62
HDAC9-205ENST00000411993 CCDC24Q8N4L8 307 aa11.16□□□□□ -0.62
HDAC9-205ENST00000411993 GPBP1L1Q9HC44 474 aaPredicted RBP11.16□□□□□ -0.62
HDAC9-205ENST00000411993 GJA5P36382 358 aa11.15□□□□□ -0.62
HDAC9-205ENST00000411993 RIC3Q7Z5B4 369 aa11.15□□□□□ -0.62
HDAC9-205ENST00000411993 SPTLC1O15269 473 aa11.14□□□□□ -0.63
HDAC9-205ENST00000411993 Q6ZNB5 142 aa11.14□□□□□ -0.63
HDAC9-205ENST00000411993 KDM4CQ9H3R0 1056 aa11.14□□□□□ -0.63
HDAC9-205ENST00000411993 SPDYE5A6NIY4 337 aa11.13□□□□□ -0.63
HDAC9-205ENST00000411993 NRG2O14511 850 aaPredicted RBP11.13□□□□□ -0.63
HDAC9-205ENST00000411993 CSPP1Q1MSJ5 1256 aa11.13□□□□□ -0.63
HDAC9-205ENST00000411993 MYSM1Q5VVJ2 828 aa11.13□□□□□ -0.63
HDAC9-205ENST00000411993 CD2BP2O95400 341 aaKnown RBP11.12□□□□□ -0.63
HDAC9-205ENST00000411993 PRR7Q8TB68 274 aa11.12□□□□□ -0.63
HDAC9-205ENST00000411993 TPRNQ4KMQ1 711 aa11.11□□□□□ -0.63
HDAC9-205ENST00000411993 RSPH6AQ9H0K4 717 aa11.11□□□□□ -0.63
HDAC9-205ENST00000411993 ZBTB3Q9H5J0 574 aa11.11□□□□□ -0.63
HDAC9-205ENST00000411993 PCDHB15Q9Y5E8 787 aa11.11□□□□□ -0.63
HDAC9-205ENST00000411993 NUDT12Q9BQG2 462 aa11.1□□□□□ -0.63
HDAC9-205ENST00000411993 DDRGK1Q96HY6 314 aa11.09□□□□□ -0.63
HDAC9-205ENST00000411993 LIMD1Q9UGP4 676 aa11.09□□□□□ -0.63
HDAC9-205ENST00000411993 TNFRSF10AO00220 468 aa11.08□□□□□ -0.64
HDAC9-205ENST00000411993 CLK2P49760 499 aaKnown RBP11.08□□□□□ -0.64
HDAC9-205ENST00000411993 FOXC1Q12948 553 aa11.08□□□□□ -0.64
HDAC9-205ENST00000411993 TRIM67Q6ZTA4 783 aa11.08□□□□□ -0.64
HDAC9-205ENST00000411993 HRCP23327 699 aa11.07□□□□□ -0.64
HDAC9-205ENST00000411993 TRIM32Q13049 653 aa11.07□□□□□ -0.64
HDAC9-205ENST00000411993 PRPF38BQ5VTL8 546 aaKnown RBP11.07□□□□□ -0.64
HDAC9-205ENST00000411993 CABLES1Q8TDN4 633 aa11.07□□□□□ -0.64
HDAC9-205ENST00000411993 NUTM2BA6NNL0 878 aaPredicted RBP11.06□□□□□ -0.64
HDAC9-205ENST00000411993 NUTM2EB1AL46 878 aaPredicted RBP11.06□□□□□ -0.64
HDAC9-205ENST00000411993 CCNYL3P0C7X3 344 aa11.06□□□□□ -0.64
HDAC9-205ENST00000411993 PRR20EP86478 221 aa11.06□□□□□ -0.64
HDAC9-205ENST00000411993 PRR20CP86479 221 aa11.06□□□□□ -0.64
HDAC9-205ENST00000411993 PRR20DP86480 221 aa11.06□□□□□ -0.64
HDAC9-205ENST00000411993 PRR20BP86481 221 aa11.06□□□□□ -0.64
HDAC9-205ENST00000411993 PRR20AP86496 221 aa11.06□□□□□ -0.64
HDAC9-205ENST00000411993 NUTM2DQ5VT03 806 aaPredicted RBP11.06□□□□□ -0.64
HDAC9-205ENST00000411993 NUTM2AQ8IVF1 878 aaPredicted RBP11.06□□□□□ -0.64
HDAC9-205ENST00000411993 POLR3EQ9NVU0 708 aa11.06□□□□□ -0.64
HDAC9-205ENST00000411993 GDF9O60383 454 aa11.05□□□□□ -0.64
HDAC9-205ENST00000411993 NEUROD2Q15784 382 aa11.05□□□□□ -0.64
HDAC9-205ENST00000411993 PTPRNQ16849 979 aa11.05□□□□□ -0.64
HDAC9-205ENST00000411993 DESI1Q6ICB0 168 aa11.05□□□□□ -0.64
HDAC9-205ENST00000411993 FAM117AQ9C073 453 aa11.05□□□□□ -0.64
HDAC9-205ENST00000411993 ATP1B4Q9UN42 357 aaPredicted RBP11.05□□□□□ -0.64
HDAC9-205ENST00000411993 CFAP99D6REC4 459 aa11.04□□□□□ -0.64
HDAC9-205ENST00000411993 TUSC1Q2TAM9 212 aa11.04□□□□□ -0.64
HDAC9-205ENST00000411993 TSC1Q92574 1164 aa11.04□□□□□ -0.64
HDAC9-205ENST00000411993 QPCTQ16769 361 aa11.03□□□□□ -0.64
HDAC9-205ENST00000411993 PKD2L1Q9P0L9 805 aa11.03□□□□□ -0.64
HDAC9-205ENST00000411993 PKDCCQ504Y2 493 aa11.01□□□□□ -0.65
HDAC9-205ENST00000411993 FAM187AA6NFU0 413 aa11□□□□□ -0.65
HDAC9-205ENST00000411993 LILRB3O75022 631 aa11□□□□□ -0.65
HDAC9-205ENST00000411993 SH3D19Q5HYK7 790 aa11□□□□□ -0.65
HDAC9-205ENST00000411993 PLEKHG3A1L390 1219 aa10.99□□□□□ -0.65
HDAC9-205ENST00000411993 CTHP32929 405 aa10.99□□□□□ -0.65
HDAC9-205ENST00000411993 SKIV2LQ15477 1246 aaKnown RBP10.99□□□□□ -0.65
HDAC9-205ENST00000411993 PTCRAQ6ISU1 281 aaPredicted RBP10.99□□□□□ -0.65
HDAC9-205ENST00000411993 CYP4X1Q8N118 509 aa10.99□□□□□ -0.65
HDAC9-205ENST00000411993 EVA1BQ9NVM1 165 aa10.99□□□□□ -0.65
HDAC9-205ENST00000411993 WNT7BP56706 349 aa10.98□□□□□ -0.65
HDAC9-205ENST00000411993 KCNH2Q12809 1159 aa10.98□□□□□ -0.65
HDAC9-205ENST00000411993 LYPD8Q6UX82 237 aa10.98□□□□□ -0.65
HDAC9-205ENST00000411993 HELBQ8NG08 1087 aaPredicted RBP10.98□□□□□ -0.65
HDAC9-205ENST00000411993 UNC93B1Q9H1C4 597 aa10.98□□□□□ -0.65
HDAC9-205ENST00000411993 WNT7AO00755 349 aa10.97□□□□□ -0.65
HDAC9-205ENST00000411993 RTL5Q5HYW3 569 aaPredicted RBP10.97□□□□□ -0.65
HDAC9-205ENST00000411993 TRAF7Q6Q0C0 670 aa10.97□□□□□ -0.65
HDAC9-205ENST00000411993 DGAT1O75907 488 aa10.96□□□□□ -0.65
HDAC9-205ENST00000411993 TTC24A2A3L6 582 aaPredicted RBP10.95□□□□□ -0.66
HDAC9-205ENST00000411993 BRPF1P55201 1214 aaPredicted RBP10.94□□□□□ -0.66
HDAC9-205ENST00000411993 SKOR1P84550 965 aa10.94□□□□□ -0.66
HDAC9-205ENST00000411993 RC3H1Q5TC82 1133 aaKnown RBP10.94□□□□□ -0.66
HDAC9-205ENST00000411993 PROCA1Q8NCQ7 364 aaPredicted RBP10.94□□□□□ -0.66
HDAC9-205ENST00000411993 MRGPRX2Q96LB1 330 aa10.94□□□□□ -0.66
HDAC9-205ENST00000411993 LINC01559Q495D7 138 aa10.93□□□□□ -0.66
HDAC9-205ENST00000411993 TOR4AQ9NXH8 423 aa10.93□□□□□ -0.66
HDAC9-205ENST00000411993 MAP10Q9P2G4 905 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms