RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 SRPK2P78362 688 aaKnown RBP17.07■□□□□ 0.32
CHMP3-204ENST00000409727 TBX22Q9Y458 520 aa17.06■□□□□ 0.32
CHMP3-204ENST00000409727 PTPRUQ92729 1446 aa17.05■□□□□ 0.32
CHMP3-204ENST00000409727 CCER2I3L3R5 266 aa17.05■□□□□ 0.32
CHMP3-204ENST00000409727 PER1O15534 1290 aaPredicted RBP17.05■□□□□ 0.32
CHMP3-204ENST00000409727 ROBO2Q9HCK4 1378 aa17.04■□□□□ 0.32
CHMP3-204ENST00000409727 AMOTL2Q9Y2J4 779 aa17.04■□□□□ 0.32
CHMP3-204ENST00000409727 KNDC1Q76NI1 1749 aa17.04■□□□□ 0.32
CHMP3-204ENST00000409727 CC2D1BQ5T0F9 858 aaKnown RBP17.03■□□□□ 0.32
CHMP3-204ENST00000409727 NCKAP5LQ9HCH0 1330 aa17.03■□□□□ 0.32
CHMP3-204ENST00000409727 TECPR2O15040 1411 aa17.03■□□□□ 0.32
CHMP3-204ENST00000409727 CPS1P31327 1500 aa17.03■□□□□ 0.32
CHMP3-204ENST00000409727 CDK19Q9BWU1 502 aa17.03■□□□□ 0.32
CHMP3-204ENST00000409727 SLC12A5Q9H2X9 1139 aa17.03■□□□□ 0.32
CHMP3-204ENST00000409727 DIP2AQ14689 1571 aa17.03■□□□□ 0.32
CHMP3-204ENST00000409727 KNSTRNQ9Y448 316 aa17.02■□□□□ 0.32
CHMP3-204ENST00000409727 FAM135BQ49AJ0 1406 aa17.01■□□□□ 0.31
CHMP3-204ENST00000409727 CCDC184Q52MB2 194 aa17■□□□□ 0.31
CHMP3-204ENST00000409727 NPHP4O75161 1426 aaPredicted RBP16.99■□□□□ 0.31
CHMP3-204ENST00000409727 HSPA2P54652 639 aa16.99■□□□□ 0.31
CHMP3-204ENST00000409727 KTN1Q86UP2 1357 aaKnown RBP16.99■□□□□ 0.31
CHMP3-204ENST00000409727 SIRT1Q96EB6 747 aa16.99■□□□□ 0.31
CHMP3-204ENST00000409727 CARD14Q9BXL6 1004 aa16.98■□□□□ 0.31
CHMP3-204ENST00000409727 KCNA6P17658 529 aa16.97■□□□□ 0.31
CHMP3-204ENST00000409727 PUS7Q96PZ0 661 aaKnown RBP16.97■□□□□ 0.31
CHMP3-204ENST00000409727 WASLO00401 505 aaPredicted RBP16.97■□□□□ 0.31
CHMP3-204ENST00000409727 MRS2Q9HD23 443 aa16.97■□□□□ 0.31
CHMP3-204ENST00000409727 ATAD2Q6PL18 1390 aa16.96■□□□□ 0.31
CHMP3-204ENST00000409727 RALBP1Q15311 655 aa16.95■□□□□ 0.3
CHMP3-204ENST00000409727 XRN1Q8IZH2 1706 aaKnown RBP16.94■□□□□ 0.3
CHMP3-204ENST00000409727 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.94■□□□□ 0.3
CHMP3-204ENST00000409727 AMER1Q5JTC6 1135 aaPredicted RBP16.94■□□□□ 0.3
CHMP3-204ENST00000409727 PTCH1Q13635 1447 aa16.94■□□□□ 0.3
CHMP3-204ENST00000409727 NSD3Q9BZ95 1437 aa16.94■□□□□ 0.3
CHMP3-204ENST00000409727 PIK3R4Q99570 1358 aa16.94■□□□□ 0.3
CHMP3-204ENST00000409727 NUTM2FA1L443 756 aa16.93■□□□□ 0.3
CHMP3-204ENST00000409727 CABP1Q9NZU7 370 aa16.93■□□□□ 0.3
CHMP3-204ENST00000409727 PARD3Q8TEW0 1356 aa16.93■□□□□ 0.3
CHMP3-204ENST00000409727 MYBBP1AQ9BQG0 1328 aaKnown RBP16.93■□□□□ 0.3
CHMP3-204ENST00000409727 RBM33Q96EV2 1170 aaKnown RBP16.93■□□□□ 0.3
CHMP3-204ENST00000409727 ANKRD36BQ8N2N9 1353 aa16.92■□□□□ 0.3
CHMP3-204ENST00000409727 A0A1W2PP64 1363 aa16.9■□□□□ 0.3
CHMP3-204ENST00000409727 NINLQ9Y2I6 1382 aa16.9■□□□□ 0.3
CHMP3-204ENST00000409727 NUDT16Q96DE0 195 aaKnown RBP16.9■□□□□ 0.3
CHMP3-204ENST00000409727 CHD2O14647 1828 aaKnown RBP16.9■□□□□ 0.3
CHMP3-204ENST00000409727 LMTK3Q96Q04 1460 aa16.9■□□□□ 0.3
CHMP3-204ENST00000409727 FAM9BQ8IZU0 186 aa16.9■□□□□ 0.3
CHMP3-204ENST00000409727 TERF2IPQ9NYB0 399 aa16.89■□□□□ 0.29
CHMP3-204ENST00000409727 PPIP5K1Q6PFW1 1433 aa16.88■□□□□ 0.29
CHMP3-204ENST00000409727 ADGRB2O60241 1585 aa16.88■□□□□ 0.29
CHMP3-204ENST00000409727 HDGFL2Q7Z4V5 671 aaPredicted RBP16.88■□□□□ 0.29
CHMP3-204ENST00000409727 PRR36Q9H6K5 1346 aa16.88■□□□□ 0.29
CHMP3-204ENST00000409727 CD163L1Q9NR16 1453 aa16.87■□□□□ 0.29
CHMP3-204ENST00000409727 CCDC61Q9Y6R9 512 aa16.86■□□□□ 0.29
CHMP3-204ENST00000409727 NLRP13Q86W25 1043 aa16.86■□□□□ 0.29
CHMP3-204ENST00000409727 CGNL1Q0VF96 1302 aa16.86■□□□□ 0.29
CHMP3-204ENST00000409727 NPC1L1Q9UHC9 1359 aa16.85■□□□□ 0.29
CHMP3-204ENST00000409727 ATP7BP35670 1465 aa16.85■□□□□ 0.29
CHMP3-204ENST00000409727 CENPBP07199 599 aaPredicted RBP16.85■□□□□ 0.29
CHMP3-204ENST00000409727 TNNT2P45379 298 aaPredicted RBP16.84■□□□□ 0.29
CHMP3-204ENST00000409727 C14orf37Q86TY3 774 aa16.84■□□□□ 0.29
CHMP3-204ENST00000409727 PPP2R1AP30153 589 aa16.84■□□□□ 0.29
CHMP3-204ENST00000409727 BRD4O60885 1362 aaPredicted RBP16.84■□□□□ 0.29
CHMP3-204ENST00000409727 MORC1Q86VD1 984 aa16.83■□□□□ 0.28
CHMP3-204ENST00000409727 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.83■□□□□ 0.28
CHMP3-204ENST00000409727 USP32Q8NFA0 1604 aa16.81■□□□□ 0.28
CHMP3-204ENST00000409727 PROSER2Q86WR7 435 aaPredicted RBP16.81■□□□□ 0.28
CHMP3-204ENST00000409727 GGNBP2Q9H3C7 697 aa16.81■□□□□ 0.28
CHMP3-204ENST00000409727 NALCNQ8IZF0 1738 aa16.81■□□□□ 0.28
CHMP3-204ENST00000409727 PMFBP1Q8TBY8 1022 aa16.8■□□□□ 0.28
CHMP3-204ENST00000409727 NWD1Q149M9 1564 aa16.8■□□□□ 0.28
CHMP3-204ENST00000409727 CDC42BPGQ6DT37 1551 aa16.8■□□□□ 0.28
CHMP3-204ENST00000409727 HNRNPUQ00839 825 aaKnown RBP eCLIP16.79■□□□□ 0.28
CHMP3-204ENST00000409727 PNISRQ8TF01 805 aaKnown RBP16.79■□□□□ 0.28
CHMP3-204ENST00000409727 STRCQ7RTU9 1775 aa16.79■□□□□ 0.28
CHMP3-204ENST00000409727 CPSF1Q10570 1443 aaKnown RBP16.79■□□□□ 0.28
CHMP3-204ENST00000409727 TOPAZ1Q8N9V7 1692 aa16.78■□□□□ 0.28
CHMP3-204ENST00000409727 ACEP12821 1306 aa16.78■□□□□ 0.28
CHMP3-204ENST00000409727 NKTRP30414 1462 aaKnown RBP16.78■□□□□ 0.28
CHMP3-204ENST00000409727 FYB1O15117 783 aa16.78■□□□□ 0.28
CHMP3-204ENST00000409727 RGPD8O14715 1765 aaPredicted RBP16.77■□□□□ 0.28
CHMP3-204ENST00000409727 ADGRL3Q9HAR2 1447 aa16.77■□□□□ 0.27
CHMP3-204ENST00000409727 NSD2O96028 1365 aa16.77■□□□□ 0.27
CHMP3-204ENST00000409727 ITSN1Q15811 1721 aa16.76■□□□□ 0.27
CHMP3-204ENST00000409727 FMN2Q9NZ56 1722 aa16.76■□□□□ 0.27
CHMP3-204ENST00000409727 SENP3-EIF4A1A0A087X0R7 540 aa16.76■□□□□ 0.27
CHMP3-204ENST00000409727 EDC4Q6P2E9 1401 aaKnown RBP16.75■□□□□ 0.27
CHMP3-204ENST00000409727 STRCP1A6NGW2 1772 aa16.75■□□□□ 0.27
CHMP3-204ENST00000409727 PLEKHG3A1L390 1219 aa16.75■□□□□ 0.27
CHMP3-204ENST00000409727 NGDNQ8NEJ9 315 aaKnown RBP16.75■□□□□ 0.27
CHMP3-204ENST00000409727 NME9Q86XW9 330 aa16.74■□□□□ 0.27
CHMP3-204ENST00000409727 ZNF692Q9BU19 519 aaPredicted RBP16.74■□□□□ 0.27
CHMP3-204ENST00000409727 AKAP12Q02952 1782 aa16.74■□□□□ 0.27
CHMP3-204ENST00000409727 KIF20BQ96Q89 1820 aa16.74■□□□□ 0.27
CHMP3-204ENST00000409727 MON2Q7Z3U7 1717 aa16.73■□□□□ 0.27
CHMP3-204ENST00000409727 ANKARQ7Z5J8 1434 aa16.73■□□□□ 0.27
CHMP3-204ENST00000409727 ZRANB1Q9UGI0 708 aa16.73■□□□□ 0.27
CHMP3-204ENST00000409727 TMEM94Q12767 1356 aa16.72■□□□□ 0.27
CHMP3-204ENST00000409727 ESCO1Q5FWF5 840 aa16.71■□□□□ 0.27
CHMP3-204ENST00000409727 ZNF335Q9H4Z2 1342 aaPredicted RBP16.71■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms