RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 SLC26A8Q96RN1 970 aa19.24■□□□□ 0.67
GPNMB-203ENST00000409458 KTN1Q86UP2 1357 aaKnown RBP19.23■□□□□ 0.67
GPNMB-203ENST00000409458 PUS7Q96PZ0 661 aaKnown RBP19.23■□□□□ 0.67
GPNMB-203ENST00000409458 PARD3Q8TEW0 1356 aa19.23■□□□□ 0.67
GPNMB-203ENST00000409458 CABP2Q9NPB3 220 aa19.21■□□□□ 0.67
GPNMB-203ENST00000409458 ROBO2Q9HCK4 1378 aa19.21■□□□□ 0.67
GPNMB-203ENST00000409458 TBX22Q9Y458 520 aa19.2■□□□□ 0.66
GPNMB-203ENST00000409458 XRN1Q8IZH2 1706 aaKnown RBP19.2■□□□□ 0.66
GPNMB-203ENST00000409458 RALBP1Q15311 655 aa19.2■□□□□ 0.66
GPNMB-203ENST00000409458 SIRT1Q96EB6 747 aa19.2■□□□□ 0.66
GPNMB-203ENST00000409458 CC2D1BQ5T0F9 858 aaKnown RBP19.19■□□□□ 0.66
GPNMB-203ENST00000409458 KNSTRNQ9Y448 316 aa19.19■□□□□ 0.66
GPNMB-203ENST00000409458 SRPK2P78362 688 aaKnown RBP19.18■□□□□ 0.66
GPNMB-203ENST00000409458 ANKLE2Q86XL3 938 aa19.18■□□□□ 0.66
GPNMB-203ENST00000409458 TMC1Q8TDI8 760 aa19.18■□□□□ 0.66
GPNMB-203ENST00000409458 SLC12A5Q9H2X9 1139 aa19.18■□□□□ 0.66
GPNMB-203ENST00000409458 CENPBP07199 599 aaPredicted RBP19.17■□□□□ 0.66
GPNMB-203ENST00000409458 AMER1Q5JTC6 1135 aaPredicted RBP19.17■□□□□ 0.66
GPNMB-203ENST00000409458 MRS2Q9HD23 443 aa19.17■□□□□ 0.66
GPNMB-203ENST00000409458 ATAD2Q6PL18 1390 aa19.17■□□□□ 0.66
GPNMB-203ENST00000409458 MYBBP1AQ9BQG0 1328 aaKnown RBP19.17■□□□□ 0.66
GPNMB-203ENST00000409458 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.17■□□□□ 0.66
GPNMB-203ENST00000409458 CARD14Q9BXL6 1004 aa19.17■□□□□ 0.66
GPNMB-203ENST00000409458 PTCH1Q13635 1447 aa19.17■□□□□ 0.66
GPNMB-203ENST00000409458 ADGRB2O60241 1585 aa19.16■□□□□ 0.66
GPNMB-203ENST00000409458 CDK19Q9BWU1 502 aa19.16■□□□□ 0.66
GPNMB-203ENST00000409458 NINLQ9Y2I6 1382 aa19.16■□□□□ 0.66
GPNMB-203ENST00000409458 USP32Q8NFA0 1604 aa19.15■□□□□ 0.66
GPNMB-203ENST00000409458 NSD3Q9BZ95 1437 aa19.15■□□□□ 0.66
GPNMB-203ENST00000409458 NPC1L1Q9UHC9 1359 aa19.15■□□□□ 0.66
GPNMB-203ENST00000409458 ANKRD36BQ8N2N9 1353 aa19.14■□□□□ 0.65
GPNMB-203ENST00000409458 AMOTL2Q9Y2J4 779 aa19.14■□□□□ 0.65
GPNMB-203ENST00000409458 PIK3R4Q99570 1358 aa19.13■□□□□ 0.65
GPNMB-203ENST00000409458 NPHP4O75161 1426 aaPredicted RBP19.12■□□□□ 0.65
GPNMB-203ENST00000409458 KDM4FA0A1W2PPD8 638 aa19.12■□□□□ 0.65
GPNMB-203ENST00000409458 CD163L1Q9NR16 1453 aa19.12■□□□□ 0.65
GPNMB-203ENST00000409458 CHD2O14647 1828 aaKnown RBP19.12■□□□□ 0.65
GPNMB-203ENST00000409458 BRD4O60885 1362 aaPredicted RBP19.11■□□□□ 0.65
GPNMB-203ENST00000409458 A0A1W2PP64 1363 aa19.11■□□□□ 0.65
GPNMB-203ENST00000409458 WASLO00401 505 aaPredicted RBP19.11■□□□□ 0.65
GPNMB-203ENST00000409458 NLRP13Q86W25 1043 aa19.08■□□□□ 0.65
GPNMB-203ENST00000409458 NCKAP5LQ9HCH0 1330 aa19.08■□□□□ 0.65
GPNMB-203ENST00000409458 ATP7BP35670 1465 aa19.07■□□□□ 0.64
GPNMB-203ENST00000409458 FAM9BQ8IZU0 186 aa19.07■□□□□ 0.64
GPNMB-203ENST00000409458 TOPAZ1Q8N9V7 1692 aa19.06■□□□□ 0.64
GPNMB-203ENST00000409458 KCNA6P17658 529 aa19.06■□□□□ 0.64
GPNMB-203ENST00000409458 CABP1Q9NZU7 370 aa19.05■□□□□ 0.64
GPNMB-203ENST00000409458 PPIP5K1Q6PFW1 1433 aa19.04■□□□□ 0.64
GPNMB-203ENST00000409458 NWD1Q149M9 1564 aa19.03■□□□□ 0.64
GPNMB-203ENST00000409458 CDC42BPGQ6DT37 1551 aa19.03■□□□□ 0.64
GPNMB-203ENST00000409458 PPP2R1AP30153 589 aa19.03■□□□□ 0.64
GPNMB-203ENST00000409458 TERF2IPQ9NYB0 399 aa19.03■□□□□ 0.64
GPNMB-203ENST00000409458 PRR36Q9H6K5 1346 aa19.03■□□□□ 0.64
GPNMB-203ENST00000409458 CGNL1Q0VF96 1302 aa19.02■□□□□ 0.64
GPNMB-203ENST00000409458 PNISRQ8TF01 805 aaKnown RBP19.02■□□□□ 0.64
GPNMB-203ENST00000409458 NUDT16Q96DE0 195 aaKnown RBP19.02■□□□□ 0.64
GPNMB-203ENST00000409458 KIF20BQ96Q89 1820 aa19.02■□□□□ 0.63
GPNMB-203ENST00000409458 ITSN1Q15811 1721 aa19.02■□□□□ 0.63
GPNMB-203ENST00000409458 NALCNQ8IZF0 1738 aa19.02■□□□□ 0.63
GPNMB-203ENST00000409458 ANKRD26Q9UPS8 1709 aa19.02■□□□□ 0.63
GPNMB-203ENST00000409458 AKAP12Q02952 1782 aa19.01■□□□□ 0.63
GPNMB-203ENST00000409458 MON2Q7Z3U7 1717 aa19.01■□□□□ 0.63
GPNMB-203ENST00000409458 LMTK3Q96Q04 1460 aa19.01■□□□□ 0.63
GPNMB-203ENST00000409458 NSD2O96028 1365 aa19.01■□□□□ 0.63
GPNMB-203ENST00000409458 HDGFL2Q7Z4V5 671 aaPredicted RBP19.01■□□□□ 0.63
GPNMB-203ENST00000409458 HNRNPUQ00839 825 aaKnown RBP eCLIP18.99■□□□□ 0.63
GPNMB-203ENST00000409458 CPSF1Q10570 1443 aaKnown RBP18.99■□□□□ 0.63
GPNMB-203ENST00000409458 FMN2Q9NZ56 1722 aa18.98■□□□□ 0.63
GPNMB-203ENST00000409458 CCDC61Q9Y6R9 512 aa18.98■□□□□ 0.63
GPNMB-203ENST00000409458 NKTRP30414 1462 aaKnown RBP18.98■□□□□ 0.63
GPNMB-203ENST00000409458 HSPA2P54652 639 aa18.97■□□□□ 0.63
GPNMB-203ENST00000409458 RGPD8O14715 1765 aaPredicted RBP18.96■□□□□ 0.63
GPNMB-203ENST00000409458 MORC1Q86VD1 984 aa18.96■□□□□ 0.63
GPNMB-203ENST00000409458 NRKQ7Z2Y5 1582 aa18.95■□□□□ 0.62
GPNMB-203ENST00000409458 NUTM2FA1L443 756 aa18.95■□□□□ 0.62
GPNMB-203ENST00000409458 EDC4Q6P2E9 1401 aaKnown RBP18.94■□□□□ 0.62
GPNMB-203ENST00000409458 STRCQ7RTU9 1775 aa18.93■□□□□ 0.62
GPNMB-203ENST00000409458 ADGRL3Q9HAR2 1447 aa18.93■□□□□ 0.62
GPNMB-203ENST00000409458 ANKARQ7Z5J8 1434 aa18.92■□□□□ 0.62
GPNMB-203ENST00000409458 STRCP1A6NGW2 1772 aa18.92■□□□□ 0.62
GPNMB-203ENST00000409458 FYB1O15117 783 aa18.92■□□□□ 0.62
GPNMB-203ENST00000409458 RBM33Q96EV2 1170 aaKnown RBP18.92■□□□□ 0.62
GPNMB-203ENST00000409458 GGNBP2Q9H3C7 697 aa18.92■□□□□ 0.62
GPNMB-203ENST00000409458 TNNT2P45379 298 aaPredicted RBP18.91■□□□□ 0.62
GPNMB-203ENST00000409458 PLEKHG3A1L390 1219 aa18.9■□□□□ 0.62
GPNMB-203ENST00000409458 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.9■□□□□ 0.62
GPNMB-203ENST00000409458 BLMP54132 1417 aaPredicted RBP18.89■□□□□ 0.61
GPNMB-203ENST00000409458 ACEP12821 1306 aa18.88■□□□□ 0.61
GPNMB-203ENST00000409458 SHPRHQ149N8 1683 aa18.88■□□□□ 0.61
GPNMB-203ENST00000409458 ZBED9Q6R2W3 1325 aa18.88■□□□□ 0.61
GPNMB-203ENST00000409458 POLR3AO14802 1390 aaPredicted RBP18.87■□□□□ 0.61
GPNMB-203ENST00000409458 INSRP06213 1382 aa18.87■□□□□ 0.61
GPNMB-203ENST00000409458 USP6P35125 1406 aa18.87■□□□□ 0.61
GPNMB-203ENST00000409458 ZNF692Q9BU19 519 aaPredicted RBP18.86■□□□□ 0.61
GPNMB-203ENST00000409458 NME9Q86XW9 330 aa18.85■□□□□ 0.61
GPNMB-203ENST00000409458 PMFBP1Q8TBY8 1022 aa18.84■□□□□ 0.61
GPNMB-203ENST00000409458 WDR43Q15061 677 aaKnown RBP eCLIP18.83■□□□□ 0.61
GPNMB-203ENST00000409458 SSH2Q76I76 1423 aa18.83■□□□□ 0.61
GPNMB-203ENST00000409458 MTHFSP49914 203 aa18.82■□□□□ 0.6
GPNMB-203ENST00000409458 PROSER2Q86WR7 435 aaPredicted RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms