RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 DIP2BQ9P265 1576 aa8.7□□□□□ -1.02
CLK1-202ENST00000409403 SWT1Q5T5J6 900 aaKnown RBP8.7□□□□□ -1.02
CLK1-202ENST00000409403 SPTLC1O15269 473 aa8.69□□□□□ -1.02
CLK1-202ENST00000409403 SLC4A3P48751 1232 aa8.69□□□□□ -1.02
CLK1-202ENST00000409403 MCM6Q14566 821 aa8.69□□□□□ -1.02
CLK1-202ENST00000409403 TUSC1Q2TAM9 212 aa8.69□□□□□ -1.02
CLK1-202ENST00000409403 RSBN1LQ6PCB5 846 aaPredicted RBP8.69□□□□□ -1.02
CLK1-202ENST00000409403 MOXD2PA6NHM9 499 aa8.69□□□□□ -1.02
CLK1-202ENST00000409403 KDM4AO75164 1064 aa8.69□□□□□ -1.02
CLK1-202ENST00000409403 GJA5P36382 358 aa8.69□□□□□ -1.02
CLK1-202ENST00000409403 GCGRP47871 477 aa8.69□□□□□ -1.02
CLK1-202ENST00000409403 NBPF3Q9H094 633 aa8.69□□□□□ -1.02
CLK1-202ENST00000409403 PRDM2Q13029 1718 aa8.68□□□□□ -1.02
CLK1-202ENST00000409403 TARBP1Q13395 1621 aaKnown RBP8.68□□□□□ -1.02
CLK1-202ENST00000409403 RFC5P40937 340 aa8.68□□□□□ -1.02
CLK1-202ENST00000409403 USP46P62068 366 aa8.68□□□□□ -1.02
CLK1-202ENST00000409403 LAPTM4BQ86VI4 370 aa8.68□□□□□ -1.02
CLK1-202ENST00000409403 SLC10A3P09131 477 aa8.67□□□□□ -1.02
CLK1-202ENST00000409403 PPP2R2DQ66LE6 453 aa8.67□□□□□ -1.02
CLK1-202ENST00000409403 TK2O00142 265 aa8.66□□□□□ -1.02
CLK1-202ENST00000409403 UBTFP17480 764 aaKnown RBP8.66□□□□□ -1.02
CLK1-202ENST00000409403 NDUFV2P19404 249 aa8.65□□□□□ -1.02
CLK1-202ENST00000409403 SLF2Q8IX21 1173 aa8.65□□□□□ -1.02
CLK1-202ENST00000409403 BHMG1C9JSJ3 638 aaPredicted RBP8.65□□□□□ -1.03
CLK1-202ENST00000409403 CSPP1Q1MSJ5 1256 aa8.65□□□□□ -1.03
CLK1-202ENST00000409403 TMEM259Q4ZIN3 620 aa8.65□□□□□ -1.03
CLK1-202ENST00000409403 SAMD7Q7Z3H4 446 aa8.65□□□□□ -1.03
CLK1-202ENST00000409403 BANK1Q8NDB2 785 aa8.65□□□□□ -1.03
CLK1-202ENST00000409403 ABCC10Q5T3U5 1492 aa8.65□□□□□ -1.03
CLK1-202ENST00000409403 SPDYE5A6NIY4 337 aa8.64□□□□□ -1.03
CLK1-202ENST00000409403 HOXA2O43364 376 aa8.64□□□□□ -1.03
CLK1-202ENST00000409403 FBXO31Q5XUX0 539 aaPredicted RBP8.64□□□□□ -1.03
CLK1-202ENST00000409403 SNAPC4Q5SXM2 1469 aa8.64□□□□□ -1.03
CLK1-202ENST00000409403 CFTRP13569 1480 aa8.63□□□□□ -1.03
CLK1-202ENST00000409403 A6NJR5 290 aa8.63□□□□□ -1.03
CLK1-202ENST00000409403 LSM11P83369 360 aaKnown RBP eCLIP8.63□□□□□ -1.035e-9■■□□□ 11.5
CLK1-202ENST00000409403 ANKRD13DQ6ZTN6 518 aa8.63□□□□□ -1.03
CLK1-202ENST00000409403 ARXQ96QS3 562 aa8.63□□□□□ -1.03
CLK1-202ENST00000409403 PCDHB15Q9Y5E8 787 aa8.63□□□□□ -1.03
CLK1-202ENST00000409403 TTBK1Q5TCY1 1321 aaPredicted RBP8.63□□□□□ -1.03
CLK1-202ENST00000409403 LILRB3O75022 631 aa8.62□□□□□ -1.03
CLK1-202ENST00000409403 FAM69CQ0P6D2 419 aa8.62□□□□□ -1.03
CLK1-202ENST00000409403 QPCTQ16769 361 aa8.62□□□□□ -1.03
CLK1-202ENST00000409403 CLUAP1Q96AJ1 413 aa8.62□□□□□ -1.03
CLK1-202ENST00000409403 ZFRQ96KR1 1074 aaKnown RBP8.62□□□□□ -1.03
CLK1-202ENST00000409403 TOPBP1Q92547 1522 aa8.62□□□□□ -1.03
CLK1-202ENST00000409403 FDX1P10109 184 aa8.62□□□□□ -1.03
CLK1-202ENST00000409403 PRPF38BQ5VTL8 546 aaKnown RBP8.62□□□□□ -1.03
CLK1-202ENST00000409403 MRPL50Q8N5N7 158 aaKnown RBP8.62□□□□□ -1.03
CLK1-202ENST00000409403 RNF40O75150 1001 aa8.61□□□□□ -1.03
CLK1-202ENST00000409403 ADGRD1Q6QNK2 874 aa8.61□□□□□ -1.03
CLK1-202ENST00000409403 MYT1LQ9UL68 1186 aa8.61□□□□□ -1.03
CLK1-202ENST00000409403 MROH2BQ7Z745 1585 aa8.6□□□□□ -1.03
CLK1-202ENST00000409403 NUTM2BA6NNL0 878 aaPredicted RBP8.6□□□□□ -1.03
CLK1-202ENST00000409403 NUTM2EB1AL46 878 aaPredicted RBP8.6□□□□□ -1.03
CLK1-202ENST00000409403 CFHP08603 1231 aa8.6□□□□□ -1.03
CLK1-202ENST00000409403 NUTM2DQ5VT03 806 aaPredicted RBP8.6□□□□□ -1.03
CLK1-202ENST00000409403 NUTM2AQ8IVF1 878 aaPredicted RBP8.6□□□□□ -1.03
CLK1-202ENST00000409403 RNF166Q96A37 237 aaPredicted RBP8.6□□□□□ -1.03
CLK1-202ENST00000409403 RAD21O60216 631 aa8.59□□□□□ -1.03
CLK1-202ENST00000409403 GRIPAP1Q4V328 841 aa8.59□□□□□ -1.03
CLK1-202ENST00000409403 ZBTB3Q9H5J0 574 aa8.59□□□□□ -1.03
CLK1-202ENST00000409403 SNRKQ9NRH2 765 aa8.59□□□□□ -1.03
CLK1-202ENST00000409403 FUT2Q10981 343 aa8.59□□□□□ -1.03
CLK1-202ENST00000409403 RTL5Q5HYW3 569 aaPredicted RBP8.59□□□□□ -1.03
CLK1-202ENST00000409403 CABLES1Q8TDN4 633 aa8.59□□□□□ -1.03
CLK1-202ENST00000409403 NECTIN2Q92692 538 aa8.59□□□□□ -1.03
CLK1-202ENST00000409403 LRCH3Q96II8 777 aa8.58□□□□□ -1.04
CLK1-202ENST00000409403 PCDHGC3Q9UN70 934 aa8.58□□□□□ -1.04
CLK1-202ENST00000409403 TOP2BQ02880 1626 aa8.58□□□□□ -1.04
CLK1-202ENST00000409403 PPRC1Q5VV67 1664 aaKnown RBP8.58□□□□□ -1.04
CLK1-202ENST00000409403 HRO43593 1189 aa8.57□□□□□ -1.04
CLK1-202ENST00000409403 GUCA2AQ02747 115 aa8.57□□□□□ -1.04
CLK1-202ENST00000409403 KMT5BQ4FZB7 885 aa8.57□□□□□ -1.04
CLK1-202ENST00000409403 HLA-CQ95604 372 aa8.57□□□□□ -1.04
CLK1-202ENST00000409403 TRAK2O60296 914 aa8.56□□□□□ -1.04
CLK1-202ENST00000409403 AP1G2O75843 785 aa8.56□□□□□ -1.04
CLK1-202ENST00000409403 ATP6V1AP38606 617 aa8.56□□□□□ -1.04
CLK1-202ENST00000409403 PROSER2Q86WR7 435 aaPredicted RBP8.56□□□□□ -1.04
CLK1-202ENST00000409403 POM121Q96HA1 1249 aa8.56□□□□□ -1.04
CLK1-202ENST00000409403 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.56□□□□□ -1.04
CLK1-202ENST00000409403 MTMR2Q13614 643 aa8.56□□□□□ -1.04
CLK1-202ENST00000409403 STAC3Q96MF2 364 aa8.56□□□□□ -1.04
CLK1-202ENST00000409403 MAPKBP1O60336 1514 aa8.55□□□□□ -1.04
CLK1-202ENST00000409403 APBB1O00213 710 aa8.55□□□□□ -1.04
CLK1-202ENST00000409403 MTMR14Q8NCE2 650 aa8.55□□□□□ -1.04
CLK1-202ENST00000409403 COG6Q9Y2V7 657 aa8.55□□□□□ -1.04
CLK1-202ENST00000409403 CEP170Q5SW79 1584 aa8.55□□□□□ -1.04
CLK1-202ENST00000409403 ARID3CA6NKF2 412 aa8.54□□□□□ -1.04
CLK1-202ENST00000409403 GOLGA8CPA6NN73 597 aa8.54□□□□□ -1.04
CLK1-202ENST00000409403 ANKK1Q8NFD2 765 aa8.54□□□□□ -1.04
CLK1-202ENST00000409403 C1orf115Q9H7X2 142 aa8.54□□□□□ -1.04
CLK1-202ENST00000409403 USP17L8P0C7I0 530 aa8.53□□□□□ -1.04
CLK1-202ENST00000409403 HOMEZQ8IX15 550 aa8.53□□□□□ -1.04
CLK1-202ENST00000409403 C6orf229H3BNL8 230 aa8.53□□□□□ -1.04
CLK1-202ENST00000409403 FNBP4Q8N3X1 1017 aaPredicted RBP8.53□□□□□ -1.04
CLK1-202ENST00000409403 PRR14Q9BWN1 585 aa8.53□□□□□ -1.04
CLK1-202ENST00000409403 PCF11O94913 1555 aaKnown RBP8.52□□□□□ -1.05
CLK1-202ENST00000409403 DNMBPQ6XZF7 1577 aa8.52□□□□□ -1.05
CLK1-202ENST00000409403 ACTN4O43707 911 aaKnown RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms