RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 SEC24BO95487 1268 aa16.57■□□□□ 0.24
PTPRN-202ENST00000409251 TXNDC2Q86VQ3 553 aa16.57■□□□□ 0.24
PTPRN-202ENST00000409251 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.57■□□□□ 0.24
PTPRN-202ENST00000409251 C14orf93Q9H972 538 aaKnown RBP16.57■□□□□ 0.24
PTPRN-202ENST00000409251 GPRASP1Q5JY77 1395 aa16.56■□□□□ 0.24
PTPRN-202ENST00000409251 TRIM44Q96DX7 344 aaPredicted RBP16.56■□□□□ 0.24
PTPRN-202ENST00000409251 EIF3AQ14152 1382 aaKnown RBP16.56■□□□□ 0.24
PTPRN-202ENST00000409251 TRPM1Q7Z4N2 1603 aa16.56■□□□□ 0.24
PTPRN-202ENST00000409251 NCKAP5LQ9HCH0 1330 aa16.56■□□□□ 0.24
PTPRN-202ENST00000409251 BCAR3O75815 825 aa16.56■□□□□ 0.24
PTPRN-202ENST00000409251 CENPQQ7L2Z9 268 aaPredicted RBP16.56■□□□□ 0.24
PTPRN-202ENST00000409251 RBM33Q96EV2 1170 aaKnown RBP16.56■□□□□ 0.24
PTPRN-202ENST00000409251 COG6Q9Y2V7 657 aa16.56■□□□□ 0.24
PTPRN-202ENST00000409251 SCAF11Q99590 1463 aaKnown RBP16.56■□□□□ 0.24
PTPRN-202ENST00000409251 C8orf34Q49A92 452 aa16.56■□□□□ 0.24
PTPRN-202ENST00000409251 AMER1Q5JTC6 1135 aaPredicted RBP16.56■□□□□ 0.24
PTPRN-202ENST00000409251 SLC26A8Q96RN1 970 aa16.55■□□□□ 0.24
PTPRN-202ENST00000409251 TRPM2O94759 1503 aa16.55■□□□□ 0.24
PTPRN-202ENST00000409251 COL17A1Q9UMD9 1497 aaPredicted RBP16.55■□□□□ 0.24
PTPRN-202ENST00000409251 ARAP3Q8WWN8 1544 aa16.54■□□□□ 0.24
PTPRN-202ENST00000409251 MLH3Q9UHC1 1453 aa16.54■□□□□ 0.24
PTPRN-202ENST00000409251 APAF1O14727 1248 aa16.54■□□□□ 0.24
PTPRN-202ENST00000409251 ABCA6Q8N139 1617 aa16.53■□□□□ 0.24
PTPRN-202ENST00000409251 PPRC1Q5VV67 1664 aaKnown RBP16.53■□□□□ 0.24
PTPRN-202ENST00000409251 FRMPD1Q5SYB0 1578 aa16.53■□□□□ 0.24
PTPRN-202ENST00000409251 HECW2Q9P2P5 1572 aa16.53■□□□□ 0.24
PTPRN-202ENST00000409251 L1TD1Q5T7N2 865 aaKnown RBP16.52■□□□□ 0.24
PTPRN-202ENST00000409251 U2SURPO15042 1029 aaKnown RBP16.52■□□□□ 0.24
PTPRN-202ENST00000409251 PANK1Q8TE04 598 aa16.52■□□□□ 0.23
PTPRN-202ENST00000409251 SLC52A1Q9NWF4 448 aa16.51■□□□□ 0.23
PTPRN-202ENST00000409251 MFAP1P55081 439 aaKnown RBP16.51■□□□□ 0.23
PTPRN-202ENST00000409251 MROH1Q8NDA8 1641 aa16.51■□□□□ 0.23
PTPRN-202ENST00000409251 SPHKAPQ2M3C7 1700 aa16.51■□□□□ 0.23
PTPRN-202ENST00000409251 A0A0U1RQG5 324 aaPredicted RBP16.51■□□□□ 0.23
PTPRN-202ENST00000409251 NEO1Q92859 1461 aa16.5■□□□□ 0.23
PTPRN-202ENST00000409251 BRD4O60885 1362 aaPredicted RBP16.5■□□□□ 0.23
PTPRN-202ENST00000409251 EFCAB6Q5THR3 1501 aa16.5■□□□□ 0.23
PTPRN-202ENST00000409251 PDE3BQ13370 1112 aa16.5■□□□□ 0.23
PTPRN-202ENST00000409251 CABP1Q9NZU7 370 aa16.49■□□□□ 0.23
PTPRN-202ENST00000409251 TET3O43151 1660 aa16.49■□□□□ 0.23
PTPRN-202ENST00000409251 MTHFSP49914 203 aa16.48■□□□□ 0.23
PTPRN-202ENST00000409251 PARD3Q8TEW0 1356 aa16.48■□□□□ 0.23
PTPRN-202ENST00000409251 ABCC3O15438 1527 aa16.48■□□□□ 0.23
PTPRN-202ENST00000409251 RBM10P98175 930 aaKnown RBP16.47■□□□□ 0.23
PTPRN-202ENST00000409251 GOLGA2Q08379 1002 aa16.47■□□□□ 0.23
PTPRN-202ENST00000409251 RNF17Q9BXT8 1623 aaKnown RBP16.47■□□□□ 0.23
PTPRN-202ENST00000409251 TPRNQ4KMQ1 711 aa16.47■□□□□ 0.23
PTPRN-202ENST00000409251 EVC2Q86UK5 1308 aa16.47■□□□□ 0.23
PTPRN-202ENST00000409251 XRCC6P12956 609 aaKnown RBP eCLIP16.47■□□□□ 0.23
PTPRN-202ENST00000409251 MYH16Q9H6N6 1097 aa16.47■□□□□ 0.23
PTPRN-202ENST00000409251 NSD3Q9BZ95 1437 aa16.47■□□□□ 0.23
PTPRN-202ENST00000409251 IGHDP01880 384 aa16.46■□□□□ 0.23
PTPRN-202ENST00000409251 NCLP19338 710 aaKnown RBP16.46■□□□□ 0.23
PTPRN-202ENST00000409251 CDK19Q9BWU1 502 aa16.46■□□□□ 0.23
PTPRN-202ENST00000409251 U2AF1L5P0DN76 240 aaPredicted RBP16.45■□□□□ 0.22
PTPRN-202ENST00000409251 U2AF1Q01081 240 aaKnown RBP eCLIP16.45■□□□□ 0.22
PTPRN-202ENST00000409251 MADDQ8WXG6 1647 aa16.45■□□□□ 0.22
PTPRN-202ENST00000409251 DIP2CQ9Y2E4 1556 aa16.45■□□□□ 0.22
PTPRN-202ENST00000409251 STAC3Q96MF2 364 aa16.43■□□□□ 0.22
PTPRN-202ENST00000409251 ZRANB1Q9UGI0 708 aa16.43■□□□□ 0.22
PTPRN-202ENST00000409251 MROH2AA6NES4 1674 aa16.43■□□□□ 0.22
PTPRN-202ENST00000409251 DMRT2Q9Y5R5 561 aa16.42■□□□□ 0.22
PTPRN-202ENST00000409251 SPINK5Q9NQ38 1064 aaPredicted RBP16.42■□□□□ 0.22
PTPRN-202ENST00000409251 ZMYM3Q14202 1370 aa16.41■□□□□ 0.22
PTPRN-202ENST00000409251 PLEKHH1Q9ULM0 1364 aa16.41■□□□□ 0.22
PTPRN-202ENST00000409251 ERVK-7P63135 1459 aa16.41■□□□□ 0.22
PTPRN-202ENST00000409251 EIF2AK4Q9P2K8 1649 aaKnown RBP16.4■□□□□ 0.22
PTPRN-202ENST00000409251 RPGRIP1LQ68CZ1 1315 aa16.4■□□□□ 0.22
PTPRN-202ENST00000409251 TRAK2O60296 914 aa16.39■□□□□ 0.21
PTPRN-202ENST00000409251 FAM13BQ9NYF5 915 aa16.39■□□□□ 0.21
PTPRN-202ENST00000409251 DEPDC5O75140 1603 aa16.39■□□□□ 0.21
PTPRN-202ENST00000409251 VWDEQ8N2E2 1590 aa16.39■□□□□ 0.21
PTPRN-202ENST00000409251 KIF1BO60333 1816 aa16.39■□□□□ 0.21
PTPRN-202ENST00000409251 CGNL1Q0VF96 1302 aa16.38■□□□□ 0.21
PTPRN-202ENST00000409251 PIK3C2GO75747 1445 aa16.38■□□□□ 0.21
PTPRN-202ENST00000409251 C14orf37Q86TY3 774 aa16.38■□□□□ 0.21
PTPRN-202ENST00000409251 PMFBP1Q8TBY8 1022 aa16.38■□□□□ 0.21
PTPRN-202ENST00000409251 DIP2BQ9P265 1576 aa16.37■□□□□ 0.21
PTPRN-202ENST00000409251 NUTM2GQ5VZR2 741 aa16.37■□□□□ 0.21
PTPRN-202ENST00000409251 TBC1D2Q9BYX2 928 aa16.37■□□□□ 0.21
PTPRN-202ENST00000409251 TNNQ9UQP3 1299 aa16.37■□□□□ 0.21
PTPRN-202ENST00000409251 LTKP29376 864 aa16.36■□□□□ 0.21
PTPRN-202ENST00000409251 MAP3K4Q9Y6R4 1608 aa16.36■□□□□ 0.21
PTPRN-202ENST00000409251 HMOX1P09601 288 aa16.36■□□□□ 0.21
PTPRN-202ENST00000409251 DUSP27Q5VZP5 1158 aa16.36■□□□□ 0.21
PTPRN-202ENST00000409251 LRPPRCP42704 1394 aaKnown RBP16.35■□□□□ 0.21
PTPRN-202ENST00000409251 SIGLEC1Q9BZZ2 1709 aa16.35■□□□□ 0.21
PTPRN-202ENST00000409251 CFAP74Q9C0B2 1584 aa16.35■□□□□ 0.21
PTPRN-202ENST00000409251 KDM2BQ8NHM5 1336 aa16.34■□□□□ 0.21
PTPRN-202ENST00000409251 MCM4P33991 863 aa16.34■□□□□ 0.21
PTPRN-202ENST00000409251 ANP32BQ92688 251 aaKnown RBP16.34■□□□□ 0.21
PTPRN-202ENST00000409251 ESPNB1AK53 854 aa16.34■□□□□ 0.21
PTPRN-202ENST00000409251 RRS1Q15050 365 aaKnown RBP16.34■□□□□ 0.21
PTPRN-202ENST00000409251 HDGFL2Q7Z4V5 671 aaPredicted RBP16.34■□□□□ 0.21
PTPRN-202ENST00000409251 SYNMO15061 1565 aa16.33■□□□□ 0.21
PTPRN-202ENST00000409251 PODXL2Q9NZ53 605 aa16.33■□□□□ 0.21
PTPRN-202ENST00000409251 NME9Q86XW9 330 aa16.33■□□□□ 0.2
PTPRN-202ENST00000409251 TERF2IPQ9NYB0 399 aa16.33■□□□□ 0.2
PTPRN-202ENST00000409251 HSP90AB1P08238 724 aaKnown RBP16.32■□□□□ 0.2
PTPRN-202ENST00000409251 METP08581 1390 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms