RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 MSH6P52701 1360 aa41.6■■■■■ 4.25
USP42-202ENST00000404008 SAFB2Q14151 953 aaKnown RBP eCLIP41.58■■■■■ 4.25
USP42-202ENST00000404008 C19orf44Q9H6X5 657 aa41.57■■■■■ 4.25
USP42-202ENST00000404008 ADGRB2O60241 1585 aa41.56■■■■■ 4.24
USP42-202ENST00000404008 CENPJQ9HC77 1338 aaPredicted RBP41.55■■■■■ 4.24
USP42-202ENST00000404008 DCCP43146 1447 aa41.55■■■■■ 4.24
USP42-202ENST00000404008 CDC42BPGQ6DT37 1551 aa41.55■■■■■ 4.24
USP42-202ENST00000404008 USP47Q96K76 1375 aa41.51■■■■■ 4.24
USP42-202ENST00000404008 ZEB1P37275 1124 aaPredicted RBP41.48■■■■■ 4.23
USP42-202ENST00000404008 MINK1Q8N4C8 1332 aaPredicted RBP41.47■■■■■ 4.23
USP42-202ENST00000404008 FMN2Q9NZ56 1722 aa41.45■■■■■ 4.23
USP42-202ENST00000404008 ATF3P18847 181 aa41.44■■■■■ 4.22
USP42-202ENST00000404008 CADPS2Q86UW7 1296 aa41.43■■■■■ 4.22
USP42-202ENST00000404008 HIRIP3Q9BW71 556 aaPredicted RBP41.43■■■■■ 4.22
USP42-202ENST00000404008 SBNO2Q9Y2G9 1366 aa41.4■■■■■ 4.22
USP42-202ENST00000404008 ST20-MTHFSA0A0A6YYL1 179 aa41.39■■■■■ 4.22
USP42-202ENST00000404008 MST1RQ04912 1400 aa41.37■■■■■ 4.21
USP42-202ENST00000404008 UBAP1LF5GYI3 381 aa41.37■■■■■ 4.21
USP42-202ENST00000404008 TOM1O60784 492 aa41.37■■■■■ 4.21
USP42-202ENST00000404008 TULP4Q9NRJ4 1543 aa41.35■■■■■ 4.21
USP42-202ENST00000404008 WASLO00401 505 aaPredicted RBP41.33■■■■■ 4.21
USP42-202ENST00000404008 EIF4G2P78344 907 aaKnown RBP eCLIP41.33■■■■■ 4.21
USP42-202ENST00000404008 USP32Q8NFA0 1604 aa41.31■■■■■ 4.2
USP42-202ENST00000404008 TESK2Q96S53 571 aa41.31■■■■■ 4.2
USP42-202ENST00000404008 SLAIN2Q9P270 581 aa41.31■■■■■ 4.2
USP42-202ENST00000404008 RGPD8O14715 1765 aaPredicted RBP41.3■■■■■ 4.2
USP42-202ENST00000404008 C1orf167Q5SNV9 1468 aa41.28■■■■■ 4.2
USP42-202ENST00000404008 HSPA5P11021 654 aaKnown RBP41.26■■■■■ 4.2
USP42-202ENST00000404008 CDK19Q9BWU1 502 aa41.25■■■■■ 4.19
USP42-202ENST00000404008 EVC2Q86UK5 1308 aa41.25■■■■■ 4.19
USP42-202ENST00000404008 ANKARQ7Z5J8 1434 aa41.24■■■■■ 4.19
USP42-202ENST00000404008 ROBO1Q9Y6N7 1651 aa41.24■■■■■ 4.19
USP42-202ENST00000404008 NUTM2FA1L443 756 aa41.23■■■■■ 4.19
USP42-202ENST00000404008 ATP7BP35670 1465 aa41.21■■■■■ 4.19
USP42-202ENST00000404008 ITSN1Q15811 1721 aa41.2■■■■■ 4.19
USP42-202ENST00000404008 SLC24A1O60721 1099 aa41.2■■■■■ 4.19
USP42-202ENST00000404008 PIP4K2BP78356 416 aa41.19■■■■■ 4.18
USP42-202ENST00000404008 TOPAZ1Q8N9V7 1692 aa41.19■■■■■ 4.18
USP42-202ENST00000404008 PRR36Q9H6K5 1346 aa41.17■■■■■ 4.18
USP42-202ENST00000404008 SRPK2P78362 688 aaKnown RBP41.16■■■■■ 4.18
USP42-202ENST00000404008 CABP2Q9NPB3 220 aa41.15■■■■■ 4.18
USP42-202ENST00000404008 DISP3Q9P2K9 1392 aa41.13■■■■■ 4.18
USP42-202ENST00000404008 SCAF1Q9H7N4 1312 aaKnown RBP41.13■■■■■ 4.18
USP42-202ENST00000404008 FBXO41Q8TF61 875 aa41.13■■■■■ 4.18
USP42-202ENST00000404008 KIF1AQ12756 1690 aa41.13■■■■■ 4.17
USP42-202ENST00000404008 BRINP3Q76B58 766 aa41.12■■■■■ 4.17
USP42-202ENST00000404008 NUDT16Q96DE0 195 aaKnown RBP41.12■■■■■ 4.17
USP42-202ENST00000404008 ORAI2Q96SN7 254 aa41.12■■■■■ 4.17
USP42-202ENST00000404008 TMF1P82094 1093 aa41.12■■■■■ 4.17
USP42-202ENST00000404008 ESCO1Q5FWF5 840 aa41.11■■■■■ 4.17
USP42-202ENST00000404008 NHSL1Q5SYE7 1610 aa41.07■■■■■ 4.17
USP42-202ENST00000404008 PUS7Q96PZ0 661 aaKnown RBP41.04■■■■■ 4.16
USP42-202ENST00000404008 CCDC61Q9Y6R9 512 aa41.04■■■■■ 4.16
USP42-202ENST00000404008 ATAD2Q6PL18 1390 aa41.04■■■■■ 4.16
USP42-202ENST00000404008 AHDC1Q5TGY3 1603 aaPredicted RBP41.02■■■■■ 4.16
USP42-202ENST00000404008 PHF8Q9UPP1 1060 aa41.01■■■■■ 4.16
USP42-202ENST00000404008 PPIP5K1Q6PFW1 1433 aa41.01■■■■■ 4.16
USP42-202ENST00000404008 PHLPP1O60346 1717 aa40.98■■■■■ 4.15
USP42-202ENST00000404008 CDCA8Q53HL2 280 aa40.98■■■■■ 4.15
USP42-202ENST00000404008 PMFBP1Q8TBY8 1022 aa40.96■■■■■ 4.15
USP42-202ENST00000404008 PLEKHG3A1L390 1219 aa40.94■■■■■ 4.14
USP42-202ENST00000404008 MYOM1P52179 1685 aa40.92■■■■■ 4.14
USP42-202ENST00000404008 CABP1Q9NZU7 370 aa40.92■■■■■ 4.14
USP42-202ENST00000404008 C11orf95C9JLR9 678 aaPredicted RBP40.91■■■■■ 4.14
USP42-202ENST00000404008 FOXO3O43524 673 aa40.91■■■■■ 4.14
USP42-202ENST00000404008 DDX17Q92841 729 aaKnown RBP40.91■■■■■ 4.14
USP42-202ENST00000404008 POLR3AO14802 1390 aaPredicted RBP40.9■■■■■ 4.14
USP42-202ENST00000404008 COL16A1Q07092 1604 aaPredicted RBP40.9■■■■■ 4.14
USP42-202ENST00000404008 NPHP3Q7Z494 1330 aa40.89■■■■■ 4.14
USP42-202ENST00000404008 AKAP12Q02952 1782 aa40.89■■■■■ 4.14
USP42-202ENST00000404008 PXDNQ92626 1479 aa40.89■■■■■ 4.14
USP42-202ENST00000404008 ACEP12821 1306 aa40.87■■■■■ 4.13
USP42-202ENST00000404008 NGDNQ8NEJ9 315 aaKnown RBP40.86■■■■■ 4.13
USP42-202ENST00000404008 NINLQ9Y2I6 1382 aa40.86■■■■■ 4.13
USP42-202ENST00000404008 HSPA1LP34931 641 aa40.84■■■■■ 4.13
USP42-202ENST00000404008 TMC1Q8TDI8 760 aa40.84■■■■■ 4.13
USP42-202ENST00000404008 SOS2Q07890 1332 aaPredicted RBP40.82■■■■■ 4.13
USP42-202ENST00000404008 SLC12A5Q9H2X9 1139 aa40.82■■■■■ 4.12
USP42-202ENST00000404008 CD163L1Q9NR16 1453 aa40.81■■■■■ 4.12
USP42-202ENST00000404008 TRPM3Q9HCF6 1732 aaPredicted RBP40.81■■■■■ 4.12
USP42-202ENST00000404008 KIF7Q2M1P5 1343 aa40.81■■■■■ 4.12
USP42-202ENST00000404008 MON2Q7Z3U7 1717 aa40.8■■■■■ 4.12
USP42-202ENST00000404008 PSME1Q06323 249 aa40.8■■■■■ 4.12
USP42-202ENST00000404008 CPSF1Q10570 1443 aaKnown RBP40.79■■■■■ 4.12
USP42-202ENST00000404008 XPCQ01831 940 aaPredicted RBP40.79■■■■■ 4.12
USP42-202ENST00000404008 POLR3GLQ9BT43 218 aa40.78■■■■■ 4.12
USP42-202ENST00000404008 KRT28Q7Z3Y7 464 aa40.77■■■■■ 4.12
USP42-202ENST00000404008 CCDC7Q96M83 1385 aa40.75■■■■■ 4.11
USP42-202ENST00000404008 NRKQ7Z2Y5 1582 aa40.74■■■■■ 4.11
USP42-202ENST00000404008 WASHC2AQ641Q2 1341 aa40.73■■■■■ 4.11
USP42-202ENST00000404008 USP6P35125 1406 aa40.73■■■■■ 4.11
USP42-202ENST00000404008 ILDR1Q86SU0 546 aaPredicted RBP40.73■■■■■ 4.11
USP42-202ENST00000404008 ZNF692Q9BU19 519 aaPredicted RBP40.72■■■■■ 4.11
USP42-202ENST00000404008 A0A1W2PP64 1363 aa40.71■■■■■ 4.11
USP42-202ENST00000404008 TERF2IPQ9NYB0 399 aa40.71■■■■■ 4.11
USP42-202ENST00000404008 SBNO1A3KN83 1393 aa40.7■■■■■ 4.11
USP42-202ENST00000404008 ANKRD36BQ8N2N9 1353 aa40.7■■■■■ 4.11
USP42-202ENST00000404008 ALS2Q96Q42 1657 aa40.7■■■■■ 4.11
USP42-202ENST00000404008 HDGFL2Q7Z4V5 671 aaPredicted RBP40.69■■■■■ 4.1
USP42-202ENST00000404008 KTN1Q86UP2 1357 aaKnown RBP40.69■■■■■ 4.1
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms