RNA–Protein interactions for RNA: ENST00000402555.2

HMGB1P20-201, Transcript of high mobility group box 1 pseudogene 20, humanhuman

BASIC

Gene HMGB1P20, Length 677 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P20-201ENST00000402555 TBX22Q9Y458 520 aa8.6□□□□□ -1.03
HMGB1P20-201ENST00000402555 NEXMIFQ5QGS0 1516 aa8.59□□□□□ -1.03
HMGB1P20-201ENST00000402555 NRXN3Q9Y4C0 1643 aa8.59□□□□□ -1.03
HMGB1P20-201ENST00000402555 PLEKHG5O94827 1062 aa8.59□□□□□ -1.03
HMGB1P20-201ENST00000402555 LHX8Q68G74 356 aa8.59□□□□□ -1.03
HMGB1P20-201ENST00000402555 RAB3GAP2Q9H2M9 1393 aa8.59□□□□□ -1.03
HMGB1P20-201ENST00000402555 NKTRP30414 1462 aaKnown RBP8.58□□□□□ -1.04
HMGB1P20-201ENST00000402555 DIP2AQ14689 1571 aa8.58□□□□□ -1.04
HMGB1P20-201ENST00000402555 PTPRUQ92729 1446 aa8.58□□□□□ -1.04
HMGB1P20-201ENST00000402555 SETBP1Q9Y6X0 1596 aa8.57□□□□□ -1.04
HMGB1P20-201ENST00000402555 CCDC144AA2RUR9 1427 aa8.56□□□□□ -1.04
HMGB1P20-201ENST00000402555 RGL3Q3MIN7 710 aa8.56□□□□□ -1.04
HMGB1P20-201ENST00000402555 AMOTL2Q9Y2J4 779 aa8.56□□□□□ -1.04
HMGB1P20-201ENST00000402555 CCDC61Q9Y6R9 512 aa8.56□□□□□ -1.04
HMGB1P20-201ENST00000402555 METP08581 1390 aa8.56□□□□□ -1.04
HMGB1P20-201ENST00000402555 DISP3Q9P2K9 1392 aa8.56□□□□□ -1.04
HMGB1P20-201ENST00000402555 C14orf37Q86TY3 774 aa8.55□□□□□ -1.04
HMGB1P20-201ENST00000402555 TSPYL2Q9H2G4 693 aaPredicted RBP8.55□□□□□ -1.04
HMGB1P20-201ENST00000402555 MSH6P52701 1360 aa8.55□□□□□ -1.04
HMGB1P20-201ENST00000402555 PIK3R4Q99570 1358 aa8.55□□□□□ -1.04
HMGB1P20-201ENST00000402555 PPLO60437 1756 aa8.55□□□□□ -1.04
HMGB1P20-201ENST00000402555 XRN1Q8IZH2 1706 aaKnown RBP8.54□□□□□ -1.04
HMGB1P20-201ENST00000402555 PLCD3Q8N3E9 789 aa8.54□□□□□ -1.04
HMGB1P20-201ENST00000402555 SPATA31E1Q6ZUB1 1445 aa8.54□□□□□ -1.04
HMGB1P20-201ENST00000402555 RPGRIP1LQ68CZ1 1315 aa8.54□□□□□ -1.04
HMGB1P20-201ENST00000402555 ROBO1Q9Y6N7 1651 aa8.53□□□□□ -1.04
HMGB1P20-201ENST00000402555 VGFO15240 615 aaPredicted RBP8.53□□□□□ -1.04
HMGB1P20-201ENST00000402555 MS4A3Q96HJ5 214 aa8.53□□□□□ -1.04
HMGB1P20-201ENST00000402555 ADGRF5Q8IZF2 1346 aa8.53□□□□□ -1.04
HMGB1P20-201ENST00000402555 SETD1AO15047 1707 aaKnown RBP8.52□□□□□ -1.05
HMGB1P20-201ENST00000402555 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.52□□□□□ -1.05
HMGB1P20-201ENST00000402555 RASEFQ8IZ41 740 aa8.52□□□□□ -1.05
HMGB1P20-201ENST00000402555 SLAIN2Q9P270 581 aa8.52□□□□□ -1.05
HMGB1P20-201ENST00000402555 FAM135BQ49AJ0 1406 aa8.52□□□□□ -1.05
HMGB1P20-201ENST00000402555 MED1Q15648 1581 aaPredicted RBP8.51□□□□□ -1.05
HMGB1P20-201ENST00000402555 IFT172Q9UG01 1749 aa8.51□□□□□ -1.05
HMGB1P20-201ENST00000402555 ILDR2Q71H61 639 aa8.5□□□□□ -1.05
HMGB1P20-201ENST00000402555 KIF12Q96FN5 646 aa8.5□□□□□ -1.05
HMGB1P20-201ENST00000402555 C19orf44Q9H6X5 657 aa8.5□□□□□ -1.05
HMGB1P20-201ENST00000402555 ZBTB47Q9UFB7 747 aaPredicted RBP8.5□□□□□ -1.05
HMGB1P20-201ENST00000402555 NCOA3Q9Y6Q9 1424 aa8.5□□□□□ -1.05
HMGB1P20-201ENST00000402555 ACIN1Q9UKV3 1341 aaKnown RBP8.5□□□□□ -1.05
HMGB1P20-201ENST00000402555 ANKRD30BQ9BXX2 1392 aa8.49□□□□□ -1.05
HMGB1P20-201ENST00000402555 ROBO2Q9HCK4 1378 aa8.49□□□□□ -1.05
HMGB1P20-201ENST00000402555 ATF3P18847 181 aa8.49□□□□□ -1.05
HMGB1P20-201ENST00000402555 NALCNQ8IZF0 1738 aa8.49□□□□□ -1.05
HMGB1P20-201ENST00000402555 ADGRL3Q9HAR2 1447 aa8.48□□□□□ -1.05
HMGB1P20-201ENST00000402555 HRCP23327 699 aa8.48□□□□□ -1.05
HMGB1P20-201ENST00000402555 NUBP1P53384 320 aa8.48□□□□□ -1.05
HMGB1P20-201ENST00000402555 ASTLQ6HA08 431 aaPredicted RBP8.48□□□□□ -1.05
HMGB1P20-201ENST00000402555 TMEM132EQ6IEE7 984 aa8.48□□□□□ -1.05
HMGB1P20-201ENST00000402555 CADPS2Q86UW7 1296 aa8.48□□□□□ -1.05
HMGB1P20-201ENST00000402555 STK26Q9P289 416 aa8.48□□□□□ -1.05
HMGB1P20-201ENST00000402555 PHLPP1O60346 1717 aa8.48□□□□□ -1.05
HMGB1P20-201ENST00000402555 ASXL1Q8IXJ9 1541 aa8.48□□□□□ -1.05
HMGB1P20-201ENST00000402555 PIK3C2GO75747 1445 aa8.47□□□□□ -1.05
HMGB1P20-201ENST00000402555 PTCH1Q13635 1447 aa8.47□□□□□ -1.05
HMGB1P20-201ENST00000402555 FBXO3Q9UK99 471 aa8.47□□□□□ -1.05
HMGB1P20-201ENST00000402555 MST1RQ04912 1400 aa8.46□□□□□ -1.05
HMGB1P20-201ENST00000402555 CFAP70Q5T0N1 1121 aa8.46□□□□□ -1.06
HMGB1P20-201ENST00000402555 BRINP3Q76B58 766 aa8.46□□□□□ -1.06
HMGB1P20-201ENST00000402555 PELP1Q8IZL8 1130 aaKnown RBP8.46□□□□□ -1.06
HMGB1P20-201ENST00000402555 DCCP43146 1447 aa8.46□□□□□ -1.06
HMGB1P20-201ENST00000402555 COL16A1Q07092 1604 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P20-201ENST00000402555 ATMINO43313 823 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P20-201ENST00000402555 WAPLQ7Z5K2 1190 aa8.45□□□□□ -1.06
HMGB1P20-201ENST00000402555 KDM2AQ9Y2K7 1162 aa8.45□□□□□ -1.06
HMGB1P20-201ENST00000402555 LRPPRCP42704 1394 aaKnown RBP8.45□□□□□ -1.06
HMGB1P20-201ENST00000402555 PLEKHH1Q9ULM0 1364 aa8.45□□□□□ -1.06
HMGB1P20-201ENST00000402555 PRAG1Q86YV5 1406 aa8.45□□□□□ -1.06
HMGB1P20-201ENST00000402555 MYOM2P54296 1465 aa8.45□□□□□ -1.06
HMGB1P20-201ENST00000402555 NRXN1Q9ULB1 1477 aa8.45□□□□□ -1.06
HMGB1P20-201ENST00000402555 MAP3K13O43283 966 aa8.44□□□□□ -1.06
HMGB1P20-201ENST00000402555 DDX17Q92841 729 aaKnown RBP8.44□□□□□ -1.06
HMGB1P20-201ENST00000402555 C14orf93Q9H972 538 aaKnown RBP8.44□□□□□ -1.06
HMGB1P20-201ENST00000402555 YTHDC2Q9H6S0 1430 aaKnown RBP8.44□□□□□ -1.06
HMGB1P20-201ENST00000402555 AHDC1Q5TGY3 1603 aaPredicted RBP8.43□□□□□ -1.06
HMGB1P20-201ENST00000402555 DCAF11Q8TEB1 546 aa8.43□□□□□ -1.06
HMGB1P20-201ENST00000402555 DHX57Q6P158 1386 aaKnown RBP8.43□□□□□ -1.06
HMGB1P20-201ENST00000402555 ABCC11Q96J66 1382 aa8.43□□□□□ -1.06
HMGB1P20-201ENST00000402555 JCADQ9P266 1359 aa8.43□□□□□ -1.06
HMGB1P20-201ENST00000402555 TECPR2O15040 1411 aa8.43□□□□□ -1.06
HMGB1P20-201ENST00000402555 C1orf167Q5SNV9 1468 aa8.43□□□□□ -1.06
HMGB1P20-201ENST00000402555 KNDC1Q76NI1 1749 aa8.43□□□□□ -1.06
HMGB1P20-201ENST00000402555 NUTM2FA1L443 756 aa8.42□□□□□ -1.06
HMGB1P20-201ENST00000402555 ORAI2Q96SN7 254 aa8.42□□□□□ -1.06
HMGB1P20-201ENST00000402555 LAMC1P11047 1609 aa8.41□□□□□ -1.06
HMGB1P20-201ENST00000402555 NHSL1Q5SYE7 1610 aa8.41□□□□□ -1.06
HMGB1P20-201ENST00000402555 SAFB2Q14151 953 aaKnown RBP eCLIP8.41□□□□□ -1.06
HMGB1P20-201ENST00000402555 RGS17Q9UGC6 210 aaPredicted RBP8.41□□□□□ -1.06
HMGB1P20-201ENST00000402555 LRP6O75581 1613 aa8.4□□□□□ -1.06
HMGB1P20-201ENST00000402555 ADGRB1O14514 1584 aa8.4□□□□□ -1.06
HMGB1P20-201ENST00000402555 CDC42BPGQ6DT37 1551 aa8.4□□□□□ -1.06
HMGB1P20-201ENST00000402555 POTEB2H3BUK9 544 aa8.4□□□□□ -1.06
HMGB1P20-201ENST00000402555 TRPC6Q9Y210 931 aa8.4□□□□□ -1.06
HMGB1P20-201ENST00000402555 NUTM2BA6NNL0 878 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P20-201ENST00000402555 NUTM2EB1AL46 878 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P20-201ENST00000402555 ESCO1Q5FWF5 840 aa8.39□□□□□ -1.07
HMGB1P20-201ENST00000402555 NUTM2AQ8IVF1 878 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P20-201ENST00000402555 FAM212AQ96EL1 285 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms