RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 RGS17Q9UGC6 210 aaPredicted RBP13.67□□□□□ -0.22
VPS53-203ENST00000401468 NRXN3Q9Y4C0 1643 aa13.67□□□□□ -0.22
VPS53-203ENST00000401468 PCGF6Q9BYE7 350 aa13.65□□□□□ -0.22
VPS53-203ENST00000401468 TMEM94Q12767 1356 aa13.65□□□□□ -0.22
VPS53-203ENST00000401468 PHLPP1O60346 1717 aa13.64□□□□□ -0.23
VPS53-203ENST00000401468 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.64□□□□□ -0.23
VPS53-203ENST00000401468 PROSER2Q86WR7 435 aaPredicted RBP13.64□□□□□ -0.23
VPS53-203ENST00000401468 SLC52A1Q9NWF4 448 aa13.64□□□□□ -0.23
VPS53-203ENST00000401468 SETD1AO15047 1707 aaKnown RBP13.62□□□□□ -0.23
VPS53-203ENST00000401468 SRCAPQ6ZRS2 3230 aa13.62□□□□□ -0.23
VPS53-203ENST00000401468 PPLO60437 1756 aa13.61□□□□□ -0.23
VPS53-203ENST00000401468 LHX8Q68G74 356 aa13.61□□□□□ -0.23
VPS53-203ENST00000401468 TRIM52Q96A61 297 aa13.61□□□□□ -0.23
VPS53-203ENST00000401468 PLEKHG1Q9ULL1 1385 aa13.6□□□□□ -0.23
VPS53-203ENST00000401468 TRPM2O94759 1503 aa13.6□□□□□ -0.23
VPS53-203ENST00000401468 KCNA6P17658 529 aa13.6□□□□□ -0.23
VPS53-203ENST00000401468 ZNF326Q5BKZ1 582 aaKnown RBP13.6□□□□□ -0.23
VPS53-203ENST00000401468 ADAMTS13Q76LX8 1427 aa13.6□□□□□ -0.23
VPS53-203ENST00000401468 ZBTB47Q9UFB7 747 aaPredicted RBP13.6□□□□□ -0.23
VPS53-203ENST00000401468 NEXMIFQ5QGS0 1516 aa13.59□□□□□ -0.23
VPS53-203ENST00000401468 NALCNQ8IZF0 1738 aa13.59□□□□□ -0.23
VPS53-203ENST00000401468 RASEFQ8IZ41 740 aa13.58□□□□□ -0.24
VPS53-203ENST00000401468 MPHOSPH9Q99550 1183 aa13.58□□□□□ -0.24
VPS53-203ENST00000401468 FBXO3Q9UK99 471 aa13.58□□□□□ -0.24
VPS53-203ENST00000401468 CCDC61Q9Y6R9 512 aa13.58□□□□□ -0.24
VPS53-203ENST00000401468 NKTRP30414 1462 aaKnown RBP13.58□□□□□ -0.24
VPS53-203ENST00000401468 XRN1Q8IZH2 1706 aaKnown RBP13.58□□□□□ -0.24
VPS53-203ENST00000401468 PTPRUQ92729 1446 aa13.57□□□□□ -0.24
VPS53-203ENST00000401468 MS4A3Q96HJ5 214 aa13.57□□□□□ -0.24
VPS53-203ENST00000401468 DHX57Q6P158 1386 aaKnown RBP13.57□□□□□ -0.24
VPS53-203ENST00000401468 C14orf37Q86TY3 774 aa13.56□□□□□ -0.24
VPS53-203ENST00000401468 DIP2AQ14689 1571 aa13.56□□□□□ -0.24
VPS53-203ENST00000401468 IFT172Q9UG01 1749 aa13.54□□□□□ -0.24
VPS53-203ENST00000401468 MSH6P52701 1360 aa13.53□□□□□ -0.24
VPS53-203ENST00000401468 ANKRD30BQ9BXX2 1392 aa13.53□□□□□ -0.24
VPS53-203ENST00000401468 SETBP1Q9Y6X0 1596 aa13.53□□□□□ -0.24
VPS53-203ENST00000401468 POTEAQ6S8J7 498 aa13.52□□□□□ -0.25
VPS53-203ENST00000401468 COL16A1Q07092 1604 aaPredicted RBP13.52□□□□□ -0.25
VPS53-203ENST00000401468 METP08581 1390 aa13.51□□□□□ -0.25
VPS53-203ENST00000401468 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.51□□□□□ -0.25
VPS53-203ENST00000401468 AMOTL2Q9Y2J4 779 aa13.5□□□□□ -0.25
VPS53-203ENST00000401468 TBX22Q9Y458 520 aa13.5□□□□□ -0.25
VPS53-203ENST00000401468 RGPD8O14715 1765 aaPredicted RBP13.5□□□□□ -0.25
VPS53-203ENST00000401468 HDGFP51858 240 aaKnown RBP13.49□□□□□ -0.25
VPS53-203ENST00000401468 KIF12Q96FN5 646 aa13.49□□□□□ -0.25
VPS53-203ENST00000401468 SLAIN2Q9P270 581 aa13.48□□□□□ -0.25
VPS53-203ENST00000401468 FAM135BQ49AJ0 1406 aa13.47□□□□□ -0.25
VPS53-203ENST00000401468 CLSPNQ9HAW4 1339 aa13.47□□□□□ -0.25
VPS53-203ENST00000401468 NUBP1P53384 320 aa13.47□□□□□ -0.25
VPS53-203ENST00000401468 SPATA31E1Q6ZUB1 1445 aa13.46□□□□□ -0.26
VPS53-203ENST00000401468 NHSL1Q5SYE7 1610 aa13.46□□□□□ -0.26
VPS53-203ENST00000401468 RGL3Q3MIN7 710 aa13.45□□□□□ -0.26
VPS53-203ENST00000401468 DDX17Q92841 729 aaKnown RBP13.45□□□□□ -0.26
VPS53-203ENST00000401468 CCDC144AA2RUR9 1427 aa13.45□□□□□ -0.26
VPS53-203ENST00000401468 SHPRHQ149N8 1683 aa13.44□□□□□ -0.26
VPS53-203ENST00000401468 MAP3K13O43283 966 aa13.44□□□□□ -0.26
VPS53-203ENST00000401468 ATF3P18847 181 aa13.43□□□□□ -0.26
VPS53-203ENST00000401468 FAM212AQ96EL1 285 aa13.43□□□□□ -0.26
VPS53-203ENST00000401468 LRP6O75581 1613 aa13.42□□□□□ -0.26
VPS53-203ENST00000401468 ASXL1Q8IXJ9 1541 aa13.42□□□□□ -0.26
VPS53-203ENST00000401468 AHDC1Q5TGY3 1603 aaPredicted RBP13.42□□□□□ -0.26
VPS53-203ENST00000401468 ASTLQ6HA08 431 aaPredicted RBP13.41□□□□□ -0.26
VPS53-203ENST00000401468 PELP1Q8IZL8 1130 aaKnown RBP13.41□□□□□ -0.26
VPS53-203ENST00000401468 UPF1Q92900 1129 aaKnown RBP eCLIP13.41□□□□□ -0.26
VPS53-203ENST00000401468 PIK3R4Q99570 1358 aa13.41□□□□□ -0.26
VPS53-203ENST00000401468 ATMINO43313 823 aaPredicted RBP13.4□□□□□ -0.26
VPS53-203ENST00000401468 VASPP50552 380 aaPredicted RBP13.4□□□□□ -0.26
VPS53-203ENST00000401468 C19orf44Q9H6X5 657 aa13.4□□□□□ -0.26
VPS53-203ENST00000401468 ADGRF5Q8IZF2 1346 aa13.39□□□□□ -0.27
VPS53-203ENST00000401468 MST1RQ04912 1400 aa13.39□□□□□ -0.27
VPS53-203ENST00000401468 NUTM2BA6NNL0 878 aaPredicted RBP13.39□□□□□ -0.27
VPS53-203ENST00000401468 NUTM2EB1AL46 878 aaPredicted RBP13.39□□□□□ -0.27
VPS53-203ENST00000401468 BRINP3Q76B58 766 aa13.39□□□□□ -0.27
VPS53-203ENST00000401468 NUTM2AQ8IVF1 878 aaPredicted RBP13.39□□□□□ -0.27
VPS53-203ENST00000401468 STK26Q9P289 416 aa13.39□□□□□ -0.27
VPS53-203ENST00000401468 ROBO2Q9HCK4 1378 aa13.39□□□□□ -0.27
VPS53-203ENST00000401468 CADPS2Q86UW7 1296 aa13.38□□□□□ -0.27
VPS53-203ENST00000401468 KNDC1Q76NI1 1749 aa13.38□□□□□ -0.27
VPS53-203ENST00000401468 ADGRL3Q9HAR2 1447 aa13.38□□□□□ -0.27
VPS53-203ENST00000401468 KLHL34Q8N239 644 aa13.37□□□□□ -0.27
VPS53-203ENST00000401468 JCADQ9P266 1359 aa13.36□□□□□ -0.27
VPS53-203ENST00000401468 NUTM2FA1L443 756 aa13.36□□□□□ -0.27
VPS53-203ENST00000401468 TMEM132EQ6IEE7 984 aa13.36□□□□□ -0.27
VPS53-203ENST00000401468 MYOM2P54296 1465 aa13.36□□□□□ -0.27
VPS53-203ENST00000401468 NRXN1Q9ULB1 1477 aa13.36□□□□□ -0.27
VPS53-203ENST00000401468 NCOA3Q9Y6Q9 1424 aa13.35□□□□□ -0.27
VPS53-203ENST00000401468 FMN2Q9NZ56 1722 aa13.34□□□□□ -0.27
VPS53-203ENST00000401468 VGFO15240 615 aaPredicted RBP13.34□□□□□ -0.27
VPS53-203ENST00000401468 MEX3CQ5U5Q3 659 aaKnown RBP13.34□□□□□ -0.27
VPS53-203ENST00000401468 METRNQ9UJH8 293 aa13.34□□□□□ -0.27
VPS53-203ENST00000401468 TRPC6Q9Y210 931 aa13.34□□□□□ -0.27
VPS53-203ENST00000401468 PCDHB13Q9Y5F0 798 aa13.34□□□□□ -0.27
VPS53-203ENST00000401468 RPGRIP1LQ68CZ1 1315 aa13.34□□□□□ -0.27
VPS53-203ENST00000401468 PLEKHH1Q9ULM0 1364 aa13.33□□□□□ -0.27
VPS53-203ENST00000401468 MARF1Q9Y4F3 1742 aaKnown RBP13.33□□□□□ -0.27
VPS53-203ENST00000401468 ATN1P54259 1190 aaPredicted RBP13.33□□□□□ -0.28
VPS53-203ENST00000401468 DCAF8Q5TAQ9 597 aa13.33□□□□□ -0.28
VPS53-203ENST00000401468 WAPLQ7Z5K2 1190 aa13.33□□□□□ -0.28
VPS53-203ENST00000401468 SLC39A7Q92504 469 aa13.33□□□□□ -0.28
VPS53-203ENST00000401468 ORAI2Q96SN7 254 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms