RNA–Protein interactions for RNA: ENST00000400227.7

CSNK2A1-204, Transcript of casein kinase 2 alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CSNK2A1, Length 1,499 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK2A1-204ENST00000400227 RSF1Q96T23 1441 aaPredicted RBP11.09□□□□□ -0.63
CSNK2A1-204ENST00000400227 CLK2P49760 499 aaKnown RBP11.09□□□□□ -0.63
CSNK2A1-204ENST00000400227 POLR3EQ9NVU0 708 aa11.09□□□□□ -0.63
CSNK2A1-204ENST00000400227 PCDHGC3Q9UN70 934 aa11.09□□□□□ -0.63
CSNK2A1-204ENST00000400227 SALL2Q9Y467 1007 aaPredicted RBP11.09□□□□□ -0.63
CSNK2A1-204ENST00000400227 Q3C1V9 767 aa11.08□□□□□ -0.64
CSNK2A1-204ENST00000400227 LIMD1Q9UGP4 676 aa11.08□□□□□ -0.64
CSNK2A1-204ENST00000400227 TUSC1Q2TAM9 212 aa11.07□□□□□ -0.64
CSNK2A1-204ENST00000400227 THAP11Q96EK4 314 aa11.07□□□□□ -0.64
CSNK2A1-204ENST00000400227 BRICD5Q6PL45 260 aa11.06□□□□□ -0.64
CSNK2A1-204ENST00000400227 FMNL1O95466 1100 aaPredicted RBP11.06□□□□□ -0.64
CSNK2A1-204ENST00000400227 PCDHB15Q9Y5E8 787 aa11.06□□□□□ -0.64
CSNK2A1-204ENST00000400227 TLL1O43897 1013 aa11.05□□□□□ -0.64
CSNK2A1-204ENST00000400227 IFFO2Q5TF58 517 aa11.05□□□□□ -0.64
CSNK2A1-204ENST00000400227 RNF19BQ6ZMZ0 732 aa11.05□□□□□ -0.64
CSNK2A1-204ENST00000400227 PLA2G2EQ9NZK7 142 aa11.05□□□□□ -0.64
CSNK2A1-204ENST00000400227 SPSB2Q99619 263 aa11.04□□□□□ -0.64
CSNK2A1-204ENST00000400227 ADH1BP00325 375 aa11.03□□□□□ -0.64
CSNK2A1-204ENST00000400227 PRPF38BQ5VTL8 546 aaKnown RBP11.03□□□□□ -0.64
CSNK2A1-204ENST00000400227 PROCA1Q8NCQ7 364 aaPredicted RBP11.03□□□□□ -0.64
CSNK2A1-204ENST00000400227 NKX2-3Q8TAU0 364 aa11.03□□□□□ -0.64
CSNK2A1-204ENST00000400227 CSPP1Q1MSJ5 1256 aa11.02□□□□□ -0.65
CSNK2A1-204ENST00000400227 TMEM132AQ24JP5 1023 aa11.02□□□□□ -0.65
CSNK2A1-204ENST00000400227 SYMPKQ92797 1274 aaKnown RBP11.02□□□□□ -0.65
CSNK2A1-204ENST00000400227 PCMTD1Q96MG8 357 aaPredicted RBP11.02□□□□□ -0.65
CSNK2A1-204ENST00000400227 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.02□□□□□ -0.65
CSNK2A1-204ENST00000400227 C6orf229H3BNL8 230 aa11.01□□□□□ -0.65
CSNK2A1-204ENST00000400227 MTMR2Q13614 643 aa11.01□□□□□ -0.65
CSNK2A1-204ENST00000400227 ZBTB3Q9H5J0 574 aa11.01□□□□□ -0.65
CSNK2A1-204ENST00000400227 LILRB3O75022 631 aa11□□□□□ -0.65
CSNK2A1-204ENST00000400227 HRCP23327 699 aa11□□□□□ -0.65
CSNK2A1-204ENST00000400227 USB1Q9BQ65 265 aaKnown RBP11□□□□□ -0.65
CSNK2A1-204ENST00000400227 RB1CC1Q8TDY2 1594 aa11□□□□□ -0.65
CSNK2A1-204ENST00000400227 SPDYE5A6NIY4 337 aa11□□□□□ -0.65
CSNK2A1-204ENST00000400227 QPCTQ16769 361 aa11□□□□□ -0.65
CSNK2A1-204ENST00000400227 RETREG3Q86VR2 466 aa11□□□□□ -0.65
CSNK2A1-204ENST00000400227 CABLES1Q8TDN4 633 aa11□□□□□ -0.65
CSNK2A1-204ENST00000400227 MSS51Q4VC12 460 aa10.99□□□□□ -0.65
CSNK2A1-204ENST00000400227 FAM160A2Q8N612 972 aaPredicted RBP10.99□□□□□ -0.65
CSNK2A1-204ENST00000400227 ATP1B4Q9UN42 357 aaPredicted RBP10.99□□□□□ -0.65
CSNK2A1-204ENST00000400227 NUTM2BA6NNL0 878 aaPredicted RBP10.96□□□□□ -0.65
CSNK2A1-204ENST00000400227 NUTM2EB1AL46 878 aaPredicted RBP10.96□□□□□ -0.65
CSNK2A1-204ENST00000400227 NUTM2DQ5VT03 806 aaPredicted RBP10.96□□□□□ -0.65
CSNK2A1-204ENST00000400227 PPP2R2DQ66LE6 453 aa10.96□□□□□ -0.65
CSNK2A1-204ENST00000400227 NUTM2AQ8IVF1 878 aaPredicted RBP10.96□□□□□ -0.65
CSNK2A1-204ENST00000400227 SLC6A16Q9GZN6 736 aa10.96□□□□□ -0.65
CSNK2A1-204ENST00000400227 RTL5Q5HYW3 569 aaPredicted RBP10.94□□□□□ -0.66
CSNK2A1-204ENST00000400227 FBXO31Q5XUX0 539 aaPredicted RBP10.94□□□□□ -0.66
CSNK2A1-204ENST00000400227 PRR7Q8TB68 274 aa10.94□□□□□ -0.66
CSNK2A1-204ENST00000400227 S1PR4O95977 384 aa10.93□□□□□ -0.66
CSNK2A1-204ENST00000400227 PRDM9Q9NQV7 894 aa10.93□□□□□ -0.66
CSNK2A1-204ENST00000400227 CECR2Q9BXF3 1484 aa10.93□□□□□ -0.66
CSNK2A1-204ENST00000400227 CFAP99D6REC4 459 aa10.93□□□□□ -0.66
CSNK2A1-204ENST00000400227 MROH2BQ7Z745 1585 aa10.92□□□□□ -0.66
CSNK2A1-204ENST00000400227 A0A0G2JS52 829 aa10.92□□□□□ -0.66
CSNK2A1-204ENST00000400227 GGCXP38435 758 aa10.92□□□□□ -0.66
CSNK2A1-204ENST00000400227 MMP16P51512 607 aa10.92□□□□□ -0.66
CSNK2A1-204ENST00000400227 PPP1R18Q6NYC8 613 aa10.92□□□□□ -0.66
CSNK2A1-204ENST00000400227 DXOO77932 396 aaKnown RBP10.91□□□□□ -0.66
CSNK2A1-204ENST00000400227 JUNDP17535 347 aa10.91□□□□□ -0.66
CSNK2A1-204ENST00000400227 DESI1Q6ICB0 168 aa10.91□□□□□ -0.66
CSNK2A1-204ENST00000400227 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.9□□□□□ -0.66
CSNK2A1-204ENST00000400227 LOC105371045A0A1W2PR82 267 aa10.89□□□□□ -0.67
CSNK2A1-204ENST00000400227 RFC5P40937 340 aa10.89□□□□□ -0.67
CSNK2A1-204ENST00000400227 RNF223E7ERA6 249 aa10.87□□□□□ -0.67
CSNK2A1-204ENST00000400227 WIZO95785 1651 aa10.87□□□□□ -0.67
CSNK2A1-204ENST00000400227 HELBQ8NG08 1087 aaPredicted RBP10.87□□□□□ -0.67
CSNK2A1-204ENST00000400227 TSC1Q92574 1164 aa10.87□□□□□ -0.67
CSNK2A1-204ENST00000400227 PPEF1O14829 653 aaPredicted RBP10.86□□□□□ -0.67
CSNK2A1-204ENST00000400227 ANKLE1Q8NAG6 615 aa10.86□□□□□ -0.67
CSNK2A1-204ENST00000400227 LYPD8Q6UX82 237 aa10.85□□□□□ -0.67
CSNK2A1-204ENST00000400227 UNC13AQ9UPW8 1703 aa10.84□□□□□ -0.67
CSNK2A1-204ENST00000400227 PTPRNQ16849 979 aa10.84□□□□□ -0.67
CSNK2A1-204ENST00000400227 TMEM259Q4ZIN3 620 aa10.84□□□□□ -0.67
CSNK2A1-204ENST00000400227 FCF1Q9Y324 198 aaKnown RBP10.84□□□□□ -0.67
CSNK2A1-204ENST00000400227 BAZ1AQ9NRL2 1556 aaPredicted RBP10.83□□□□□ -0.68
CSNK2A1-204ENST00000400227 AP1G2O75843 785 aa10.83□□□□□ -0.68
CSNK2A1-204ENST00000400227 CTDSPL2Q05D32 466 aa10.83□□□□□ -0.68
CSNK2A1-204ENST00000400227 NUDT12Q9BQG2 462 aa10.82□□□□□ -0.68
CSNK2A1-204ENST00000400227 PER1O15534 1290 aaPredicted RBP10.81□□□□□ -0.68
CSNK2A1-204ENST00000400227 CCNYL3P0C7X3 344 aa10.81□□□□□ -0.68
CSNK2A1-204ENST00000400227 PCGF6Q9BYE7 350 aa10.81□□□□□ -0.68
CSNK2A1-204ENST00000400227 USP17L8P0C7I0 530 aa10.79□□□□□ -0.68
CSNK2A1-204ENST00000400227 PLA2G2CQ5R387 149 aa10.79□□□□□ -0.68
CSNK2A1-204ENST00000400227 CCDC24Q8N4L8 307 aa10.79□□□□□ -0.68
CSNK2A1-204ENST00000400227 BANK1Q8NDB2 785 aa10.79□□□□□ -0.68
CSNK2A1-204ENST00000400227 EVA1BQ9NVM1 165 aa10.79□□□□□ -0.68
CSNK2A1-204ENST00000400227 EIF4G1Q04637 1599 aaKnown RBP10.78□□□□□ -0.68
CSNK2A1-204ENST00000400227 F12P00748 615 aaPredicted RBP10.77□□□□□ -0.69
CSNK2A1-204ENST00000400227 KCNH2Q12809 1159 aa10.76□□□□□ -0.69
CSNK2A1-204ENST00000400227 LRRN4Q8WUT4 740 aa10.76□□□□□ -0.69
CSNK2A1-204ENST00000400227 EMID1Q96A84 441 aaPredicted RBP10.75□□□□□ -0.69
CSNK2A1-204ENST00000400227 SMARCA4P51532 1647 aa10.75□□□□□ -0.69
CSNK2A1-204ENST00000400227 RGS20O76081 388 aa10.74□□□□□ -0.69
CSNK2A1-204ENST00000400227 CTHP32929 405 aa10.74□□□□□ -0.69
CSNK2A1-204ENST00000400227 PTCRAQ6ISU1 281 aaPredicted RBP10.74□□□□□ -0.69
CSNK2A1-204ENST00000400227 MAP10Q9P2G4 905 aa10.74□□□□□ -0.69
CSNK2A1-204ENST00000400227 ZBTB24O43167 697 aaPredicted RBP10.73□□□□□ -0.69
CSNK2A1-204ENST00000400227 RPIAP49247 311 aa10.73□□□□□ -0.69
CSNK2A1-204ENST00000400227 LIAT1Q6ZQX7 453 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms