RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 SETBP1Q9Y6X0 1596 aa16.08■□□□□ 0.17
SKA3-203ENST00000400018 LAMC1P11047 1609 aa16.08■□□□□ 0.16
SKA3-203ENST00000400018 TULP4Q9NRJ4 1543 aa16.08■□□□□ 0.16
SKA3-203ENST00000400018 FBLN1P23142 703 aa16.08■□□□□ 0.16
SKA3-203ENST00000400018 LRPPRCP42704 1394 aaKnown RBP16.07■□□□□ 0.16
SKA3-203ENST00000400018 CABP1Q9NZU7 370 aa16.07■□□□□ 0.16
SKA3-203ENST00000400018 PRKRIP1Q9H875 184 aaPredicted RBP16.06■□□□□ 0.16
SKA3-203ENST00000400018 PER1O15534 1290 aaPredicted RBP16.06■□□□□ 0.16
SKA3-203ENST00000400018 PMFBP1Q8TBY8 1022 aa16.05■□□□□ 0.16
SKA3-203ENST00000400018 TBX22Q9Y458 520 aa16.04■□□□□ 0.16
SKA3-203ENST00000400018 EVC2Q86UK5 1308 aa16.04■□□□□ 0.16
SKA3-203ENST00000400018 C14orf37Q86TY3 774 aa16.04■□□□□ 0.16
SKA3-203ENST00000400018 ABCC11Q96J66 1382 aa16.03■□□□□ 0.16
SKA3-203ENST00000400018 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.03■□□□□ 0.16
SKA3-203ENST00000400018 PRR36Q9H6K5 1346 aa16.03■□□□□ 0.16
SKA3-203ENST00000400018 NPHP4O75161 1426 aaPredicted RBP16.03■□□□□ 0.16
SKA3-203ENST00000400018 FAM9BQ8IZU0 186 aa16.02■□□□□ 0.16
SKA3-203ENST00000400018 MED14O60244 1454 aa16.02■□□□□ 0.16
SKA3-203ENST00000400018 LMTK3Q96Q04 1460 aa16.02■□□□□ 0.16
SKA3-203ENST00000400018 POLR1AO95602 1720 aaPredicted RBP16.02■□□□□ 0.15
SKA3-203ENST00000400018 ZRANB1Q9UGI0 708 aa16.02■□□□□ 0.15
SKA3-203ENST00000400018 WASLO00401 505 aaPredicted RBP16.01■□□□□ 0.15
SKA3-203ENST00000400018 ZNF142P52746 1687 aaPredicted RBP16■□□□□ 0.15
SKA3-203ENST00000400018 SIPA1L2Q9P2F8 1722 aaPredicted RBP16■□□□□ 0.15
SKA3-203ENST00000400018 ZNF335Q9H4Z2 1342 aaPredicted RBP16■□□□□ 0.15
SKA3-203ENST00000400018 KNSTRNQ9Y448 316 aa15.99■□□□□ 0.15
SKA3-203ENST00000400018 KDM5AP29375 1690 aaKnown RBP15.99■□□□□ 0.15
SKA3-203ENST00000400018 MYOM1P52179 1685 aa15.99■□□□□ 0.15
SKA3-203ENST00000400018 XPCQ01831 940 aaPredicted RBP15.99■□□□□ 0.15
SKA3-203ENST00000400018 NUDT16Q96DE0 195 aaKnown RBP15.99■□□□□ 0.15
SKA3-203ENST00000400018 SOX12O15370 315 aa15.98■□□□□ 0.15
SKA3-203ENST00000400018 GGNBP2Q9H3C7 697 aa15.98■□□□□ 0.15
SKA3-203ENST00000400018 MRS2Q9HD23 443 aa15.98■□□□□ 0.15
SKA3-203ENST00000400018 PROSER2Q86WR7 435 aaPredicted RBP15.97■□□□□ 0.15
SKA3-203ENST00000400018 DDX17Q92841 729 aaKnown RBP15.97■□□□□ 0.15
SKA3-203ENST00000400018 NUTM2GQ5VZR2 741 aa15.96■□□□□ 0.15
SKA3-203ENST00000400018 NSD3Q9BZ95 1437 aa15.96■□□□□ 0.15
SKA3-203ENST00000400018 AMER1Q5JTC6 1135 aaPredicted RBP15.96■□□□□ 0.15
SKA3-203ENST00000400018 A0A1W2PP64 1363 aa15.96■□□□□ 0.15
SKA3-203ENST00000400018 CDCA8Q53HL2 280 aa15.96■□□□□ 0.14
SKA3-203ENST00000400018 BCL11AQ9H165 835 aa15.95■□□□□ 0.14
SKA3-203ENST00000400018 SALL2Q9Y467 1007 aaPredicted RBP15.94■□□□□ 0.14
SKA3-203ENST00000400018 SBNO2Q9Y2G9 1366 aa15.93■□□□□ 0.14
SKA3-203ENST00000400018 ORAI2Q96SN7 254 aa15.93■□□□□ 0.14
SKA3-203ENST00000400018 RGPD8O14715 1765 aaPredicted RBP15.91■□□□□ 0.14
SKA3-203ENST00000400018 NME9Q86XW9 330 aa15.91■□□□□ 0.14
SKA3-203ENST00000400018 PPIP5K1Q6PFW1 1433 aa15.91■□□□□ 0.14
SKA3-203ENST00000400018 STRCQ7RTU9 1775 aa15.91■□□□□ 0.14
SKA3-203ENST00000400018 TECPR2O15040 1411 aa15.9■□□□□ 0.14
SKA3-203ENST00000400018 CD163L1Q9NR16 1453 aa15.9■□□□□ 0.14
SKA3-203ENST00000400018 CPS1P31327 1500 aa15.9■□□□□ 0.14
SKA3-203ENST00000400018 STRCP1A6NGW2 1772 aa15.9■□□□□ 0.14
SKA3-203ENST00000400018 ACEP12821 1306 aa15.89■□□□□ 0.13
SKA3-203ENST00000400018 KTN1Q86UP2 1357 aaKnown RBP15.89■□□□□ 0.13
SKA3-203ENST00000400018 ESCO1Q5FWF5 840 aa15.89■□□□□ 0.13
SKA3-203ENST00000400018 PPM1GO15355 546 aaPredicted RBP15.88■□□□□ 0.13
SKA3-203ENST00000400018 CCDC61Q9Y6R9 512 aa15.88■□□□□ 0.13
SKA3-203ENST00000400018 FAM135BQ49AJ0 1406 aa15.88■□□□□ 0.13
SKA3-203ENST00000400018 DLC1Q96QB1 1528 aa15.88■□□□□ 0.13
SKA3-203ENST00000400018 CHD2O14647 1828 aaKnown RBP15.88■□□□□ 0.13
SKA3-203ENST00000400018 TMEM94Q12767 1356 aa15.88■□□□□ 0.13
SKA3-203ENST00000400018 PAK3O75914 559 aaPredicted RBP15.87■□□□□ 0.13
SKA3-203ENST00000400018 NKTRP30414 1462 aaKnown RBP15.87■□□□□ 0.13
SKA3-203ENST00000400018 FYB1O15117 783 aa15.87■□□□□ 0.13
SKA3-203ENST00000400018 FOXO3O43524 673 aa15.87■□□□□ 0.13
SKA3-203ENST00000400018 NGDNQ8NEJ9 315 aaKnown RBP15.87■□□□□ 0.13
SKA3-203ENST00000400018 XRN1Q8IZH2 1706 aaKnown RBP15.86■□□□□ 0.13
SKA3-203ENST00000400018 ATP7BP35670 1465 aa15.86■□□□□ 0.13
SKA3-203ENST00000400018 PPP2R1AP30153 589 aa15.86■□□□□ 0.13
SKA3-203ENST00000400018 MORC1Q86VD1 984 aa15.86■□□□□ 0.13
SKA3-203ENST00000400018 LMOD2Q6P5Q4 547 aa15.85■□□□□ 0.13
SKA3-203ENST00000400018 ANKRD36BQ8N2N9 1353 aa15.84■□□□□ 0.13
SKA3-203ENST00000400018 ATAD2Q6PL18 1390 aa15.84■□□□□ 0.13
SKA3-203ENST00000400018 KNDC1Q76NI1 1749 aa15.84■□□□□ 0.13
SKA3-203ENST00000400018 NALCNQ8IZF0 1738 aa15.84■□□□□ 0.13
SKA3-203ENST00000400018 HDGFL2Q7Z4V5 671 aaPredicted RBP15.84■□□□□ 0.13
SKA3-203ENST00000400018 DIP2AQ14689 1571 aa15.84■□□□□ 0.13
SKA3-203ENST00000400018 HNRNPUQ00839 825 aaKnown RBP eCLIP15.83■□□□□ 0.13
SKA3-203ENST00000400018 TERF2IPQ9NYB0 399 aa15.83■□□□□ 0.13
SKA3-203ENST00000400018 PARD3Q8TEW0 1356 aa15.83■□□□□ 0.12
SKA3-203ENST00000400018 PTCH1Q13635 1447 aa15.83■□□□□ 0.12
SKA3-203ENST00000400018 RRS1Q15050 365 aaKnown RBP15.83■□□□□ 0.12
SKA3-203ENST00000400018 MYBBP1AQ9BQG0 1328 aaKnown RBP15.83■□□□□ 0.12
SKA3-203ENST00000400018 CCER2I3L3R5 266 aa15.82■□□□□ 0.12
SKA3-203ENST00000400018 CENPBP07199 599 aaPredicted RBP15.82■□□□□ 0.12
SKA3-203ENST00000400018 SIRT1Q96EB6 747 aa15.82■□□□□ 0.12
SKA3-203ENST00000400018 USP32Q8NFA0 1604 aa15.82■□□□□ 0.12
SKA3-203ENST00000400018 ZBTB7CA1YPR0 619 aa15.81■□□□□ 0.12
SKA3-203ENST00000400018 CGNL1Q0VF96 1302 aa15.8■□□□□ 0.12
SKA3-203ENST00000400018 MTHFSP49914 203 aa15.8■□□□□ 0.12
SKA3-203ENST00000400018 CCDC146Q8IYE0 955 aa15.8■□□□□ 0.12
SKA3-203ENST00000400018 AEBP2Q6ZN18 517 aaPredicted RBP15.8■□□□□ 0.12
SKA3-203ENST00000400018 RALBP1Q15311 655 aa15.79■□□□□ 0.12
SKA3-203ENST00000400018 EMILIN1Q9Y6C2 1016 aa15.79■□□□□ 0.12
SKA3-203ENST00000400018 PIK3R4Q99570 1358 aa15.78■□□□□ 0.12
SKA3-203ENST00000400018 SLC24A1O60721 1099 aa15.78■□□□□ 0.12
SKA3-203ENST00000400018 PNISRQ8TF01 805 aaKnown RBP15.78■□□□□ 0.12
SKA3-203ENST00000400018 PHF8Q9UPP1 1060 aa15.78■□□□□ 0.12
SKA3-203ENST00000400018 NLRP13Q86W25 1043 aa15.77■□□□□ 0.11
SKA3-203ENST00000400018 PRKCSHP14314 528 aaPredicted RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms