RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 CTR9Q6PD62 1173 aa11.57□□□□□ -0.56
SMAD9-203ENST00000399275 MNAT1P51948 309 aa11.56□□□□□ -0.56
SMAD9-203ENST00000399275 EFCAB5A4FU69 1503 aa11.56□□□□□ -0.56
SMAD9-203ENST00000399275 NPHP1O15259 732 aa11.56□□□□□ -0.56
SMAD9-203ENST00000399275 PDE3AQ14432 1141 aa11.56□□□□□ -0.56
SMAD9-203ENST00000399275 CCDC112Q8NEF3 446 aa11.56□□□□□ -0.56
SMAD9-203ENST00000399275 KLHL34Q8N239 644 aa11.56□□□□□ -0.56
SMAD9-203ENST00000399275 C11orf95C9JLR9 678 aaPredicted RBP11.55□□□□□ -0.56
SMAD9-203ENST00000399275 CREBRFQ8IUR6 639 aa11.55□□□□□ -0.56
SMAD9-203ENST00000399275 DZIP1LQ8IYY4 767 aaKnown RBP11.55□□□□□ -0.56
SMAD9-203ENST00000399275 CDCA7LQ96GN5 454 aa11.55□□□□□ -0.56
SMAD9-203ENST00000399275 GRPEL1Q9HAV7 217 aa11.55□□□□□ -0.56
SMAD9-203ENST00000399275 ATP6V1DQ9Y5K8 247 aa11.55□□□□□ -0.56
SMAD9-203ENST00000399275 EIF3JO75822 258 aaKnown RBP11.55□□□□□ -0.56
SMAD9-203ENST00000399275 RAD54L2Q9Y4B4 1467 aa11.55□□□□□ -0.56
SMAD9-203ENST00000399275 DNAAF4Q8WXU2 420 aa11.55□□□□□ -0.56
SMAD9-203ENST00000399275 CLSTN1O94985 981 aa11.55□□□□□ -0.56
SMAD9-203ENST00000399275 CPSF2Q9P2I0 782 aaKnown RBP11.55□□□□□ -0.56
SMAD9-203ENST00000399275 UNC13AQ9UPW8 1703 aa11.54□□□□□ -0.56
SMAD9-203ENST00000399275 GOLGA6L10A0A0M3HER8 536 aa11.54□□□□□ -0.56
SMAD9-203ENST00000399275 IPO7O95373 1038 aaKnown RBP11.54□□□□□ -0.56
SMAD9-203ENST00000399275 BANK1Q8NDB2 785 aa11.54□□□□□ -0.56
SMAD9-203ENST00000399275 FAM107BQ9H098 131 aa11.54□□□□□ -0.56
SMAD9-203ENST00000399275 MRVI1Q9Y6F6 885 aa11.54□□□□□ -0.56
SMAD9-203ENST00000399275 BICRAQ9NZM4 1560 aa11.54□□□□□ -0.56
SMAD9-203ENST00000399275 ANKRD45Q5TZF3 282 aa11.54□□□□□ -0.56
SMAD9-203ENST00000399275 HDGFL2Q7Z4V5 671 aaPredicted RBP11.54□□□□□ -0.56
SMAD9-203ENST00000399275 GTPBP4Q9BZE4 634 aaKnown RBP11.54□□□□□ -0.56
SMAD9-203ENST00000399275 SRPK2P78362 688 aaKnown RBP11.54□□□□□ -0.56
SMAD9-203ENST00000399275 HDAC5Q9UQL6 1122 aa11.54□□□□□ -0.56
SMAD9-203ENST00000399275 ARID4AP29374 1257 aaPredicted RBP11.53□□□□□ -0.56
SMAD9-203ENST00000399275 NF2P35240 595 aa11.53□□□□□ -0.56
SMAD9-203ENST00000399275 STK31Q9BXU1 1019 aa11.53□□□□□ -0.56
SMAD9-203ENST00000399275 NCAPD3P42695 1498 aa11.53□□□□□ -0.56
SMAD9-203ENST00000399275 ENOX2Q16206 610 aaKnown RBP11.53□□□□□ -0.56
SMAD9-203ENST00000399275 SUDS3Q9H7L9 328 aaPredicted RBP11.53□□□□□ -0.56
SMAD9-203ENST00000399275 EHBP1L1Q8N3D4 1523 aa11.52□□□□□ -0.56
SMAD9-203ENST00000399275 REC8O95072 547 aa11.52□□□□□ -0.56
SMAD9-203ENST00000399275 CAVIN1Q6NZI2 390 aaKnown RBP11.52□□□□□ -0.57
SMAD9-203ENST00000399275 ZSCAN30Q86W11 494 aa11.52□□□□□ -0.57
SMAD9-203ENST00000399275 PLEKHH2Q8IVE3 1493 aa11.52□□□□□ -0.57
SMAD9-203ENST00000399275 APBB1O00213 710 aa11.52□□□□□ -0.57
SMAD9-203ENST00000399275 MCM4P33991 863 aa11.52□□□□□ -0.57
SMAD9-203ENST00000399275 GTF2F1P35269 517 aaKnown RBP eCLIP11.52□□□□□ -0.57
SMAD9-203ENST00000399275 CLASRPQ8N2M8 674 aaKnown RBP11.52□□□□□ -0.57
SMAD9-203ENST00000399275 TOMM22Q9NS69 142 aa11.52□□□□□ -0.57
SMAD9-203ENST00000399275 ADAMTS8Q9UP79 889 aa11.52□□□□□ -0.57
SMAD9-203ENST00000399275 TRIM6-TRIM34B2RNG4 842 aa11.51□□□□□ -0.57
SMAD9-203ENST00000399275 TRIM34Q9BYJ4 488 aa11.51□□□□□ -0.57
SMAD9-203ENST00000399275 SASS6Q6UVJ0 657 aa11.51□□□□□ -0.57
SMAD9-203ENST00000399275 RUNDC1Q96C34 613 aa11.51□□□□□ -0.57
SMAD9-203ENST00000399275 GORABQ5T7V8 394 aa11.51□□□□□ -0.57
SMAD9-203ENST00000399275 CCDC91Q7Z6B0 441 aa11.51□□□□□ -0.57
SMAD9-203ENST00000399275 BCL2L13Q9BXK5 485 aa11.51□□□□□ -0.57
SMAD9-203ENST00000399275 CIZ1Q9ULV3 898 aaPredicted RBP11.51□□□□□ -0.57
SMAD9-203ENST00000399275 GOLIM4O00461 696 aa11.51□□□□□ -0.57
SMAD9-203ENST00000399275 NBPF1Q3BBV0 1214 aa11.51□□□□□ -0.57
SMAD9-203ENST00000399275 NBPF8Q3BBV2 869 aa11.51□□□□□ -0.57
SMAD9-203ENST00000399275 RRP7AQ9Y3A4 280 aaKnown RBP11.51□□□□□ -0.57
SMAD9-203ENST00000399275 PDS5BQ9NTI5 1447 aa11.51□□□□□ -0.57
SMAD9-203ENST00000399275 MCTP1Q6DN14 999 aa11.5□□□□□ -0.57
SMAD9-203ENST00000399275 KIAA1328Q86T90 577 aa11.5□□□□□ -0.57
SMAD9-203ENST00000399275 STAC3Q96MF2 364 aa11.5□□□□□ -0.57
SMAD9-203ENST00000399275 PRM3Q9NNZ6 103 aa11.5□□□□□ -0.57
SMAD9-203ENST00000399275 NCOA1Q15788 1441 aa11.5□□□□□ -0.57
SMAD9-203ENST00000399275 ERCC6Q03468 1493 aa11.5□□□□□ -0.57
SMAD9-203ENST00000399275 CCP110O43303 1012 aa11.5□□□□□ -0.57
SMAD9-203ENST00000399275 MYO6Q9UM54 1294 aa11.5□□□□□ -0.57
SMAD9-203ENST00000399275 RNF214Q8ND24 703 aa11.5□□□□□ -0.57
SMAD9-203ENST00000399275 PANK1Q8TE04 598 aa11.49□□□□□ -0.57
SMAD9-203ENST00000399275 ERLIN1O75477 346 aa11.49□□□□□ -0.57
SMAD9-203ENST00000399275 CAGE1Q8TC20 777 aa11.49□□□□□ -0.57
SMAD9-203ENST00000399275 ZNF622Q969S3 477 aaKnown RBP eCLIP11.49□□□□□ -0.57
SMAD9-203ENST00000399275 PPP4R3BQ5MIZ7 849 aa11.49□□□□□ -0.57
SMAD9-203ENST00000399275 NOL8Q76FK4 1167 aaKnown RBP11.49□□□□□ -0.57
SMAD9-203ENST00000399275 RNF20Q5VTR2 975 aa11.49□□□□□ -0.57
SMAD9-203ENST00000399275 PDZRN3Q9UPQ7 1066 aa11.49□□□□□ -0.57
SMAD9-203ENST00000399275 MAPKBP1O60336 1514 aa11.48□□□□□ -0.57
SMAD9-203ENST00000399275 SF3A1Q15459 793 aaKnown RBP11.48□□□□□ -0.57
SMAD9-203ENST00000399275 MBD3O95983 291 aa11.48□□□□□ -0.57
SMAD9-203ENST00000399275 HNRNPMP52272 730 aaKnown RBP eCLIP11.48□□□□□ -0.57
SMAD9-203ENST00000399275 FOXD4L6Q3SYB3 417 aaPredicted RBP11.48□□□□□ -0.57
SMAD9-203ENST00000399275 FOXD4L3Q6VB84 417 aaPredicted RBP11.48□□□□□ -0.57
SMAD9-203ENST00000399275 SMAP1Q8IYB5 467 aaPredicted RBP11.48□□□□□ -0.57
SMAD9-203ENST00000399275 NAIPQ13075 1403 aa11.48□□□□□ -0.57
SMAD9-203ENST00000399275 INTS3Q68E01 1043 aaKnown RBP11.48□□□□□ -0.57
SMAD9-203ENST00000399275 TERF2IPQ9NYB0 399 aa11.48□□□□□ -0.57
SMAD9-203ENST00000399275 CFTRP13569 1480 aa11.48□□□□□ -0.57
SMAD9-203ENST00000399275 SHTN1A0MZ66 631 aa11.47□□□□□ -0.57
SMAD9-203ENST00000399275 RTF1Q92541 710 aaKnown RBP11.47□□□□□ -0.57
SMAD9-203ENST00000399275 BCCIPQ9P287 314 aaKnown RBP eCLIP11.47□□□□□ -0.57
SMAD9-203ENST00000399275 KIAA1107Q9UPP5 1409 aa11.47□□□□□ -0.57
SMAD9-203ENST00000399275 ZBTB12Q9Y330 459 aaPredicted RBP11.47□□□□□ -0.57
SMAD9-203ENST00000399275 CDC45O75419 566 aa11.47□□□□□ -0.57
SMAD9-203ENST00000399275 GBP2P32456 591 aaPredicted RBP11.47□□□□□ -0.57
SMAD9-203ENST00000399275 DYNC1I1O14576 645 aa11.46□□□□□ -0.57
SMAD9-203ENST00000399275 LIG1P18858 919 aa11.46□□□□□ -0.57
SMAD9-203ENST00000399275 PPP2R1AP30153 589 aa11.46□□□□□ -0.57
SMAD9-203ENST00000399275 ROCK1Q13464 1354 aa11.46□□□□□ -0.58
SMAD9-203ENST00000399275 DZIP1Q86YF9 867 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms