RNA–Protein interactions for RNA: ENST00000398743.6

PRAME-202, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PRAME, Length 2,196 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-202ENST00000398743 SLFN5Q08AF3 891 aa18.2■□□□□ 0.5
PRAME-202ENST00000398743 REREQ9P2R6 1566 aa18.19■□□□□ 0.5
PRAME-202ENST00000398743 ANKRD36BQ8N2N9 1353 aa18.19■□□□□ 0.5
PRAME-202ENST00000398743 CRBNQ96SW2 442 aa18.18■□□□□ 0.5
PRAME-202ENST00000398743 TRMT2AQ8IZ69 625 aaKnown RBP18.17■□□□□ 0.5
PRAME-202ENST00000398743 NSD2O96028 1365 aa18.17■□□□□ 0.5
PRAME-202ENST00000398743 MYO5BQ9ULV0 1848 aa18.17■□□□□ 0.5
PRAME-202ENST00000398743 AGLP35573 1532 aa18.17■□□□□ 0.5
PRAME-202ENST00000398743 FBXO31Q5XUX0 539 aaPredicted RBP18.17■□□□□ 0.5
PRAME-202ENST00000398743 TNNT2P45379 298 aaPredicted RBP18.16■□□□□ 0.5
PRAME-202ENST00000398743 PPP6R1Q9UPN7 881 aa18.16■□□□□ 0.5
PRAME-202ENST00000398743 NINLQ9Y2I6 1382 aa18.16■□□□□ 0.5
PRAME-202ENST00000398743 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.15■□□□□ 0.5
PRAME-202ENST00000398743 CABP2Q9NPB3 220 aa18.15■□□□□ 0.5
PRAME-202ENST00000398743 STK26Q9P289 416 aa18.15■□□□□ 0.5
PRAME-202ENST00000398743 NKTRP30414 1462 aaKnown RBP18.15■□□□□ 0.5
PRAME-202ENST00000398743 E9PSI1 815 aa18.15■□□□□ 0.5
PRAME-202ENST00000398743 SAFB2Q14151 953 aaKnown RBP eCLIP18.15■□□□□ 0.5
PRAME-202ENST00000398743 SHPRHQ149N8 1683 aa18.14■□□□□ 0.49
PRAME-202ENST00000398743 PTPRMP28827 1452 aa18.14■□□□□ 0.49
PRAME-202ENST00000398743 TSPOAP1O95153 1857 aa18.14■□□□□ 0.49
PRAME-202ENST00000398743 YTHDC2Q9H6S0 1430 aaKnown RBP18.13■□□□□ 0.49
PRAME-202ENST00000398743 C20orf194Q5TEA3 1177 aa18.13■□□□□ 0.49
PRAME-202ENST00000398743 SPINK5Q9NQ38 1064 aaPredicted RBP18.13■□□□□ 0.49
PRAME-202ENST00000398743 STAG3Q9UJ98 1225 aa18.13■□□□□ 0.49
PRAME-202ENST00000398743 TCERG1O14776 1098 aaKnown RBP18.12■□□□□ 0.49
PRAME-202ENST00000398743 SRPK2P78362 688 aaKnown RBP18.12■□□□□ 0.49
PRAME-202ENST00000398743 CFAP53Q96M91 514 aa18.12■□□□□ 0.49
PRAME-202ENST00000398743 SENP3Q9H4L4 574 aaPredicted RBP18.12■□□□□ 0.49
PRAME-202ENST00000398743 MTHFSP49914 203 aa18.11■□□□□ 0.49
PRAME-202ENST00000398743 ATAD2Q6PL18 1390 aa18.11■□□□□ 0.49
PRAME-202ENST00000398743 ERICH6Q7L0X2 663 aa18.1■□□□□ 0.49
PRAME-202ENST00000398743 PRAM1Q96QH2 718 aa18.1■□□□□ 0.49
PRAME-202ENST00000398743 A0A1W2PP64 1363 aa18.1■□□□□ 0.49
PRAME-202ENST00000398743 ALKQ9UM73 1620 aa18.1■□□□□ 0.49
PRAME-202ENST00000398743 RUNDC1Q96C34 613 aa18.1■□□□□ 0.49
PRAME-202ENST00000398743 POGKQ9P215 609 aa18.1■□□□□ 0.49
PRAME-202ENST00000398743 ABCC11Q96J66 1382 aa18.1■□□□□ 0.49
PRAME-202ENST00000398743 CLTCQ00610 1675 aaKnown RBP18.09■□□□□ 0.49
PRAME-202ENST00000398743 WWC1Q8IX03 1113 aa18.09■□□□□ 0.49
PRAME-202ENST00000398743 SPATA31D1Q6ZQQ2 1576 aa18.09■□□□□ 0.49
PRAME-202ENST00000398743 IQSEC2Q5JU85 1478 aa18.07■□□□□ 0.48
PRAME-202ENST00000398743 MINK1Q8N4C8 1332 aaPredicted RBP18.07■□□□□ 0.48
PRAME-202ENST00000398743 DMRT2Q9Y5R5 561 aa18.07■□□□□ 0.48
PRAME-202ENST00000398743 A2ML1A8K2U0 1454 aa18.06■□□□□ 0.48
PRAME-202ENST00000398743 MS4A1P11836 297 aa18.06■□□□□ 0.48
PRAME-202ENST00000398743 TERF2IPQ9NYB0 399 aa18.06■□□□□ 0.48
PRAME-202ENST00000398743 ANP32AP39687 249 aaKnown RBP18.04■□□□□ 0.48
PRAME-202ENST00000398743 TCP11L2Q8N4U5 519 aa18.04■□□□□ 0.48
PRAME-202ENST00000398743 ARHGEF40Q8TER5 1519 aa18.04■□□□□ 0.48
PRAME-202ENST00000398743 RIMS2Q9UQ26 1411 aa18.03■□□□□ 0.48
PRAME-202ENST00000398743 MLECQ14165 292 aa18.03■□□□□ 0.48
PRAME-202ENST00000398743 NEUROD2Q15784 382 aa18.03■□□□□ 0.48
PRAME-202ENST00000398743 CD163L1Q9NR16 1453 aa18.02■□□□□ 0.48
PRAME-202ENST00000398743 KDM2BQ8NHM5 1336 aa18.02■□□□□ 0.48
PRAME-202ENST00000398743 BCAR3O75815 825 aa18.02■□□□□ 0.48
PRAME-202ENST00000398743 PHF23Q9BUL5 403 aaPredicted RBP18.02■□□□□ 0.48
PRAME-202ENST00000398743 MED14O60244 1454 aa18.02■□□□□ 0.48
PRAME-202ENST00000398743 CCDC27Q2M243 656 aa18.01■□□□□ 0.47
PRAME-202ENST00000398743 CENPQQ7L2Z9 268 aaPredicted RBP18.01■□□□□ 0.47
PRAME-202ENST00000398743 RRP7AQ9Y3A4 280 aaKnown RBP18.01■□□□□ 0.47
PRAME-202ENST00000398743 DLC1Q96QB1 1528 aa18.01■□□□□ 0.47
PRAME-202ENST00000398743 WDR63Q8IWG1 891 aa18.01■□□□□ 0.47
PRAME-202ENST00000398743 CDK19Q9BWU1 502 aa18.01■□□□□ 0.47
PRAME-202ENST00000398743 GGNBP2Q9H3C7 697 aa18.01■□□□□ 0.47
PRAME-202ENST00000398743 U2AF1L5P0DN76 240 aaPredicted RBP18■□□□□ 0.47
PRAME-202ENST00000398743 U2AF1Q01081 240 aaKnown RBP eCLIP18■□□□□ 0.472e-24■□□□□ 8.6
PRAME-202ENST00000398743 NCBP3Q53F19 620 aaKnown RBP18■□□□□ 0.47
PRAME-202ENST00000398743 HDGFL2Q7Z4V5 671 aaPredicted RBP18■□□□□ 0.47
PRAME-202ENST00000398743 PDE4AP27815 886 aa18■□□□□ 0.47
PRAME-202ENST00000398743 FYB1O15117 783 aa17.98■□□□□ 0.47
PRAME-202ENST00000398743 NOP58Q9Y2X3 529 aaKnown RBP17.98■□□□□ 0.47
PRAME-202ENST00000398743 NLRP1Q9C000 1473 aa17.98■□□□□ 0.47
PRAME-202ENST00000398743 BACH2Q9BYV9 841 aa17.98■□□□□ 0.47
PRAME-202ENST00000398743 ESF1Q9H501 851 aaKnown RBP17.98■□□□□ 0.47
PRAME-202ENST00000398743 ANKRD26Q9UPS8 1709 aa17.98■□□□□ 0.47
PRAME-202ENST00000398743 IPO9Q96P70 1041 aaKnown RBP17.97■□□□□ 0.47
PRAME-202ENST00000398743 ADGRB2O60241 1585 aa17.97■□□□□ 0.47
PRAME-202ENST00000398743 SETD1AO15047 1707 aaKnown RBP17.96■□□□□ 0.47
PRAME-202ENST00000398743 PDE3AQ14432 1141 aa17.96■□□□□ 0.47
PRAME-202ENST00000398743 CABP1Q9NZU7 370 aa17.96■□□□□ 0.47
PRAME-202ENST00000398743 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.96■□□□□ 0.46
PRAME-202ENST00000398743 COL3A1P02461 1466 aaPredicted RBP17.95■□□□□ 0.46
PRAME-202ENST00000398743 KIF13AQ9H1H9 1805 aa17.95■□□□□ 0.46
PRAME-202ENST00000398743 CANXP27824 592 aaKnown RBP17.95■□□□□ 0.46
PRAME-202ENST00000398743 ZMYM3Q14202 1370 aa17.95■□□□□ 0.46
PRAME-202ENST00000398743 WAPLQ7Z5K2 1190 aa17.94■□□□□ 0.46
PRAME-202ENST00000398743 ATP7BP35670 1465 aa17.93■□□□□ 0.46
PRAME-202ENST00000398743 U2SURPO15042 1029 aaKnown RBP17.93■□□□□ 0.46
PRAME-202ENST00000398743 MYH16Q9H6N6 1097 aa17.93■□□□□ 0.46
PRAME-202ENST00000398743 SKAP1Q86WV1 359 aa17.93■□□□□ 0.46
PRAME-202ENST00000398743 RARSP54136 660 aaKnown RBP17.92■□□□□ 0.46
PRAME-202ENST00000398743 NRXN3Q9Y4C0 1643 aa17.92■□□□□ 0.46
PRAME-202ENST00000398743 KIF20BQ96Q89 1820 aa17.91■□□□□ 0.46
PRAME-202ENST00000398743 PLEKHF1Q96S99 279 aa17.91■□□□□ 0.46
PRAME-202ENST00000398743 MAPK8IP3Q9UPT6 1336 aa17.9■□□□□ 0.46
PRAME-202ENST00000398743 HDGFP51858 240 aaKnown RBP17.9■□□□□ 0.46
PRAME-202ENST00000398743 PNPLA6Q8IY17 1366 aa17.89■□□□□ 0.46
PRAME-202ENST00000398743 NPM2Q86SE8 214 aaKnown RBP17.89■□□□□ 0.45
PRAME-202ENST00000398743 FRAT1Q92837 279 aaPredicted RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms