RNA–Protein interactions for RNA: ENST00000397760.8

PDLIM2-204, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-204ENST00000397760 FAM135BQ49AJ0 1406 aa26.56■■□□□ 1.84
PDLIM2-204ENST00000397760 PIK3R4Q99570 1358 aa26.55■■□□□ 1.84
PDLIM2-204ENST00000397760 KNDC1Q76NI1 1749 aa26.54■■□□□ 1.84
PDLIM2-204ENST00000397760 CPS1P31327 1500 aa26.54■■□□□ 1.84
PDLIM2-204ENST00000397760 ROBO2Q9HCK4 1378 aa26.53■■□□□ 1.84
PDLIM2-204ENST00000397760 LMTK3Q96Q04 1460 aa26.52■■□□□ 1.84
PDLIM2-204ENST00000397760 ANP32CO43423 234 aa26.51■■□□□ 1.83
PDLIM2-204ENST00000397760 PUS7Q96PZ0 661 aaKnown RBP26.51■■□□□ 1.83
PDLIM2-204ENST00000397760 TULP4Q9NRJ4 1543 aa26.5■■□□□ 1.83
PDLIM2-204ENST00000397760 PANK3Q9H999 370 aa26.48■■□□□ 1.83
PDLIM2-204ENST00000397760 CABP2Q9NPB3 220 aa26.47■■□□□ 1.83
PDLIM2-204ENST00000397760 KCNA6P17658 529 aa26.46■■□□□ 1.83
PDLIM2-204ENST00000397760 SRPK2P78362 688 aaKnown RBP26.46■■□□□ 1.83
PDLIM2-204ENST00000397760 PTCH1Q13635 1447 aa26.46■■□□□ 1.83
PDLIM2-204ENST00000397760 CDK19Q9BWU1 502 aa26.46■■□□□ 1.83
PDLIM2-204ENST00000397760 CCER2I3L3R5 266 aa26.43■■□□□ 1.82
PDLIM2-204ENST00000397760 XRN1Q8IZH2 1706 aaKnown RBP26.42■■□□□ 1.82
PDLIM2-204ENST00000397760 TMC1Q8TDI8 760 aa26.42■■□□□ 1.82
PDLIM2-204ENST00000397760 WASLO00401 505 aaPredicted RBP26.41■■□□□ 1.82
PDLIM2-204ENST00000397760 PER1O15534 1290 aaPredicted RBP26.41■■□□□ 1.82
PDLIM2-204ENST00000397760 SLC12A5Q9H2X9 1139 aa26.39■■□□□ 1.82
PDLIM2-204ENST00000397760 ATAD2Q6PL18 1390 aa26.39■■□□□ 1.82
PDLIM2-204ENST00000397760 MYOM1P52179 1685 aa26.38■■□□□ 1.81
PDLIM2-204ENST00000397760 CHD2O14647 1828 aaKnown RBP26.37■■□□□ 1.81
PDLIM2-204ENST00000397760 PRKRIP1Q9H875 184 aaPredicted RBP26.36■■□□□ 1.81
PDLIM2-204ENST00000397760 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.35■■□□□ 1.81
PDLIM2-204ENST00000397760 CNGB1Q14028 1251 aaPredicted RBP26.35■■□□□ 1.81
PDLIM2-204ENST00000397760 KNSTRNQ9Y448 316 aa26.34■■□□□ 1.81
PDLIM2-204ENST00000397760 NINLQ9Y2I6 1382 aa26.33■■□□□ 1.81
PDLIM2-204ENST00000397760 ADGRB2O60241 1585 aa26.31■■□□□ 1.8
PDLIM2-204ENST00000397760 NUDT16Q96DE0 195 aaKnown RBP26.3■■□□□ 1.8
PDLIM2-204ENST00000397760 CARD14Q9BXL6 1004 aa26.3■■□□□ 1.8
PDLIM2-204ENST00000397760 SUPT16HQ9Y5B9 1047 aaKnown RBP26.3■■□□□ 1.8
PDLIM2-204ENST00000397760 STRCQ7RTU9 1775 aa26.29■■□□□ 1.8
PDLIM2-204ENST00000397760 CABP1Q9NZU7 370 aa26.29■■□□□ 1.8
PDLIM2-204ENST00000397760 NWD1Q149M9 1564 aa26.28■■□□□ 1.8
PDLIM2-204ENST00000397760 RBM33Q96EV2 1170 aaKnown RBP26.28■■□□□ 1.8
PDLIM2-204ENST00000397760 ANKRD36BQ8N2N9 1353 aa26.27■■□□□ 1.8
PDLIM2-204ENST00000397760 KTN1Q86UP2 1357 aaKnown RBP26.26■■□□□ 1.79
PDLIM2-204ENST00000397760 CC2D1BQ5T0F9 858 aaKnown RBP26.25■■□□□ 1.79
PDLIM2-204ENST00000397760 TERF2IPQ9NYB0 399 aa26.25■■□□□ 1.79
PDLIM2-204ENST00000397760 CCDC61Q9Y6R9 512 aa26.25■■□□□ 1.79
PDLIM2-204ENST00000397760 AMER1Q5JTC6 1135 aaPredicted RBP26.25■■□□□ 1.79
PDLIM2-204ENST00000397760 PROSER2Q86WR7 435 aaPredicted RBP26.25■■□□□ 1.79
PDLIM2-204ENST00000397760 PRR36Q9H6K5 1346 aa26.25■■□□□ 1.79
PDLIM2-204ENST00000397760 RALBP1Q15311 655 aa26.24■■□□□ 1.79
PDLIM2-204ENST00000397760 NUTM2FA1L443 756 aa26.23■■□□□ 1.79
PDLIM2-204ENST00000397760 PPIP5K1Q6PFW1 1433 aa26.22■■□□□ 1.79
PDLIM2-204ENST00000397760 NSD3Q9BZ95 1437 aa26.22■■□□□ 1.79
PDLIM2-204ENST00000397760 NKTRP30414 1462 aaKnown RBP26.22■■□□□ 1.79
PDLIM2-204ENST00000397760 HDGFL2Q7Z4V5 671 aaPredicted RBP26.22■■□□□ 1.79
PDLIM2-204ENST00000397760 A0A1W2PP64 1363 aa26.22■■□□□ 1.79
PDLIM2-204ENST00000397760 ATP7BP35670 1465 aa26.22■■□□□ 1.79
PDLIM2-204ENST00000397760 C14orf37Q86TY3 774 aa26.21■■□□□ 1.79
PDLIM2-204ENST00000397760 NPC1L1Q9UHC9 1359 aa26.2■■□□□ 1.78
PDLIM2-204ENST00000397760 CD163L1Q9NR16 1453 aa26.2■■□□□ 1.78
PDLIM2-204ENST00000397760 DMRT2Q9Y5R5 561 aa26.19■■□□□ 1.78
PDLIM2-204ENST00000397760 PARD3Q8TEW0 1356 aa26.19■■□□□ 1.78
PDLIM2-204ENST00000397760 ADGRL3Q9HAR2 1447 aa26.19■■□□□ 1.78
PDLIM2-204ENST00000397760 CGNL1Q0VF96 1302 aa26.15■■□□□ 1.78
PDLIM2-204ENST00000397760 NALCNQ8IZF0 1738 aa26.15■■□□□ 1.78
PDLIM2-204ENST00000397760 MYBBP1AQ9BQG0 1328 aaKnown RBP26.14■■□□□ 1.78
PDLIM2-204ENST00000397760 PLEKHG3A1L390 1219 aa26.14■■□□□ 1.78
PDLIM2-204ENST00000397760 CDC42BPGQ6DT37 1551 aa26.14■■□□□ 1.78
PDLIM2-204ENST00000397760 ANKARQ7Z5J8 1434 aa26.14■■□□□ 1.77
PDLIM2-204ENST00000397760 CPSF1Q10570 1443 aaKnown RBP26.13■■□□□ 1.77
PDLIM2-204ENST00000397760 TMEM94Q12767 1356 aa26.13■■□□□ 1.77
PDLIM2-204ENST00000397760 STRCP1A6NGW2 1772 aa26.13■■□□□ 1.77
PDLIM2-204ENST00000397760 CCDC184Q52MB2 194 aa26.12■■□□□ 1.77
PDLIM2-204ENST00000397760 ZNF335Q9H4Z2 1342 aaPredicted RBP26.12■■□□□ 1.77
PDLIM2-204ENST00000397760 ZNF692Q9BU19 519 aaPredicted RBP26.11■■□□□ 1.77
PDLIM2-204ENST00000397760 C19orf44Q9H6X5 657 aa26.11■■□□□ 1.77
PDLIM2-204ENST00000397760 NCOA3Q9Y6Q9 1424 aa26.1■■□□□ 1.77
PDLIM2-204ENST00000397760 USP32Q8NFA0 1604 aa26.1■■□□□ 1.77
PDLIM2-204ENST00000397760 MRS2Q9HD23 443 aa26.09■■□□□ 1.77
PDLIM2-204ENST00000397760 FMN2Q9NZ56 1722 aa26.09■■□□□ 1.77
PDLIM2-204ENST00000397760 ACEP12821 1306 aa26.09■■□□□ 1.77
PDLIM2-204ENST00000397760 TOPAZ1Q8N9V7 1692 aa26.08■■□□□ 1.77
PDLIM2-204ENST00000397760 PMFBP1Q8TBY8 1022 aa26.08■■□□□ 1.77
PDLIM2-204ENST00000397760 NSD2O96028 1365 aa26.07■■□□□ 1.76
PDLIM2-204ENST00000397760 NLRP13Q86W25 1043 aa26.07■■□□□ 1.76
PDLIM2-204ENST00000397760 MORC1Q86VD1 984 aa26.05■■□□□ 1.76
PDLIM2-204ENST00000397760 EDC4Q6P2E9 1401 aaKnown RBP26.05■■□□□ 1.76
PDLIM2-204ENST00000397760 FYB1O15117 783 aa26.04■■□□□ 1.76
PDLIM2-204ENST00000397760 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.04■■□□□ 1.76
PDLIM2-204ENST00000397760 NGDNQ8NEJ9 315 aaKnown RBP26.04■■□□□ 1.76
PDLIM2-204ENST00000397760 PPP2R1AP30153 589 aa26.03■■□□□ 1.76
PDLIM2-204ENST00000397760 GGNBP2Q9H3C7 697 aa26.03■■□□□ 1.76
PDLIM2-204ENST00000397760 BRD4O60885 1362 aaPredicted RBP26.03■■□□□ 1.76
PDLIM2-204ENST00000397760 ATF3P18847 181 aa26.02■■□□□ 1.76
PDLIM2-204ENST00000397760 ITSN1Q15811 1721 aa26.02■■□□□ 1.76
PDLIM2-204ENST00000397760 POLR3AO14802 1390 aaPredicted RBP26.02■■□□□ 1.76
PDLIM2-204ENST00000397760 LRRC7Q96NW7 1537 aa26.01■■□□□ 1.75
PDLIM2-204ENST00000397760 PHF8Q9UPP1 1060 aa26.01■■□□□ 1.75
PDLIM2-204ENST00000397760 ESCO1Q5FWF5 840 aa26■■□□□ 1.75
PDLIM2-204ENST00000397760 MYT1Q01538 1121 aa26■■□□□ 1.75
PDLIM2-204ENST00000397760 RGPD8O14715 1765 aaPredicted RBP25.99■■□□□ 1.75
PDLIM2-204ENST00000397760 USP6P35125 1406 aa25.99■■□□□ 1.75
PDLIM2-204ENST00000397760 DCCP43146 1447 aa25.99■■□□□ 1.75
PDLIM2-204ENST00000397760 MSH6P52701 1360 aa25.99■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms