RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 DCCP43146 1447 aa13.3□□□□□ -0.28
CAPN3-208ENST00000397204 COL16A1Q07092 1604 aaPredicted RBP13.29□□□□□ -0.28
CAPN3-208ENST00000397204 NUTM2BA6NNL0 878 aaPredicted RBP13.29□□□□□ -0.28
CAPN3-208ENST00000397204 NUTM2EB1AL46 878 aaPredicted RBP13.29□□□□□ -0.28
CAPN3-208ENST00000397204 NUTM2AQ8IVF1 878 aaPredicted RBP13.29□□□□□ -0.28
CAPN3-208ENST00000397204 AHDC1Q5TGY3 1603 aaPredicted RBP13.28□□□□□ -0.28
CAPN3-208ENST00000397204 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.28□□□□□ -0.28
CAPN3-208ENST00000397204 CHADLQ6NUI6 762 aa13.28□□□□□ -0.28
CAPN3-208ENST00000397204 UPF1Q92900 1129 aaKnown RBP eCLIP13.28□□□□□ -0.28
CAPN3-208ENST00000397204 METP08581 1390 aa13.28□□□□□ -0.28
CAPN3-208ENST00000397204 VGFO15240 615 aaPredicted RBP13.27□□□□□ -0.29
CAPN3-208ENST00000397204 PPARGC1BQ86YN6 1023 aaKnown RBP13.27□□□□□ -0.29
CAPN3-208ENST00000397204 LRP6O75581 1613 aa13.27□□□□□ -0.29
CAPN3-208ENST00000397204 TRIM52Q96A61 297 aa13.26□□□□□ -0.29
CAPN3-208ENST00000397204 SETD5Q9C0A6 1442 aa13.26□□□□□ -0.29
CAPN3-208ENST00000397204 SETBP1Q9Y6X0 1596 aa13.24□□□□□ -0.29
CAPN3-208ENST00000397204 MST1RQ04912 1400 aa13.24□□□□□ -0.29
CAPN3-208ENST00000397204 AFF2P51816 1311 aa13.24□□□□□ -0.29
CAPN3-208ENST00000397204 RPGRIP1LQ68CZ1 1315 aa13.23□□□□□ -0.29
CAPN3-208ENST00000397204 QTRT2Q9H974 415 aaKnown RBP13.23□□□□□ -0.29
CAPN3-208ENST00000397204 ADGRL3Q9HAR2 1447 aa13.22□□□□□ -0.29
CAPN3-208ENST00000397204 SHPRHQ149N8 1683 aa13.21□□□□□ -0.29
CAPN3-208ENST00000397204 RBM6P78332 1123 aaKnown RBP13.21□□□□□ -0.29
CAPN3-208ENST00000397204 DDX17Q92841 729 aaKnown RBP13.21□□□□□ -0.29
CAPN3-208ENST00000397204 ASXL1Q8IXJ9 1541 aa13.21□□□□□ -0.29
CAPN3-208ENST00000397204 CDK12Q9NYV4 1490 aaPredicted RBP13.21□□□□□ -0.3
CAPN3-208ENST00000397204 NGLY1Q96IV0 654 aa13.2□□□□□ -0.3
CAPN3-208ENST00000397204 C8orf37Q96NL8 207 aa13.2□□□□□ -0.3
CAPN3-208ENST00000397204 SRCAPQ6ZRS2 3230 aa13.19□□□□□ -0.3
CAPN3-208ENST00000397204 NRXN3Q9Y4C0 1643 aa13.19□□□□□ -0.3
CAPN3-208ENST00000397204 NAIPQ13075 1403 aa13.19□□□□□ -0.3
CAPN3-208ENST00000397204 XRN1Q8IZH2 1706 aaKnown RBP13.19□□□□□ -0.3
CAPN3-208ENST00000397204 PNPLA6Q8IY17 1366 aa13.19□□□□□ -0.3
CAPN3-208ENST00000397204 ORAI2Q96SN7 254 aa13.18□□□□□ -0.3
CAPN3-208ENST00000397204 C1orf167Q5SNV9 1468 aa13.17□□□□□ -0.3
CAPN3-208ENST00000397204 SOS2Q07890 1332 aaPredicted RBP13.17□□□□□ -0.3
CAPN3-208ENST00000397204 SPHKAPQ2M3C7 1700 aa13.17□□□□□ -0.3
CAPN3-208ENST00000397204 RRBP1Q9P2E9 1410 aaKnown RBP13.17□□□□□ -0.3
CAPN3-208ENST00000397204 ADAMTS2O95450 1211 aa13.17□□□□□ -0.3
CAPN3-208ENST00000397204 CREBZFQ9NS37 354 aa13.17□□□□□ -0.3
CAPN3-208ENST00000397204 ROBO2Q9HCK4 1378 aa13.17□□□□□ -0.3
CAPN3-208ENST00000397204 NEXMIFQ5QGS0 1516 aa13.16□□□□□ -0.3
CAPN3-208ENST00000397204 PTCH1Q13635 1447 aa13.15□□□□□ -0.3
CAPN3-208ENST00000397204 SETD1AO15047 1707 aaKnown RBP13.14□□□□□ -0.31
CAPN3-208ENST00000397204 FNBP4Q8N3X1 1017 aaPredicted RBP13.14□□□□□ -0.31
CAPN3-208ENST00000397204 HFM1A2PYH4 1435 aa13.13□□□□□ -0.31
CAPN3-208ENST00000397204 CLTCL1P53675 1640 aa13.13□□□□□ -0.31
CAPN3-208ENST00000397204 NHSL1Q5SYE7 1610 aa13.13□□□□□ -0.31
CAPN3-208ENST00000397204 USP21Q9UK80 565 aa13.13□□□□□ -0.31
CAPN3-208ENST00000397204 PRAG1Q86YV5 1406 aa13.13□□□□□ -0.31
CAPN3-208ENST00000397204 ESCO1Q5FWF5 840 aa13.12□□□□□ -0.31
CAPN3-208ENST00000397204 TRPC5Q9UL62 973 aaPredicted RBP13.12□□□□□ -0.31
CAPN3-208ENST00000397204 NPHP3Q7Z494 1330 aa13.12□□□□□ -0.31
CAPN3-208ENST00000397204 FARP1Q9Y4F1 1045 aaPredicted RBP13.1□□□□□ -0.31
CAPN3-208ENST00000397204 KIF1BO60333 1816 aa13.09□□□□□ -0.31
CAPN3-208ENST00000397204 HAX1O00165 279 aa13.09□□□□□ -0.31
CAPN3-208ENST00000397204 RGS12O14924 1447 aa13.09□□□□□ -0.31
CAPN3-208ENST00000397204 FOXO3O43524 673 aa13.09□□□□□ -0.31
CAPN3-208ENST00000397204 RGL3Q3MIN7 710 aa13.09□□□□□ -0.31
CAPN3-208ENST00000397204 ADGRF5Q8IZF2 1346 aa13.09□□□□□ -0.31
CAPN3-208ENST00000397204 STK26Q9P289 416 aa13.08□□□□□ -0.32
CAPN3-208ENST00000397204 NALCNQ8IZF0 1738 aa13.08□□□□□ -0.32
CAPN3-208ENST00000397204 LRPPRCP42704 1394 aaKnown RBP13.07□□□□□ -0.32
CAPN3-208ENST00000397204 LAMC1P11047 1609 aa13.07□□□□□ -0.32
CAPN3-208ENST00000397204 WAPLQ7Z5K2 1190 aa13.07□□□□□ -0.32
CAPN3-208ENST00000397204 CCDC125Q86Z20 511 aa13.07□□□□□ -0.32
CAPN3-208ENST00000397204 SIRT1Q96EB6 747 aa13.07□□□□□ -0.32
CAPN3-208ENST00000397204 ATAD2Q6PL18 1390 aa13.07□□□□□ -0.32
CAPN3-208ENST00000397204 ABCC11Q96J66 1382 aa13.07□□□□□ -0.32
CAPN3-208ENST00000397204 ANKRD30BQ9BXX2 1392 aa13.07□□□□□ -0.32
CAPN3-208ENST00000397204 MPHOSPH9Q99550 1183 aa13.06□□□□□ -0.32
CAPN3-208ENST00000397204 TMEM132EQ6IEE7 984 aa13.05□□□□□ -0.32
CAPN3-208ENST00000397204 ACIN1Q9UKV3 1341 aaKnown RBP13.05□□□□□ -0.32
CAPN3-208ENST00000397204 CCDC144AA2RUR9 1427 aa13.05□□□□□ -0.32
CAPN3-208ENST00000397204 MIER1Q8N108 512 aa13.04□□□□□ -0.32
CAPN3-208ENST00000397204 GJD4Q96KN9 370 aaPredicted RBP13.04□□□□□ -0.32
CAPN3-208ENST00000397204 FBXO3Q9UK99 471 aa13.04□□□□□ -0.32
CAPN3-208ENST00000397204 ATRNO75882 1429 aa13.04□□□□□ -0.32
CAPN3-208ENST00000397204 EP400Q96L91 3159 aa13.03□□□□□ -0.32
CAPN3-208ENST00000397204 NUTM2FA1L443 756 aa13.03□□□□□ -0.32
CAPN3-208ENST00000397204 XPCQ01831 940 aaPredicted RBP13.03□□□□□ -0.32
CAPN3-208ENST00000397204 TECPR2O15040 1411 aa13.03□□□□□ -0.32
CAPN3-208ENST00000397204 KRT28Q7Z3Y7 464 aa13.02□□□□□ -0.33
CAPN3-208ENST00000397204 C14orf93Q9H972 538 aaKnown RBP13.02□□□□□ -0.33
CAPN3-208ENST00000397204 ZRANB1Q9UGI0 708 aa13.02□□□□□ -0.33
CAPN3-208ENST00000397204 SPATA31A3Q5VYP0 1347 aa13.02□□□□□ -0.33
CAPN3-208ENST00000397204 SPATA31E1Q6ZUB1 1445 aa13.02□□□□□ -0.33
CAPN3-208ENST00000397204 MYOM2P54296 1465 aa13.02□□□□□ -0.33
CAPN3-208ENST00000397204 BCL9LQ86UU0 1499 aa13.02□□□□□ -0.33
CAPN3-208ENST00000397204 PSME1Q06323 249 aa13.01□□□□□ -0.33
CAPN3-208ENST00000397204 UNC5CLQ8IV45 518 aa13.01□□□□□ -0.33
CAPN3-208ENST00000397204 PXDNQ92626 1479 aa13.01□□□□□ -0.33
CAPN3-208ENST00000397204 CDC42BPGQ6DT37 1551 aa13□□□□□ -0.33
CAPN3-208ENST00000397204 MNX1P50219 401 aaPredicted RBP12.99□□□□□ -0.33
CAPN3-208ENST00000397204 PLCD3Q8N3E9 789 aa12.99□□□□□ -0.33
CAPN3-208ENST00000397204 PHF8Q9UPP1 1060 aa12.99□□□□□ -0.33
CAPN3-208ENST00000397204 PPLO60437 1756 aa12.99□□□□□ -0.33
CAPN3-208ENST00000397204 COL22A1Q8NFW1 1626 aaPredicted RBP12.99□□□□□ -0.33
CAPN3-208ENST00000397204 YTHDC2Q9H6S0 1430 aaKnown RBP12.98□□□□□ -0.33
CAPN3-208ENST00000397204 PLEKHH1Q9ULM0 1364 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms