RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ATAD2BQ9ULI0 1458 aa12.38□□□□□ -0.43
LIMCH1-203ENST00000396595 PLCD4Q9BRC7 762 aa12.38□□□□□ -0.43
LIMCH1-203ENST00000396595 WASHC2AQ641Q2 1341 aa12.38□□□□□ -0.43
LIMCH1-203ENST00000396595 MNS1Q8NEH6 495 aa12.37□□□□□ -0.43
LIMCH1-203ENST00000396595 PRM3Q9NNZ6 103 aa12.37□□□□□ -0.43
LIMCH1-203ENST00000396595 PTPRGP23470 1445 aa12.37□□□□□ -0.43
LIMCH1-203ENST00000396595 PCMTD1Q96MG8 357 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-203ENST00000396595 ACBD3Q9H3P7 528 aa12.37□□□□□ -0.43
LIMCH1-203ENST00000396595 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.36□□□□□ -0.43
LIMCH1-203ENST00000396595 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.36□□□□□ -0.43
LIMCH1-203ENST00000396595 AK7Q96M32 723 aa12.36□□□□□ -0.43
LIMCH1-203ENST00000396595 R3HCC1Q9Y3T6 440 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-203ENST00000396595 AMOTL1Q8IY63 956 aa12.35□□□□□ -0.43
LIMCH1-203ENST00000396595 ADAMTS8Q9UP79 889 aa12.35□□□□□ -0.43
LIMCH1-203ENST00000396595 LETM1O95202 739 aaPredicted RBP12.35□□□□□ -0.43
LIMCH1-203ENST00000396595 MCM2P49736 904 aa12.35□□□□□ -0.43
LIMCH1-203ENST00000396595 TSPYL4Q9UJ04 414 aa12.35□□□□□ -0.43
LIMCH1-203ENST00000396595 SAFBQ15424 915 aaKnown RBP eCLIP12.35□□□□□ -0.43
LIMCH1-203ENST00000396595 NAT10Q9H0A0 1025 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-203ENST00000396595 PDE3AQ14432 1141 aa12.34□□□□□ -0.43
LIMCH1-203ENST00000396595 NECTIN2Q92692 538 aa12.34□□□□□ -0.43
LIMCH1-203ENST00000396595 SMARCA4P51532 1647 aa12.34□□□□□ -0.43
LIMCH1-203ENST00000396595 RRP9O43818 475 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-203ENST00000396595 CDR1P51861 262 aa12.34□□□□□ -0.43
LIMCH1-203ENST00000396595 UBE2Q2Q8WVN8 375 aa12.34□□□□□ -0.43
LIMCH1-203ENST00000396595 NINLQ9Y2I6 1382 aa12.33□□□□□ -0.43
LIMCH1-203ENST00000396595 NOL10Q9BSC4 688 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-203ENST00000396595 LRRC9Q6ZRR7 1453 aa12.33□□□□□ -0.44
LIMCH1-203ENST00000396595 RABEP1Q15276 862 aa12.33□□□□□ -0.44
LIMCH1-203ENST00000396595 PSMA5P28066 241 aa12.33□□□□□ -0.44
LIMCH1-203ENST00000396595 NFXL1Q6ZNB6 911 aa12.33□□□□□ -0.44
LIMCH1-203ENST00000396595 HSP90B2PQ58FF3 399 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 AEBP1Q8IUX7 1158 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 ANKRD50Q9ULJ7 1429 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 ERICH2A1L162 156 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 CCDC173Q0VFZ6 552 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 DCTN1Q14203 1278 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 RNF214Q8ND24 703 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 PDZRN3Q9UPQ7 1066 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 IGF1RP08069 1367 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 HMGN5P82970 282 aaKnown RBP12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 CAVIN1Q6NZI2 390 aaKnown RBP12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 RALYLQ86SE5 291 aaKnown RBP12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 TCP11L2Q8N4U5 519 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 CDCA7LQ96GN5 454 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 DEF6Q9H4E7 631 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 KIF21BO75037 1637 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 UBTFL1P0CB47 393 aaPredicted RBP12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 MAPK8IP2Q13387 824 aaPredicted RBP12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 RUFY1Q96T51 708 aa12.32□□□□□ -0.44
LIMCH1-203ENST00000396595 FANCD2Q9BXW9 1451 aa12.31□□□□□ -0.44
LIMCH1-203ENST00000396595 GNAI3P08754 354 aa12.31□□□□□ -0.44
LIMCH1-203ENST00000396595 SDF4Q9BRK5 362 aa12.31□□□□□ -0.44
LIMCH1-203ENST00000396595 PDCP20941 246 aa12.31□□□□□ -0.44
LIMCH1-203ENST00000396595 LEKR1Q6ZMV7 388 aa12.31□□□□□ -0.44
LIMCH1-203ENST00000396595 CNTROBQ8N137 903 aa12.31□□□□□ -0.44
LIMCH1-203ENST00000396595 OLFM4Q6UX06 510 aa12.3□□□□□ -0.44
LIMCH1-203ENST00000396595 HMOX1P09601 288 aa12.3□□□□□ -0.44
LIMCH1-203ENST00000396595 GCC1Q96CN9 775 aa12.3□□□□□ -0.44
LIMCH1-203ENST00000396595 BACH2Q9BYV9 841 aa12.3□□□□□ -0.44
LIMCH1-203ENST00000396595 TSPY26PQ9H489 355 aa12.3□□□□□ -0.44
LIMCH1-203ENST00000396595 DYDC1Q8WWB3 177 aa12.3□□□□□ -0.44
LIMCH1-203ENST00000396595 FYCO1Q9BQS8 1478 aa12.3□□□□□ -0.44
LIMCH1-203ENST00000396595 PPP2R1AP30153 589 aa12.3□□□□□ -0.44
LIMCH1-203ENST00000396595 MTHFSP49914 203 aa12.3□□□□□ -0.44
LIMCH1-203ENST00000396595 GGNBP2Q9H3C7 697 aa12.3□□□□□ -0.44
LIMCH1-203ENST00000396595 BRPF3Q9ULD4 1205 aa12.3□□□□□ -0.44
LIMCH1-203ENST00000396595 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-203ENST00000396595 USP8P40818 1118 aa12.29□□□□□ -0.44
LIMCH1-203ENST00000396595 NEK4P51957 841 aa12.29□□□□□ -0.44
LIMCH1-203ENST00000396595 CLASRPQ8N2M8 674 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-203ENST00000396595 TRIM5Q9C035 493 aa12.29□□□□□ -0.44
LIMCH1-203ENST00000396595 FBXW7Q969H0 707 aa12.29□□□□□ -0.44
LIMCH1-203ENST00000396595 ZNF644Q9H582 1327 aaPredicted RBP12.28□□□□□ -0.44
LIMCH1-203ENST00000396595 SCAPERQ9BY12 1400 aa12.28□□□□□ -0.44
LIMCH1-203ENST00000396595 CWC22Q9HCG8 908 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-203ENST00000396595 PRPF40AO75400 957 aaKnown RBP12.27□□□□□ -0.44
LIMCH1-203ENST00000396595 FOSBP53539 338 aa12.27□□□□□ -0.44
LIMCH1-203ENST00000396595 TSPYL1Q9H0U9 437 aa12.27□□□□□ -0.44
LIMCH1-203ENST00000396595 KINO60870 393 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-203ENST00000396595 ERCC4Q92889 916 aaPredicted RBP12.27□□□□□ -0.45
LIMCH1-203ENST00000396595 CASKIN1Q8WXD9 1431 aa12.27□□□□□ -0.45
LIMCH1-203ENST00000396595 CCP110O43303 1012 aa12.27□□□□□ -0.45
LIMCH1-203ENST00000396595 NCOA2Q15596 1464 aa12.27□□□□□ -0.45
LIMCH1-203ENST00000396595 RRBP1Q9P2E9 1410 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-203ENST00000396595 HIP1O00291 1037 aa12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 DHX16O60231 1041 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 EVA1CP58658 441 aa12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 RBM10P98175 930 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 VPS37DQ86XT2 251 aa12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 EXOSC9Q06265 439 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 RIC3Q7Z5B4 369 aa12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 GIMAP7Q8NHV1 300 aa12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 FSD1Q9BTV5 496 aa12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 TCEAL9Q9UHQ7 104 aa12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 CT47B1P0C2W7 299 aaPredicted RBP12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 BRMS1Q9HCU9 246 aa12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 GAPVD1Q14C86 1478 aa12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 SMG6Q86US8 1419 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-203ENST00000396595 NEUROD6Q96NK8 337 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms