RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 PPP6R1Q9UPN7 881 aa18.5■□□□□ 0.55
SNCA-204ENST00000394989 ARHGEF40Q8TER5 1519 aa18.5■□□□□ 0.55
SNCA-204ENST00000394989 SAFB2Q14151 953 aaKnown RBP eCLIP18.49■□□□□ 0.55
SNCA-204ENST00000394989 STK26Q9P289 416 aa18.49■□□□□ 0.55
SNCA-204ENST00000394989 CCDC146Q8IYE0 955 aa18.48■□□□□ 0.55
SNCA-204ENST00000394989 ALKQ9UM73 1620 aa18.48■□□□□ 0.55
SNCA-204ENST00000394989 CABP2Q9NPB3 220 aa18.48■□□□□ 0.55
SNCA-204ENST00000394989 SHPRHQ149N8 1683 aa18.48■□□□□ 0.55
SNCA-204ENST00000394989 POLR3AO14802 1390 aaPredicted RBP18.47■□□□□ 0.55
SNCA-204ENST00000394989 CCDC136Q96JN2 1154 aa18.47■□□□□ 0.55
SNCA-204ENST00000394989 NBR1Q14596 966 aa18.47■□□□□ 0.55
SNCA-204ENST00000394989 YTHDC2Q9H6S0 1430 aaKnown RBP18.47■□□□□ 0.55
SNCA-204ENST00000394989 ANKRD36BQ8N2N9 1353 aa18.47■□□□□ 0.55
SNCA-204ENST00000394989 A2ML1A8K2U0 1454 aa18.46■□□□□ 0.55
SNCA-204ENST00000394989 MLECQ14165 292 aa18.46■□□□□ 0.55
SNCA-204ENST00000394989 EXOC6Q8TAG9 804 aa18.46■□□□□ 0.55
SNCA-204ENST00000394989 DUSP27Q5VZP5 1158 aa18.46■□□□□ 0.55
SNCA-204ENST00000394989 MORC1Q86VD1 984 aa18.45■□□□□ 0.54
SNCA-204ENST00000394989 TNNT2P45379 298 aaPredicted RBP18.44■□□□□ 0.54
SNCA-204ENST00000394989 PRAM1Q96QH2 718 aa18.44■□□□□ 0.54
SNCA-204ENST00000394989 APAF1O14727 1248 aa18.43■□□□□ 0.54
SNCA-204ENST00000394989 PLIN1O60240 522 aa18.43■□□□□ 0.54
SNCA-204ENST00000394989 CGNL1Q0VF96 1302 aa18.43■□□□□ 0.54
SNCA-204ENST00000394989 STAG3Q9UJ98 1225 aa18.42■□□□□ 0.54
SNCA-204ENST00000394989 SETD1AO15047 1707 aaKnown RBP18.42■□□□□ 0.54
SNCA-204ENST00000394989 GOLGA2Q08379 1002 aa18.42■□□□□ 0.54
SNCA-204ENST00000394989 A0A1W2PP64 1363 aa18.41■□□□□ 0.54
SNCA-204ENST00000394989 SPINK5Q9NQ38 1064 aaPredicted RBP18.4■□□□□ 0.54
SNCA-204ENST00000394989 MINK1Q8N4C8 1332 aaPredicted RBP18.4■□□□□ 0.54
SNCA-204ENST00000394989 PRKCSHP14314 528 aaPredicted RBP18.4■□□□□ 0.54
SNCA-204ENST00000394989 SLFN5Q08AF3 891 aa18.4■□□□□ 0.54
SNCA-204ENST00000394989 TRMT2AQ8IZ69 625 aaKnown RBP18.4■□□□□ 0.54
SNCA-204ENST00000394989 DEKP35659 375 aaKnown RBP18.39■□□□□ 0.53
SNCA-204ENST00000394989 SRPK2P78362 688 aaKnown RBP18.39■□□□□ 0.53
SNCA-204ENST00000394989 CD163L1Q9NR16 1453 aa18.39■□□□□ 0.53
SNCA-204ENST00000394989 RIMS2Q9UQ26 1411 aa18.39■□□□□ 0.53
SNCA-204ENST00000394989 NINLQ9Y2I6 1382 aa18.38■□□□□ 0.53
SNCA-204ENST00000394989 NSD2O96028 1365 aa18.38■□□□□ 0.53
SNCA-204ENST00000394989 ABCC11Q96J66 1382 aa18.38■□□□□ 0.53
SNCA-204ENST00000394989 ZMYM3Q14202 1370 aa18.37■□□□□ 0.53
SNCA-204ENST00000394989 NRXN3Q9Y4C0 1643 aa18.37■□□□□ 0.53
SNCA-204ENST00000394989 MTHFSP49914 203 aa18.37■□□□□ 0.53
SNCA-204ENST00000394989 DMRT2Q9Y5R5 561 aa18.37■□□□□ 0.53
SNCA-204ENST00000394989 POGKQ9P215 609 aa18.37■□□□□ 0.53
SNCA-204ENST00000394989 ATAD2Q6PL18 1390 aa18.35■□□□□ 0.53
SNCA-204ENST00000394989 C20orf194Q5TEA3 1177 aa18.35■□□□□ 0.53
SNCA-204ENST00000394989 DLC1Q96QB1 1528 aa18.34■□□□□ 0.53
SNCA-204ENST00000394989 IQSEC2Q5JU85 1478 aa18.34■□□□□ 0.53
SNCA-204ENST00000394989 NLRP1Q9C000 1473 aa18.34■□□□□ 0.53
SNCA-204ENST00000394989 CRBNQ96SW2 442 aa18.33■□□□□ 0.53
SNCA-204ENST00000394989 CDK19Q9BWU1 502 aa18.32■□□□□ 0.52
SNCA-204ENST00000394989 WAPLQ7Z5K2 1190 aa18.32■□□□□ 0.52
SNCA-204ENST00000394989 NKTRP30414 1462 aaKnown RBP18.32■□□□□ 0.52
SNCA-204ENST00000394989 ANKRD26Q9UPS8 1709 aa18.31■□□□□ 0.52
SNCA-204ENST00000394989 FANCIQ9NVI1 1328 aa18.31■□□□□ 0.52
SNCA-204ENST00000394989 WWC1Q8IX03 1113 aa18.31■□□□□ 0.52
SNCA-204ENST00000394989 NGEFQ8N5V2 710 aa18.31■□□□□ 0.52
SNCA-204ENST00000394989 GGNBP2Q9H3C7 697 aa18.3■□□□□ 0.52
SNCA-204ENST00000394989 E9PSI1 815 aa18.3■□□□□ 0.52
SNCA-204ENST00000394989 FYB1O15117 783 aa18.3■□□□□ 0.52
SNCA-204ENST00000394989 RUNDC1Q96C34 613 aa18.29■□□□□ 0.52
SNCA-204ENST00000394989 ANO8Q9HCE9 1232 aaPredicted RBP18.29■□□□□ 0.52
SNCA-204ENST00000394989 METP08581 1390 aa18.29■□□□□ 0.52
SNCA-204ENST00000394989 TERF2IPQ9NYB0 399 aa18.29■□□□□ 0.52
SNCA-204ENST00000394989 ESF1Q9H501 851 aaKnown RBP18.28■□□□□ 0.52
SNCA-204ENST00000394989 MED14O60244 1454 aa18.28■□□□□ 0.52
SNCA-204ENST00000394989 CABP1Q9NZU7 370 aa18.28■□□□□ 0.52
SNCA-204ENST00000394989 CFAP53Q96M91 514 aa18.28■□□□□ 0.52
SNCA-204ENST00000394989 PHF23Q9BUL5 403 aaPredicted RBP18.28■□□□□ 0.52
SNCA-204ENST00000394989 TCP11L2Q8N4U5 519 aa18.27■□□□□ 0.52
SNCA-204ENST00000394989 RRP7AQ9Y3A4 280 aaKnown RBP18.27■□□□□ 0.52
SNCA-204ENST00000394989 COL3A1P02461 1466 aaPredicted RBP18.27■□□□□ 0.52
SNCA-204ENST00000394989 UBR1Q8IWV7 1749 aa18.26■□□□□ 0.51
SNCA-204ENST00000394989 TNRQ92752 1358 aa18.26■□□□□ 0.51
SNCA-204ENST00000394989 NEUROD2Q15784 382 aa18.26■□□□□ 0.51
SNCA-204ENST00000394989 RTN4Q9NQC3 1192 aaKnown RBP18.25■□□□□ 0.51
SNCA-204ENST00000394989 KIF20BQ96Q89 1820 aa18.25■□□□□ 0.51
SNCA-204ENST00000394989 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.24■□□□□ 0.51
SNCA-204ENST00000394989 BCAR3O75815 825 aa18.24■□□□□ 0.51
SNCA-204ENST00000394989 ADGRB2O60241 1585 aa18.24■□□□□ 0.51
SNCA-204ENST00000394989 KNDC1Q76NI1 1749 aa18.23■□□□□ 0.51
SNCA-204ENST00000394989 HDGFL2Q7Z4V5 671 aaPredicted RBP18.23■□□□□ 0.51
SNCA-204ENST00000394989 ATP7BP35670 1465 aa18.22■□□□□ 0.51
SNCA-204ENST00000394989 U2AF1L5P0DN76 240 aaPredicted RBP18.22■□□□□ 0.51
SNCA-204ENST00000394989 U2AF1Q01081 240 aaKnown RBP eCLIP18.22■□□□□ 0.51
SNCA-204ENST00000394989 TMEM2Q9UHN6 1383 aa18.22■□□□□ 0.51
SNCA-204ENST00000394989 TXNDC2Q86VQ3 553 aa18.21■□□□□ 0.51
SNCA-204ENST00000394989 TECPR2O15040 1411 aa18.21■□□□□ 0.51
SNCA-204ENST00000394989 PAK3O75914 559 aaPredicted RBP18.2■□□□□ 0.5
SNCA-204ENST00000394989 CCDC27Q2M243 656 aa18.2■□□□□ 0.5
SNCA-204ENST00000394989 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.2■□□□□ 0.5
SNCA-204ENST00000394989 CPS1P31327 1500 aa18.19■□□□□ 0.5
SNCA-204ENST00000394989 WASLO00401 505 aaPredicted RBP18.19■□□□□ 0.5
SNCA-204ENST00000394989 PLEKHF1Q96S99 279 aa18.19■□□□□ 0.5
SNCA-204ENST00000394989 PNPLA6Q8IY17 1366 aa18.19■□□□□ 0.5
SNCA-204ENST00000394989 KDM2BQ8NHM5 1336 aa18.18■□□□□ 0.5
SNCA-204ENST00000394989 CPSF1Q10570 1443 aaKnown RBP18.18■□□□□ 0.5
SNCA-204ENST00000394989 FAM135BQ49AJ0 1406 aa18.18■□□□□ 0.5
SNCA-204ENST00000394989 WDR63Q8IWG1 891 aa18.18■□□□□ 0.5
SNCA-204ENST00000394989 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms