RNA–Protein interactions for RNA: ENST00000394768.6

SYNE2-205, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 11,095 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-205ENST00000394768 INCENPQ9NQS7 918 aa8.93□□□□□ -0.98
SYNE2-205ENST00000394768 IPO9Q96P70 1041 aaKnown RBP8.93□□□□□ -0.98
SYNE2-205ENST00000394768 HSP90AA2PQ14568 343 aaPredicted RBP8.93□□□□□ -0.98
SYNE2-205ENST00000394768 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.93□□□□□ -0.98
SYNE2-205ENST00000394768 NUCB2P80303 420 aa8.93□□□□□ -0.98
SYNE2-205ENST00000394768 KIF6Q6ZMV9 814 aa8.93□□□□□ -0.98
SYNE2-205ENST00000394768 STIM1Q13586 685 aa8.93□□□□□ -0.98
SYNE2-205ENST00000394768 JMYQ8N9B5 988 aa8.93□□□□□ -0.98
SYNE2-205ENST00000394768 HSPA5P11021 654 aaKnown RBP8.92□□□□□ -0.98
SYNE2-205ENST00000394768 SOGA1O94964 1423 aa8.92□□□□□ -0.98
SYNE2-205ENST00000394768 FILIP1LQ4L180 1135 aa8.92□□□□□ -0.98
SYNE2-205ENST00000394768 MPHOSPH9Q99550 1183 aa8.92□□□□□ -0.98
SYNE2-205ENST00000394768 GBP2P32456 591 aaPredicted RBP8.92□□□□□ -0.98
SYNE2-205ENST00000394768 ZNF771Q7L3S4 317 aaPredicted RBP8.92□□□□□ -0.98
SYNE2-205ENST00000394768 KLHL34Q8N239 644 aa8.92□□□□□ -0.98
SYNE2-205ENST00000394768 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.92□□□□□ -0.98
SYNE2-205ENST00000394768 ZNHIT6Q9NWK9 470 aaKnown RBP8.92□□□□□ -0.98
SYNE2-205ENST00000394768 ANKRD45Q5TZF3 282 aa8.92□□□□□ -0.98
SYNE2-205ENST00000394768 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.91□□□□□ -0.98
SYNE2-205ENST00000394768 H0YHG0 523 aa8.91□□□□□ -0.98
SYNE2-205ENST00000394768 GPRASP1Q5JY77 1395 aa8.91□□□□□ -0.98
SYNE2-205ENST00000394768 CUX1P39880 1505 aa8.91□□□□□ -0.98
SYNE2-205ENST00000394768 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.91□□□□□ -0.98
SYNE2-205ENST00000394768 SMC3Q9UQE7 1217 aa8.91□□□□□ -0.98
SYNE2-205ENST00000394768 SIN3AQ96ST3 1273 aa8.91□□□□□ -0.98
SYNE2-205ENST00000394768 PDIA4P13667 645 aaKnown RBP8.91□□□□□ -0.98
SYNE2-205ENST00000394768 FAM161AQ3B820 660 aa8.91□□□□□ -0.98
SYNE2-205ENST00000394768 DACH1Q9UI36 760 aa8.9□□□□□ -0.98
SYNE2-205ENST00000394768 KRT18P05783 430 aaKnown RBP8.9□□□□□ -0.99
SYNE2-205ENST00000394768 ZNF592Q92610 1267 aa8.9□□□□□ -0.99
SYNE2-205ENST00000394768 ERC1Q8IUD2 1116 aa8.9□□□□□ -0.99
SYNE2-205ENST00000394768 CCDC112Q8NEF3 446 aa8.89□□□□□ -0.99
SYNE2-205ENST00000394768 POTEJP0CG39 1038 aa8.89□□□□□ -0.99
SYNE2-205ENST00000394768 NEBLO76041 1014 aa8.89□□□□□ -0.99
SYNE2-205ENST00000394768 MCM2P49736 904 aa8.89□□□□□ -0.99
SYNE2-205ENST00000394768 CCDC27Q2M243 656 aa8.89□□□□□ -0.99
SYNE2-205ENST00000394768 GNAI1P63096 354 aa8.89□□□□□ -0.99
SYNE2-205ENST00000394768 SENP3-EIF4A1A0A087X0R7 540 aa8.89□□□□□ -0.99
SYNE2-205ENST00000394768 NEFHP12036 1026 aa8.88□□□□□ -0.99
SYNE2-205ENST00000394768 RRBP1Q9P2E9 1410 aaKnown RBP8.88□□□□□ -0.99
SYNE2-205ENST00000394768 CNTROBQ8N137 903 aa8.88□□□□□ -0.99
SYNE2-205ENST00000394768 NACAP1Q9BZK3 213 aa8.88□□□□□ -0.99
SYNE2-205ENST00000394768 KINO60870 393 aaKnown RBP8.88□□□□□ -0.99
SYNE2-205ENST00000394768 FKBP5Q13451 457 aaPredicted RBP8.88□□□□□ -0.99
SYNE2-205ENST00000394768 ZNF287Q9HBT7 754 aa8.88□□□□□ -0.99
SYNE2-205ENST00000394768 ZNF396Q96N95 335 aaPredicted RBP8.88□□□□□ -0.99
SYNE2-205ENST00000394768 ARID3AQ99856 593 aa8.88□□□□□ -0.99
SYNE2-205ENST00000394768 PDCL3Q9H2J4 239 aa8.87□□□□□ -0.99
SYNE2-205ENST00000394768 DEF6Q9H4E7 631 aa8.87□□□□□ -0.99
SYNE2-205ENST00000394768 ZSCAN25Q6NSZ9 544 aa8.87□□□□□ -0.99
SYNE2-205ENST00000394768 PPP1R12BO60237 982 aaPredicted RBP8.87□□□□□ -0.99
SYNE2-205ENST00000394768 CETN2P41208 172 aa8.87□□□□□ -0.99
SYNE2-205ENST00000394768 DIAPH1O60610 1272 aaKnown RBP8.87□□□□□ -0.99
SYNE2-205ENST00000394768 RIC3Q7Z5B4 369 aa8.87□□□□□ -0.99
SYNE2-205ENST00000394768 DHX57Q6P158 1386 aaKnown RBP8.87□□□□□ -0.99
SYNE2-205ENST00000394768 TRIM22Q8IYM9 498 aa8.87□□□□□ -0.99
SYNE2-205ENST00000394768 CCDC97Q96F63 343 aaPredicted RBP8.87□□□□□ -0.99
SYNE2-205ENST00000394768 CCDC7Q96M83 1385 aa8.87□□□□□ -0.99
SYNE2-205ENST00000394768 CLUAP1Q96AJ1 413 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 CCDC66A2RUB6 948 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 CAVIN1Q6NZI2 390 aaKnown RBP8.86□□□□□ -0.99
SYNE2-205ENST00000394768 WASHC4Q2M389 1173 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 IFT57Q9NWB7 429 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 RAPGEF2Q9Y4G8 1499 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 BMP2KQ9NSY1 1161 aaPredicted RBP8.86□□□□□ -0.99
SYNE2-205ENST00000394768 CDKL5O76039 1030 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 EIF2S2P20042 333 aaKnown RBP8.86□□□□□ -0.99
SYNE2-205ENST00000394768 TNIP1Q15025 636 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 GRIPAP1Q4V328 841 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 ANKRD1Q15327 319 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 STAMBPO95630 424 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 PPP4R3AQ6IN85 833 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 SDF4Q9BRK5 362 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 CCDC91Q7Z6B0 441 aa8.86□□□□□ -0.99
SYNE2-205ENST00000394768 ENOX2Q16206 610 aaKnown RBP8.85□□□□□ -0.99
SYNE2-205ENST00000394768 SMC2O95347 1197 aa8.85□□□□□ -0.99
SYNE2-205ENST00000394768 PPM1EQ8WY54 764 aa8.85□□□□□ -0.99
SYNE2-205ENST00000394768 VPS37CA5D8V6 355 aaPredicted RBP8.85□□□□□ -0.99
SYNE2-205ENST00000394768 LEKR1Q6ZMV7 388 aa8.85□□□□□ -0.99
SYNE2-205ENST00000394768 MPHOSPH10O00566 681 aaKnown RBP8.85□□□□□ -0.99
SYNE2-205ENST00000394768 SAMD1Q6SPF0 538 aaPredicted RBP8.84□□□□□ -0.99
SYNE2-205ENST00000394768 RBM19Q9Y4C8 960 aaKnown RBP8.84□□□□□ -0.99
SYNE2-205ENST00000394768 RAB3GAP2Q9H2M9 1393 aa8.84□□□□□ -0.99
SYNE2-205ENST00000394768 UBTFL1P0CB47 393 aaPredicted RBP8.84□□□□□ -0.99
SYNE2-205ENST00000394768 CCDC39Q9UFE4 941 aa8.84□□□□□ -0.99
SYNE2-205ENST00000394768 MBD3O95983 291 aa8.84□□□□□ -0.99
SYNE2-205ENST00000394768 CCDC57Q2TAC2 916 aa8.84□□□□□ -0.99
SYNE2-205ENST00000394768 GAS2L2Q8NHY3 880 aa8.84□□□□□ -0.99
SYNE2-205ENST00000394768 CCDC158Q5M9N0 1113 aa8.83□□□□□ -1
SYNE2-205ENST00000394768 HMGB1P09429 215 aaKnown RBP8.83□□□□□ -1
SYNE2-205ENST00000394768 CLASRPQ8N2M8 674 aaKnown RBP8.83□□□□□ -1
SYNE2-205ENST00000394768 TMEM87AQ8NBN3 555 aa8.83□□□□□ -1
SYNE2-205ENST00000394768 KIAA0754O94854 1291 aa8.83□□□□□ -1
SYNE2-205ENST00000394768 GNAI3P08754 354 aa8.83□□□□□ -1
SYNE2-205ENST00000394768 NEUROD6Q96NK8 337 aa8.83□□□□□ -1
SYNE2-205ENST00000394768 JAKMIP3Q5VZ66 844 aa8.83□□□□□ -1
SYNE2-205ENST00000394768 DZIP1LQ8IYY4 767 aaKnown RBP8.83□□□□□ -1
SYNE2-205ENST00000394768 USP8P40818 1118 aa8.83□□□□□ -1
SYNE2-205ENST00000394768 TRAK1Q9UPV9 953 aa8.83□□□□□ -1
SYNE2-205ENST00000394768 EIF3JO75822 258 aaKnown RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms