RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CARD11Q9BXL7 1154 aa14.29□□□□□ -0.12
VPS53-202ENST00000389040 STRCP1A6NGW2 1772 aa14.29□□□□□ -0.12
VPS53-202ENST00000389040 PRAM1Q96QH2 718 aa14.29□□□□□ -0.12
VPS53-202ENST00000389040 ADGRL3Q9HAR2 1447 aa14.28□□□□□ -0.12
VPS53-202ENST00000389040 TRPM1Q7Z4N2 1603 aa14.28□□□□□ -0.12
VPS53-202ENST00000389040 KNDC1Q76NI1 1749 aa14.28□□□□□ -0.12
VPS53-202ENST00000389040 ATF3P18847 181 aa14.28□□□□□ -0.12
VPS53-202ENST00000389040 WAPLQ7Z5K2 1190 aa14.27□□□□□ -0.13
VPS53-202ENST00000389040 CENPJQ9HC77 1338 aaPredicted RBP14.25□□□□□ -0.13
VPS53-202ENST00000389040 SBNO2Q9Y2G9 1366 aa14.24□□□□□ -0.13
VPS53-202ENST00000389040 RBM33Q96EV2 1170 aaKnown RBP14.23□□□□□ -0.13
VPS53-202ENST00000389040 SLAIN2Q9P270 581 aa14.23□□□□□ -0.13
VPS53-202ENST00000389040 UBAP1LF5GYI3 381 aa14.23□□□□□ -0.13
VPS53-202ENST00000389040 FBXO41Q8TF61 875 aa14.23□□□□□ -0.13
VPS53-202ENST00000389040 PLEKHH1Q9ULM0 1364 aa14.22□□□□□ -0.13
VPS53-202ENST00000389040 YTHDC1Q96MU7 727 aaKnown RBP14.22□□□□□ -0.13
VPS53-202ENST00000389040 SCAF1Q9H7N4 1312 aaKnown RBP14.21□□□□□ -0.13
VPS53-202ENST00000389040 WASLO00401 505 aaPredicted RBP14.2□□□□□ -0.14
VPS53-202ENST00000389040 PUS7Q96PZ0 661 aaKnown RBP14.2□□□□□ -0.14
VPS53-202ENST00000389040 CDC42BPGQ6DT37 1551 aa14.2□□□□□ -0.14
VPS53-202ENST00000389040 SAFB2Q14151 953 aaKnown RBP eCLIP14.19□□□□□ -0.14
VPS53-202ENST00000389040 ADGRB2O60241 1585 aa14.18□□□□□ -0.14
VPS53-202ENST00000389040 USP47Q96K76 1375 aa14.18□□□□□ -0.14
VPS53-202ENST00000389040 EVC2Q86UK5 1308 aa14.18□□□□□ -0.14
VPS53-202ENST00000389040 EIF4G2P78344 907 aaKnown RBP eCLIP14.18□□□□□ -0.142e-8■■■■■ 33.8
VPS53-202ENST00000389040 XIRP1Q702N8 1843 aaKnown RBP14.18□□□□□ -0.14
VPS53-202ENST00000389040 ANKARQ7Z5J8 1434 aa14.18□□□□□ -0.14
VPS53-202ENST00000389040 ARHGEF28Q8N1W1 1705 aaKnown RBP14.17□□□□□ -0.14
VPS53-202ENST00000389040 MINK1Q8N4C8 1332 aaPredicted RBP14.17□□□□□ -0.14
VPS53-202ENST00000389040 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.17□□□□□ -0.14
VPS53-202ENST00000389040 ST20-MTHFSA0A0A6YYL1 179 aa14.17□□□□□ -0.14
VPS53-202ENST00000389040 HIRIP3Q9BW71 556 aaPredicted RBP14.17□□□□□ -0.14
VPS53-202ENST00000389040 MST1RQ04912 1400 aa14.16□□□□□ -0.14
VPS53-202ENST00000389040 CDCA8Q53HL2 280 aa14.15□□□□□ -0.14
VPS53-202ENST00000389040 CDK19Q9BWU1 502 aa14.15□□□□□ -0.14
VPS53-202ENST00000389040 C1orf167Q5SNV9 1468 aa14.15□□□□□ -0.14
VPS53-202ENST00000389040 NALCNQ8IZF0 1738 aa14.15□□□□□ -0.14
VPS53-202ENST00000389040 DDX10Q13206 875 aaKnown RBP14.15□□□□□ -0.14
VPS53-202ENST00000389040 TESK2Q96S53 571 aa14.15□□□□□ -0.14
VPS53-202ENST00000389040 CCDC61Q9Y6R9 512 aa14.14□□□□□ -0.15
VPS53-202ENST00000389040 TMF1P82094 1093 aa14.13□□□□□ -0.15
VPS53-202ENST00000389040 BRINP3Q76B58 766 aa14.13□□□□□ -0.15
VPS53-202ENST00000389040 PIP4K2BP78356 416 aa14.12□□□□□ -0.15
VPS53-202ENST00000389040 SRPK2P78362 688 aaKnown RBP14.12□□□□□ -0.15
VPS53-202ENST00000389040 TULP4Q9NRJ4 1543 aa14.12□□□□□ -0.15
VPS53-202ENST00000389040 NUDT16Q96DE0 195 aaKnown RBP14.11□□□□□ -0.15
VPS53-202ENST00000389040 ATAD2Q6PL18 1390 aa14.11□□□□□ -0.15
VPS53-202ENST00000389040 ESCO1Q5FWF5 840 aa14.11□□□□□ -0.15
VPS53-202ENST00000389040 NPHP3Q7Z494 1330 aa14.1□□□□□ -0.15
VPS53-202ENST00000389040 PLEKHG3A1L390 1219 aa14.09□□□□□ -0.15
VPS53-202ENST00000389040 PHF8Q9UPP1 1060 aa14.09□□□□□ -0.15
VPS53-202ENST00000389040 NINLQ9Y2I6 1382 aa14.09□□□□□ -0.15
VPS53-202ENST00000389040 HSPA5P11021 654 aaKnown RBP14.09□□□□□ -0.15
VPS53-202ENST00000389040 QRICH2Q9H0J4 1663 aa14.09□□□□□ -0.15
VPS53-202ENST00000389040 FMN2Q9NZ56 1722 aa14.08□□□□□ -0.15
VPS53-202ENST00000389040 ORAI2Q96SN7 254 aa14.08□□□□□ -0.16
VPS53-202ENST00000389040 PRR36Q9H6K5 1346 aa14.07□□□□□ -0.16
VPS53-202ENST00000389040 CABP2Q9NPB3 220 aa14.07□□□□□ -0.16
VPS53-202ENST00000389040 ATP7BP35670 1465 aa14.07□□□□□ -0.16
VPS53-202ENST00000389040 BRD4O60885 1362 aaPredicted RBP14.06□□□□□ -0.16
VPS53-202ENST00000389040 NUTM2FA1L443 756 aa14.06□□□□□ -0.16
VPS53-202ENST00000389040 PSME1Q06323 249 aa14.06□□□□□ -0.16
VPS53-202ENST00000389040 ZNF692Q9BU19 519 aaPredicted RBP14.06□□□□□ -0.16
VPS53-202ENST00000389040 GTF3C3Q9Y5Q9 886 aa14.06□□□□□ -0.16
VPS53-202ENST00000389040 SOS2Q07890 1332 aaPredicted RBP14.05□□□□□ -0.16
VPS53-202ENST00000389040 LRRC59Q96AG4 307 aaKnown RBP14.05□□□□□ -0.16
VPS53-202ENST00000389040 POLR3AO14802 1390 aaPredicted RBP14.05□□□□□ -0.16
VPS53-202ENST00000389040 FOXO3O43524 673 aa14.04□□□□□ -0.16
VPS53-202ENST00000389040 NGDNQ8NEJ9 315 aaKnown RBP14.04□□□□□ -0.16
VPS53-202ENST00000389040 ROBO1Q9Y6N7 1651 aa14.04□□□□□ -0.16
VPS53-202ENST00000389040 AHDC1Q5TGY3 1603 aaPredicted RBP14.04□□□□□ -0.16
VPS53-202ENST00000389040 CABP1Q9NZU7 370 aa14.03□□□□□ -0.16
VPS53-202ENST00000389040 KIF1AQ12756 1690 aa14.03□□□□□ -0.16
VPS53-202ENST00000389040 PPIP5K1Q6PFW1 1433 aa14.03□□□□□ -0.16
VPS53-202ENST00000389040 ANP32CO43423 234 aa14.02□□□□□ -0.16
VPS53-202ENST00000389040 HSPA1LP34931 641 aa14.02□□□□□ -0.16
VPS53-202ENST00000389040 TERF2IPQ9NYB0 399 aa14.02□□□□□ -0.16
VPS53-202ENST00000389040 WASHC2AQ641Q2 1341 aa14.02□□□□□ -0.16
VPS53-202ENST00000389040 SBNO1A3KN83 1393 aa14.02□□□□□ -0.17
VPS53-202ENST00000389040 KRT28Q7Z3Y7 464 aa14.02□□□□□ -0.17
VPS53-202ENST00000389040 ILDR1Q86SU0 546 aaPredicted RBP14.02□□□□□ -0.17
VPS53-202ENST00000389040 USP32Q8NFA0 1604 aa14.01□□□□□ -0.17
VPS53-202ENST00000389040 DISP3Q9P2K9 1392 aa14.01□□□□□ -0.17
VPS53-202ENST00000389040 ACEP12821 1306 aa14.01□□□□□ -0.17
VPS53-202ENST00000389040 PMFBP1Q8TBY8 1022 aa14.01□□□□□ -0.17
VPS53-202ENST00000389040 ITSN1Q15811 1721 aa14□□□□□ -0.17
VPS53-202ENST00000389040 CCER2I3L3R5 266 aa14□□□□□ -0.17
VPS53-202ENST00000389040 HDGFL2Q7Z4V5 671 aaPredicted RBP14□□□□□ -0.17
VPS53-202ENST00000389040 CPSF1Q10570 1443 aaKnown RBP13.99□□□□□ -0.17
VPS53-202ENST00000389040 JCADQ9P266 1359 aa13.98□□□□□ -0.17
VPS53-202ENST00000389040 TMC1Q8TDI8 760 aa13.98□□□□□ -0.17
VPS53-202ENST00000389040 PXDNQ92626 1479 aa13.98□□□□□ -0.17
VPS53-202ENST00000389040 NHSL1Q5SYE7 1610 aa13.98□□□□□ -0.17
VPS53-202ENST00000389040 SLC12A5Q9H2X9 1139 aa13.98□□□□□ -0.17
VPS53-202ENST00000389040 ARHGEF10O15013 1369 aa13.97□□□□□ -0.17
VPS53-202ENST00000389040 SPATA31A3Q5VYP0 1347 aa13.97□□□□□ -0.17
VPS53-202ENST00000389040 TOPAZ1Q8N9V7 1692 aa13.97□□□□□ -0.17
VPS53-202ENST00000389040 CCDC7Q96M83 1385 aa13.97□□□□□ -0.17
VPS53-202ENST00000389040 SPATA31A6Q5VVP1 1343 aa13.96□□□□□ -0.17
VPS53-202ENST00000389040 TTC21AQ8NDW8 1320 aa13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms